Clone BO15350 Report

Search the DGRC for BO15350

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG12341-RA
Protein status:BO15350.pep: validated full length
Sequenced Size:418

Clone Sequence Records

BO15350.5prime Sequence

416 bp (415 high quality bases) assembled on 2006-06-16

> BO15350.5prime
GAAGTTATCAGTCGACATGTTCTCGGACGACACCGATGAGTTGGACACCA
TCGCCGATGTGATGGGACTCCGGTCACAGGCGCGTCTCAATACGTTTCGC
GAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCATATTCAT
TCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAGCACAAGT
TCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCTTTCCCCG
GCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGCATCGTGC
CTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGCCTCGGCC
AGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGCCACGCTA
GCAAGCTTTCTAGACC

BO15350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-PA 387 CG12341-RA 1..384 17..400 1845 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..891 16..400 1880 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812366..10812750 400..16 1880 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 00:42:25 has no hits.

BO15350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:52 Download gff for BO15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 17..401 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:18 Download gff for BO15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 17..401 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:54 Download gff for BO15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 16..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:17 Download gff for BO15350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 16..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:17 Download gff for BO15350.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10812360..10812750 16..406 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:54 Download gff for BO15350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699865..6700255 16..406 98   Minus

BO15350.3prime Sequence

416 bp (415 high quality bases) assembled on 2006-06-16

> BO15350.3prime
ATGGTCTAGAAAGCTTGCTAGCGTGGCCAGAATCCGGGTGAATCCCAGGC
AGGCGGAGACGATGGTCTGGCCGAGGCCCCAGATCATGGCGTATATGGGC
GACATGGGCAGACTGGAGGCACGATGCACAAAGGCGATGACTGCACTGCT
GATGATGCCACTGGAGGCCGGGGAAAGGAATCCCATGACAAGGATGAGGA
TCGAGAAGAATCGTCCGAACTTGTGCTTCCGGAGCGTGAAGAAGGCCACC
ACGGCGGCGCAGGTGTGAATGAATATGGAGGAGAACAGGGCCCACAGAAA
GACGTGGTACCACATTTCGCGAAACGTATTGAGACGCGCCTGTGACCGGA
GTCCCATCACATCGGCGATGGTGTCCAACTCATCGGTGTCGTCCGAGAAC
ATGTCGACTGATAACT

BO15350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-PA 387 CG12341-RA 1..384 402..19 1845 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..891 403..19 1880 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812366..10812750 19..403 1880 99.2 Plus
Blast to na_te.dros performed on 2015-01-31 10:45:16 has no hits.

BO15350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:52 Download gff for BO15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 18..402 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:16 Download gff for BO15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-PA 1..387 18..402 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:42:58 Download gff for BO15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 13..403 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:50:41 Download gff for BO15350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 507..897 13..403 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:50:41 Download gff for BO15350.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10812360..10812750 13..403 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:42:58 Download gff for BO15350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699865..6700255 13..403 98   Plus

BO15350.complete Sequence

418 bp (418 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633423

> BO15350.complete
GAAGTTATCAGTCGACATGTTCTCGGACGACACCGATGAGTTGGACACCA
TCGCCGATGTGATGGGACTCCGGTCACAGGCGCGTCTCAATACGTTTCGC
GAAATGTGGTACCACGTCTTTCTGTGGGCCCTGTTCTCCTCCATATTCAT
TCACACCTGCGCCGCCGTGGTGGCCTTCTTCACGCTCCGGAAGCACAAGT
TCGGACGATTCTTCTCGATCCTCATCCTTGTCATGGGATTCCTTTCCCCG
GCCTCCAGTGGCATCATCAGCAGTGCAGTCATCGCCTTTGTGCATCGTGC
CTCCAGTCTGCCCATGTCGCCCATATACGCCATGATCTGGGGCCTCGGCC
AGACCATCGTCTCCGCCTGCCTGGGATTCACCCGGATTCTGGCCACGCTA
GCAAGCTTTCTAGACCAT

BO15350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 387 CG12341-PA 1..384 17..400 1875 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-RA 1100 CG12341-RA 507..891 16..400 1880 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10812366..10812750 400..16 1880 99.2 Minus
Blast to na_te.dros performed on 2014-11-26 16:42:03 has no hits.

BO15350.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:17 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 1..387 17..401 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:15 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 527..917 16..406 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:29 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 513..891 22..402 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:17 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 527..917 16..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:27 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
CG12341-RA 513..891 22..402 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:27 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10812364..10812744 22..402 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:29 Download gff for BO15350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6699869..6700249 22..402 98   Minus

BO15350.pep Sequence

Translation from 16 to 418

> BO15350.pep
MFSDDTDELDTIADVMGLRSQARLNTFREMWYHVFLWALFSSIFIHTCAA
VVAFFTLRKHKFGRFFSILILVMGFLSPASSGIISSAVIAFVHRASSLPM
SPIYAMIWGLGQTIVSACLGFTRILATLASFLDH

BO15350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12341-PA 128 CG12341-PA 1..128 1..128 653 100 Plus