Clone Sequence Records
BO15349.3prime Sequence
953 bp (751 high quality bases) assembled on 2006-06-16
> BO15349.3prime
ATGGTCTAGAAAGCTTGCTAAAGGCCGGTACCTATTGATGAAGGAGTTGA
TGATAGGCGCCACCTTCTCTGGCTCGTTAAGGTGGACATGGTGAGTTCCT
TCAACCTCGTGGTATTCGAACAGAGGATTCTTCTGCAGCTCCGCTAACAC
TTCATCGAAGTACTCCTTGCGTTCGTAGTAGGGAGCCTGCAGGGCCTTGA
TAAAGAGATGCGGGCACTTAATTCTGCGCGCCATCTCCATTGGCACCTCC
TGGTGCAACGTGTAAAATAGTGATGACTTCAGTCGGTTGTCGCGGGAGAA
GTAATACTTGTGAGGCTCGTGCGTCGATGGTTTGCAGTTCCGCTGCAGCA
GATACTTGCAGGCATCAATTGAGACGGACTTATTTGAGCCCTCGTGCAGC
CGGGTTACCAACTGATCCCAGTCATAGGCAGGCGGCTCAGACCCACTCTT
CAGACGTCGTTCCAGCTTCAGTGCGGACTCAATTCGCTCGGTAAGCGAAT
CCACAATGCCGCGAGCACTTCGAACTGGCGGCTTCAGCACATCCAGACCC
ACGAACAGATCAACTTTGTCAGGAAACAGAGCACTGAACACAAAGCCATT
GATGGAGCTCATCGAGTGGGCCAATATAGAGATCTTGTCCCAGTTGTACT
CCTCCATTAGTCGGCGAGTGATCAGCACGAGGTCAATGGAGTGGTAGGAA
GTGCCAGGTGGCAGCCAGGAGGACAACCCATGTCCTGGTGCATCGATGCT
TAGGAAAGAGAGGTGGGACGGCAGGAGAGGAGCCAAAGTATCGAAGGTAC
CGGCATTATCCTGCCAGCCATGCATGCCAACAATGGGTCGTACGTGCTTC
GGTCCATACCATTTGCCCGAGATGTGACCCCATGGAACTGGTATGCTGAT
TTCATCGAAATGTTTGTTGAGGATTTTGAAAGGCTTTTGTGGGGCCACTG
CTG
BO15349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-PA | 993 | CG7632-RA | 72..990 | 937..19 | 4570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-RA | 1442 | CG7632-RA | 281..1214 | 953..19 | 4620 | 99.7 | Minus |
CG7632-RB | 1388 | CG7632-RB | 268..1160 | 911..19 | 4465 | 100 | Minus |
CG11309-RF | 2125 | CG11309-RF | 370..480 | 900..790 | 210 | 79.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21305079..21305969 | 909..19 | 4455 | 100 | Minus |
3L | 28110227 | 3L | 21303430..21303540 | 790..900 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:13:19 has no hits.
