Clone Sequence Records
BO15348.3prime Sequence
566 bp (565 high quality bases) assembled on 2006-06-16
> BO15348.3prime
ATGGTCTAGAAAGCTTGCGATCCTGTTGGTTCGCAGGTAATCTTCATCGT
CATCTCCATCGGCATCCTCCACCACGCTGTACGAATTCTTGCCGGCACCA
TCCTTGGCCAGATGCGTTTCGAAGAACTCCTCGACAGTGTCTGTGTTCCA
CTTGGTTATGGACAACGTCTCCTGCACTTTGCCACTGGCATCTAGGAGCT
TAACCACGGGATCCAGTCCTCTTACGTATTTGATCTGCAGGTTGGGGAAC
TTGGCAGGTCGGCCGCTTTGAATAAAGGCCTGAATCTGCGGATAGGCCCG
GAATTTGCAGGTGCACACCTCCAGAATTGCCTTGGCATATGTCCGCTGTG
CCGCCGGCTGCTGATCCAAAGTGCAGCATTGCTTACACTGAGGCTTGATG
GTATCCAATCCGAAATCATCCAGTTTTTCGCAACTGGAACACATTAACTG
GGCCTTAATAAAACCCAACGCCCGGCAGTCGGCGGCCGTCAATTCGGCTT
GAATTTGCTGGCAACTTAAAGCCAGTAGAAGAAATATAGCACATTTATGC
ATGTCGACTGATAACT
BO15348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-PB | 537 | CG7484-RB | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 657 | CG7484-RB | 72..605 | 552..19 | 2670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17655214..17655593 | 398..19 | 1885 | 99.7 | Minus |
3L | 28110227 | 3L | 17654782..17654901 | 513..394 | 600 | 100 | Minus |
3L | 28110227 | 3L | 17654688..17654726 | 552..514 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:07:36 has no hits.
BO15348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:47 Download gff for
BO15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:11 Download gff for
BO15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:37 Download gff for
BO15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..608 | 15..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:38:20 Download gff for
BO15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..608 | 15..552 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:38:20 Download gff for
BO15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17654688..17654726 | 514..552 | 100 | -> | Minus |
3L | 17654782..17654900 | 395..513 | 100 | -> | Minus |
3L | 17655218..17655596 | 15..394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:37 Download gff for
BO15348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17647788..17647826 | 514..552 | 100 | -> | Minus |
arm_3L | 17647882..17648000 | 395..513 | 100 | -> | Minus |
arm_3L | 17648318..17648696 | 15..394 | 99 | | Minus |
BO15348.5prime Sequence
566 bp (565 high quality bases) assembled on 2006-06-16
> BO15348.5prime
GAAGTTATCAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
GCAAGCTTTCTAGACC
BO15348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-PB | 537 | CG7484-RB | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 657 | CG7484-RB | 72..605 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17655214..17655593 | 171..550 | 1885 | 99.7 | Plus |
3L | 28110227 | 3L | 17654782..17654901 | 56..175 | 600 | 100 | Plus |
3L | 28110227 | 3L | 17654688..17654726 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:09:29 has no hits.
BO15348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:48 Download gff for
BO15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:13 Download gff for
BO15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-PB | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:43 Download gff for
BO15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..608 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:34 Download gff for
BO15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..608 | 17..554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:34 Download gff for
BO15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17654688..17654726 | 17..55 | 100 | -> | Plus |
3L | 17654782..17654900 | 56..174 | 100 | -> | Plus |
3L | 17655218..17655596 | 175..554 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:43 Download gff for
BO15348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17647788..17647826 | 17..55 | 100 | -> | Plus |
arm_3L | 17647882..17648000 | 56..174 | 100 | -> | Plus |
arm_3L | 17648318..17648696 | 175..554 | 99 | | Plus |
BO15348.complete Sequence
568 bp assembled on 2007-10-17
GenBank Submission: FJ633421
> BO15348.complete
GAAGTTATCAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTT
TAAGTTGCCAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCG
TTGGGTTTTATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGA
TGATTTCGGATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTT
TGGATCAGCAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAG
GTGTGCACCTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCA
AAGCGGCCGACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAG
GACTGGATCCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAG
ACGTTGTCCATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGA
AACGCATCTGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGG
AGGATGCCGATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATC
GCAAGCTTTCTAGACCAT
BO15348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 537 | CG7484-PB | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-RB | 657 | CG7484-RB | 72..605 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17655214..17655593 | 171..550 | 1885 | 99.7 | Plus |
3L | 28110227 | 3L | 17654782..17654901 | 56..175 | 600 | 100 | Plus |
3L | 28110227 | 3L | 17654688..17654726 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:33:10 has no hits.
BO15348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:50 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 1..537 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:16 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 58..594 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:49 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..605 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:38 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 58..591 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:38 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7484-RB | 72..605 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:38 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17654688..17654726 | 17..55 | 100 | -> | Plus |
3L | 17654782..17654900 | 56..174 | 100 | -> | Plus |
3L | 17655218..17655593 | 175..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:49 Download gff for
BO15348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17647788..17647826 | 17..55 | 100 | -> | Plus |
arm_3L | 17647882..17648000 | 56..174 | 100 | -> | Plus |
arm_3L | 17648318..17648693 | 175..552 | 99 | | Plus |
BO15348.pep Sequence
Translation from 16 to 568
> BO15348.pep
MHKCAIFLLLALSCQQIQAELTAADCRALGFIKAQLMCSSCEKLDDFGLD
TIKPQCKQCCTLDQQPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPA
KFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFETHLAK
DGAGKNSYSVVEDADGDDDEDYLRTNRIASFLDH
BO15348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7484-PB | 178 | CG7484-PB | 1..178 | 1..178 | 937 | 100 | Plus |