Clone BO15348 Report

Search the DGRC for BO15348

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG7484-RB
Protein status:BO15348.pep: validated full length
Sequenced Size:568

Clone Sequence Records

BO15348.3prime Sequence

566 bp (565 high quality bases) assembled on 2006-06-16

> BO15348.3prime
ATGGTCTAGAAAGCTTGCGATCCTGTTGGTTCGCAGGTAATCTTCATCGT
CATCTCCATCGGCATCCTCCACCACGCTGTACGAATTCTTGCCGGCACCA
TCCTTGGCCAGATGCGTTTCGAAGAACTCCTCGACAGTGTCTGTGTTCCA
CTTGGTTATGGACAACGTCTCCTGCACTTTGCCACTGGCATCTAGGAGCT
TAACCACGGGATCCAGTCCTCTTACGTATTTGATCTGCAGGTTGGGGAAC
TTGGCAGGTCGGCCGCTTTGAATAAAGGCCTGAATCTGCGGATAGGCCCG
GAATTTGCAGGTGCACACCTCCAGAATTGCCTTGGCATATGTCCGCTGTG
CCGCCGGCTGCTGATCCAAAGTGCAGCATTGCTTACACTGAGGCTTGATG
GTATCCAATCCGAAATCATCCAGTTTTTCGCAACTGGAACACATTAACTG
GGCCTTAATAAAACCCAACGCCCGGCAGTCGGCGGCCGTCAATTCGGCTT
GAATTTGCTGGCAACTTAAAGCCAGTAGAAGAAATATAGCACATTTATGC
ATGTCGACTGATAACT

BO15348.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-PB 537 CG7484-RB 1..534 552..19 2670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 657 CG7484-RB 72..605 552..19 2670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17655214..17655593 398..19 1885 99.7 Minus
3L 28110227 3L 17654782..17654901 513..394 600 100 Minus
3L 28110227 3L 17654688..17654726 552..514 195 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:07:36 has no hits.

BO15348.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:47 Download gff for BO15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 15..552 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:11 Download gff for BO15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 15..552 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:37 Download gff for BO15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..608 15..552 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:38:20 Download gff for BO15348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..608 15..552 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:38:20 Download gff for BO15348.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17654688..17654726 514..552 100 -> Minus
3L 17654782..17654900 395..513 100 -> Minus
3L 17655218..17655596 15..394 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:37 Download gff for BO15348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647788..17647826 514..552 100 -> Minus
arm_3L 17647882..17648000 395..513 100 -> Minus
arm_3L 17648318..17648696 15..394 99   Minus

BO15348.5prime Sequence

566 bp (565 high quality bases) assembled on 2006-06-16

> BO15348.5prime
GAAGTTATCAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
GCAAGCTTTCTAGACC

BO15348.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-PB 537 CG7484-RB 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 657 CG7484-RB 72..605 17..550 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17655214..17655593 171..550 1885 99.7 Plus
3L 28110227 3L 17654782..17654901 56..175 600 100 Plus
3L 28110227 3L 17654688..17654726 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:09:29 has no hits.

BO15348.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:48 Download gff for BO15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 17..554 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:13 Download gff for BO15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-PB 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:43 Download gff for BO15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..608 17..554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:34 Download gff for BO15348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..608 17..554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:34 Download gff for BO15348.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17654688..17654726 17..55 100 -> Plus
3L 17654782..17654900 56..174 100 -> Plus
3L 17655218..17655596 175..554 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:43 Download gff for BO15348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647788..17647826 17..55 100 -> Plus
arm_3L 17647882..17648000 56..174 100 -> Plus
arm_3L 17648318..17648696 175..554 99   Plus

BO15348.complete Sequence

568 bp assembled on 2007-10-17

GenBank Submission: FJ633421

> BO15348.complete
GAAGTTATCAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
GCAAGCTTTCTAGACCAT

BO15348.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 537 CG7484-PB 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-RB 657 CG7484-RB 72..605 17..550 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17655214..17655593 171..550 1885 99.7 Plus
3L 28110227 3L 17654782..17654901 56..175 600 100 Plus
3L 28110227 3L 17654688..17654726 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:33:10 has no hits.

BO15348.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:50 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 1..537 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:16 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 58..594 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:49 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..605 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:38 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 58..591 17..552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:38 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
CG7484-RB 72..605 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:38 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17654688..17654726 17..55 100 -> Plus
3L 17654782..17654900 56..174 100 -> Plus
3L 17655218..17655593 175..552 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:49 Download gff for BO15348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17647788..17647826 17..55 100 -> Plus
arm_3L 17647882..17648000 56..174 100 -> Plus
arm_3L 17648318..17648693 175..552 99   Plus

BO15348.pep Sequence

Translation from 16 to 568

> BO15348.pep
MHKCAIFLLLALSCQQIQAELTAADCRALGFIKAQLMCSSCEKLDDFGLD
TIKPQCKQCCTLDQQPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPA
KFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFETHLAK
DGAGKNSYSVVEDADGDDDEDYLRTNRIASFLDH

BO15348.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7484-PB 178 CG7484-PB 1..178 1..178 937 100 Plus