BO15349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:50 Download gff for
BO15349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-PA | 57..993 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:14 Download gff for
BO15349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-PA | 57..993 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:49:45 Download gff for
BO15349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 281..1214 | 19..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:32:20 Download gff for
BO15349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 281..1214 | 19..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:32:20 Download gff for
BO15349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21304977..21305019 | 910..953 | 93 | -> | Minus |
3L | 21305079..21305969 | 19..909 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:49:45 Download gff for
BO15349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21298077..21298119 | 910..953 | 93 | -> | Minus |
arm_3L | 21298179..21299069 | 19..909 | 100 | | Minus |
BO15349.5prime Sequence
869 bp (768 high quality bases) assembled on 2006-06-16
> BO15349.5prime
GAAGTTATCAGTCGACATGAAGGTGTCCAGAGGTCTGTTCCTGCTAAAAC
AGTTGCCAAATGTAAGAAACTCCAGCAGTGGGCCCACAAAGCCTTTCAAA
ATCCTCAACAAACATTTCGATGAAATCAGCATACCAGTTCCATGGGGTCA
CATCTCGGGCAAATGGTATGGACCGAAGCACGTACGACCCATTGTTGGCA
TGCATGGCTGGCAGGATAATGCCGGTACCTTCGATACTTTGGCTCCTCTC
CTGCCGTCCCACCTCTCTTTCCTAAGCATCGATGCACCAGGACATGGGTT
GTCCTCCTGGCTGCCACCTGGCACTTCCTACCACTCCATTGACCTCGTGC
TGATCACTCGCCGACTAATGGAGGAGTACAACTGGGACAAGATCTCTATA
TTGGCCCACTCGATGAGCTCCATCAATGGCTTTGTGTTCAGTGCTCTGTT
TCCTGACAAAGTTGATCTGTTCGTGGGTCTGGATGTGCTGAAGCCGCCAG
TTCGAAGTGCTCGCGGCATTGTGGATTCGCTTACCGAGCGAATTGAGTCC
GCACTGAAGCTGGAACGACGTCTGAAGAGTGGGTCTGAGCCGCCTGCCTA
TGACTGGGATCAGTTGGTAACCCGGCTGCACGAGGGCTCAAATAAGTCCG
TCTCAATTGATGCCTGCAAGTATCTGCTGCAGCGGAACTGCAAACCATCG
ACGCACGAGCCTCACAAGTATTACTTCTCCCGCGACAACCGACTGAAGTC
ATCACTATTTTACACGTTGCACCAGGAGGTGCCAATGGAGATGGCGCGCA
GAATTAAGTGCCCGCATCTCTTTATCAAGGCCCTGCAAGCTCCCTACTAC
GAACGCAAGGAGTACTTCG
BO15349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-PA | 993 | CG7632-RA | 1..853 | 17..869 | 4215 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-RA | 1442 | CG7632-RA | 225..1077 | 17..869 | 4235 | 99.8 | Plus |
CG7632-RB | 1388 | CG7632-RB | 268..1023 | 114..869 | 3765 | 99.9 | Plus |
CG7632-RB | 1388 | CG7632-RB | 225..269 | 17..61 | 225 | 100 | Plus |
CG11309-RF | 2125 | CG11309-RF | 370..480 | 125..235 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21305079..21305832 | 116..869 | 3755 | 99.9 | Plus |
3L | 28110227 | 3L | 21304921..21305019 | 17..115 | 480 | 99 | Plus |
3L | 28110227 | 3L | 21303430..21303540 | 235..125 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:43:04 has no hits.
BO15349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:51 Download gff for
BO15349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:15 Download gff for
BO15349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:55 Download gff for
BO15349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 222..1077 | 14..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:19 Download gff for
BO15349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 222..1077 | 14..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:19 Download gff for
BO15349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21304918..21305019 | 14..115 | 98 | -> | Plus |
3L | 21305079..21305832 | 116..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:55 Download gff for
BO15349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21298018..21298119 | 14..115 | 98 | -> | Plus |
arm_3L | 21298179..21298932 | 116..869 | 99 | | Plus |
BO15349.complete Sequence
1024 bp (1024 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633422
> BO15349.complete
