Clone BO15351 Report

Search the DGRC for BO15351

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptRpS8-RC
Protein status:BO15351.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO15351.3prime Sequence

656 bp (655 high quality bases) assembled on 2006-06-16

> BO15351.3prime
ATGGTCTAGAAAGCTTGCTTTCTTAGACTTGATCTTCTTAAGGTAGAATT
CCAACTCCTTGCCTTCCAAAATGTAGCCGTCGGAGCGACCGCACTGTCCG
GGGCGGGAAGAAATGCAAGCCAAGATGCGGCCGGAGGTGAACTGATCCTC
GAGGGCCTGCTCGACCTTGCCGTACTTCTGGCGCTCCAGGTACTTCTTCA
TAACCTTTTCGCTGCGCTTCTTGGTCAGCACGTCGTTCTCGTCCTCCTTC
TGGGCGTGCTTGGGGTTACGCTTGCGTCCCAGGGGCAGCACGTAGTGAGC
CTCGTACCACTGGCGGAAGGGCGTGGCATCGATGACCACGATGCTGTTCT
TCACCAAGGTCTTGGTTCGCACCAGCTCGTTGTTGGAGGCGTTGTACACA
ACATCGGCGATACGGGTCTTGCGCGCCACTCCCTCGGAGGCCCAGGCGAA
GTTTCCGGTTTCCAGGCGCAGAGCACGGAGCTTGGTGTTTCCACCACGGG
TGCGCACCTTGTGCACGCGGCCGGAGCCAAGCTTGGTGTTGGCGGCGGGG
CGTCCCAACTCGAACTTGCGCTTCTTGCGGAGCGACTTGCGCTTGCCTCC
GGTGGCCCGGCGTTTGTGTGCACTATCGCGGCTAATACCCATGTCGACTG
ATAACT

BO15351.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7808-PC 627 RpS8-RC 1..624 642..19 3095 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 931 CG7808-RG 238..863 644..19 3115 99.8 Minus
RpS8-RF 726 CG7808-RF 33..658 644..19 3115 99.8 Minus
RpS8-RE 756 CG7808-RE 63..688 644..19 3115 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29862783..29863196 533..120 2055 99.8 Minus
3R 32079331 3R 29862198..29862305 639..532 540 100 Minus
3R 32079331 3R 29863414..29863515 120..19 510 100 Minus
Blast to na_te.dros performed on 2015-02-03 05:53:53 has no hits.

BO15351.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:54 Download gff for BO15351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:19 Download gff for BO15351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:19:15 Download gff for BO15351.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 22..663 14..654 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:53 Download gff for BO15351.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 52..693 14..654 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:53 Download gff for BO15351.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29862192..29862305 532..647 96 -> Minus
3R 29862785..29863196 120..531 99 -> Minus
3R 29863415..29863520 14..119 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:19:15 Download gff for BO15351.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25687914..25688027 532..647 96 -> Minus
arm_3R 25688507..25688918 120..531 99 -> Minus
arm_3R 25689137..25689242 14..119 98   Minus

BO15351.5prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-29

> BO15351.5prime
GAAGTTATCAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAAGCAAGCTTTC
TAGACC

BO15351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7808-PC 627 RpS8-RC 1..624 17..640 3095 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 931 CG7808-RG 238..863 15..640 3115 99.8 Plus
RpS8-RF 726 CG7808-RF 33..658 15..640 3115 99.8 Plus
RpS8-RE 756 CG7808-RE 63..688 15..640 3115 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29862783..29863196 126..539 2055 99.8 Plus
3R 32079331 3R 29862198..29862305 20..127 540 100 Plus
3R 32079331 3R 29863414..29863515 539..640 510 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:06:01 has no hits.

BO15351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:55 Download gff for BO15351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:20 Download gff for BO15351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7808-PC 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:48 Download gff for BO15351.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 22..663 5..645 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:13 Download gff for BO15351.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 52..693 5..645 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:13 Download gff for BO15351.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29862192..29862305 12..127 96 -> Plus
3R 29862785..29863196 128..539 99 -> Plus
3R 29863415..29863520 540..645 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:48 Download gff for BO15351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25687914..25688027 12..127 96 -> Plus
arm_3R 25688507..25688918 128..539 99 -> Plus
arm_3R 25689137..25689242 540..645 98   Plus

BO15351.complete Sequence

658 bp (658 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633424

> BO15351.complete
GAAGTTATCAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAAGCAAGCTTTC
TAGACCAT

BO15351.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 627 CG7808-PG 1..624 17..640 3105 99.8 Plus
RpS8-RF 627 CG7808-PF 1..624 17..640 3105 99.8 Plus
RpS8-RE 627 CG7808-PE 1..624 17..640 3105 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-RG 931 CG7808-RG 238..863 15..640 3115 99.8 Plus
RpS8-RF 726 CG7808-RF 33..658 15..640 3115 99.8 Plus
RpS8-RE 756 CG7808-RE 63..688 15..640 3115 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29862783..29863196 126..539 2055 99.8 Plus
3R 32079331 3R 29862198..29862305 20..127 540 100 Plus
3R 32079331 3R 29863414..29863515 539..640 510 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:04 has no hits.

BO15351.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:20 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:16 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 52..693 5..645 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:46 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 35..658 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:20 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 52..693 5..645 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:22 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 65..688 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:22 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29862785..29863196 128..539 99 -> Plus
3R 29863415..29863515 540..642 98   Plus
3R 29862197..29862305 17..127 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:46 Download gff for BO15351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25688507..25688918 128..539 99 -> Plus
arm_3R 25689137..25689237 540..642 98   Plus
arm_3R 25687919..25688027 17..127 98 -> Plus

BO15351.pep Sequence

Translation from 16 to 658

> BO15351.pep
MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRG
GNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNS
IVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKK
YLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY
LKKIKSKKASFLDH

BO15351.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-PG 208 CG7808-PG 1..208 1..208 1068 100 Plus
RpS8-PF 208 CG7808-PF 1..208 1..208 1068 100 Plus
RpS8-PE 208 CG7808-PE 1..208 1..208 1068 100 Plus
RpS8-PC 208 CG7808-PC 1..208 1..208 1068 100 Plus