GAAGTTATCAGTCGACATGAAGGTGTCCAGAGGTCTGTTCCTGCTAAAAC
AGTTGCCAAATGTAAGAAACTCCAGCAGTGGGCCCACAAAGCCTTTCAAA
ATCCTCAACAAACATTTCGATGAAATCAGCATACCAGTTCCATGGGGTCA
CATCTCGGGCAAATGGTATGGACCGAAGCACGTACGACCCATTGTTGGCA
TGCATGGCTGGCAGGATAATGCCGGTACCTTCGATACTTTGGCTCCTCTC
CTGCCGTCCCACCTCTCTTTCCTAAGCATCGATGCACCAGGACATGGGTT
GTCCTCCTGGCTGCCACCTGGCACTTCCTACCACTCCATTGACCTCGTGC
TGATCACTCGCCGACTAATGGAGGAGTACAACTGGGACAAGATCTCTATA
TTGGCCCACTCGATGAGCTCCATCAATGGCTTTGTGTTCAGTGCTCTGTT
TCCTGACAAAGTTGATCTGTTCGTGGGTCTGGATGTGCTGAAGCCGCCAG
TTCGAAGTGCTCGCGGCATTGTGGATTCGCTTACCGAGCGAATTGAGTCC
GCACTGAAGCTGGAACGACGTCTGAAGAGTGGGTCTGAGCCGCCTGCCTA
TGACTGGGATCAGTTGGTAACCCGGCTGCACGAGGGCTCAAATAAGTCCG
TCTCAATTGATGCCTGCAAGTATCTGCTGCAGCGGAACTGCAAACCATCG
ACGCACGAGCCTCACAAGTATTACTTCTCCCGCGACAACCGACTGAAGTC
ATCACTATTTTACACGTTGCACCAGGAGGTGCCAATGGAGATGGCGCGCA
GAATTAAGTGCCCGCATCTCTTTATCAAGGCCCTGCAGGCTCCCTACTAC
GAACGCAAGGAGTACTTCGATGAAGTGTTAGCGGAGCTGCAGAAGAATCC
TCTGTTCGAATACCACGAGGTTGAAGGAACTCACCATGTCCACCTTAACG
AGCCAGAGAAGGTGGCGCCTATCATCAACTCCTTCATCAATAGGTACCGG
CCTTTAGCAAGCTTTCTAGACCAT
BO15349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-RA | 993 | CG7632-PA | 1..990 | 17..1006 | 4935 | 99.9 | Plus |
CG7632-RB | 939 | CG7632-PB | 44..936 | 114..1006 | 4465 | 100 | Plus |
CG7632-RB | 939 | CG7632-PB | 1..45 | 17..61 | 225 | 100 | Plus |
CG11309-RF | 1047 | CG11309-PF | 112..222 | 125..235 | 210 | 79.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-RA | 1442 | CG7632-RA | 225..1214 | 17..1006 | 4935 | 99.9 | Plus |
CG7632-RB | 1388 | CG7632-RB | 268..1160 | 114..1006 | 4465 | 100 | Plus |
CG7632-RB | 1388 | CG7632-RB | 225..269 | 17..61 | 225 | 100 | Plus |
CG11309-RF | 2125 | CG11309-RF | 370..480 | 125..235 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21305079..21305969 | 116..1006 | 4455 | 100 | Plus |
3L | 28110227 | 3L | 21304921..21305019 | 17..115 | 480 | 99 | Plus |
3L | 28110227 | 3L | 21303430..21303540 | 235..125 | 210 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:23:39 has no hits.
BO15349.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:16 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 1..993 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:13 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 202..1194 | 14..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:13 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 225..1214 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:16 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 202..1194 | 14..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:33 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7632-RA | 225..1214 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:33 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21305079..21305969 | 116..1008 | 99 | | Plus |
3L | 21304921..21305019 | 17..115 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:13 Download gff for
BO15349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21298021..21298119 | 17..115 | 98 | -> | Plus |
arm_3L | 21298179..21299069 | 116..1008 | 99 | | Plus |
BO15349.pep Sequence
Translation from 16 to 1024
> BO15349.pep
MKVSRGLFLLKQLPNVRNSSSGPTKPFKILNKHFDEISIPVPWGHISGKW
YGPKHVRPIVGMHGWQDNAGTFDTLAPLLPSHLSFLSIDAPGHGLSSWLP
PGTSYHSIDLVLITRRLMEEYNWDKISILAHSMSSINGFVFSALFPDKVD
LFVGLDVLKPPVRSARGIVDSLTERIESALKLERRLKSGSEPPAYDWDQL
VTRLHEGSNKSVSIDACKYLLQRNCKPSTHEPHKYYFSRDNRLKSSLFYT
LHQEVPMEMARRIKCPHLFIKALQAPYYERKEYFDEVLAELQKNPLFEYH
EVEGTHHVHLNEPEKVAPIINSFINRYRPLASFLDH
BO15349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7632-PA | 330 | CG7632-PA | 1..330 | 1..330 | 1766 | 100 | Plus |
CG7632-PB | 312 | CG7632-PB | 1..312 | 1..330 | 1642 | 94.5 | Plus |
CG11309-PA | 358 | CG11309-PA | 27..343 | 19..332 | 868 | 50.5 | Plus |
CG11309-PF | 348 | CG11309-PF | 27..333 | 19..332 | 863 | 50.6 | Plus |
CG11309-PE | 348 | CG11309-PE | 27..333 | 19..332 | 863 | 50.6 | Plus |