Clone Sequence Records
BO15351.3prime Sequence
656 bp (655 high quality bases) assembled on 2006-06-16
> BO15351.3prime
ATGGTCTAGAAAGCTTGCTTTCTTAGACTTGATCTTCTTAAGGTAGAATT
CCAACTCCTTGCCTTCCAAAATGTAGCCGTCGGAGCGACCGCACTGTCCG
GGGCGGGAAGAAATGCAAGCCAAGATGCGGCCGGAGGTGAACTGATCCTC
GAGGGCCTGCTCGACCTTGCCGTACTTCTGGCGCTCCAGGTACTTCTTCA
TAACCTTTTCGCTGCGCTTCTTGGTCAGCACGTCGTTCTCGTCCTCCTTC
TGGGCGTGCTTGGGGTTACGCTTGCGTCCCAGGGGCAGCACGTAGTGAGC
CTCGTACCACTGGCGGAAGGGCGTGGCATCGATGACCACGATGCTGTTCT
TCACCAAGGTCTTGGTTCGCACCAGCTCGTTGTTGGAGGCGTTGTACACA
ACATCGGCGATACGGGTCTTGCGCGCCACTCCCTCGGAGGCCCAGGCGAA
GTTTCCGGTTTCCAGGCGCAGAGCACGGAGCTTGGTGTTTCCACCACGGG
TGCGCACCTTGTGCACGCGGCCGGAGCCAAGCTTGGTGTTGGCGGCGGGG
CGTCCCAACTCGAACTTGCGCTTCTTGCGGAGCGACTTGCGCTTGCCTCC
GGTGGCCCGGCGTTTGTGTGCACTATCGCGGCTAATACCCATGTCGACTG
ATAACT
BO15351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7808-PC | 627 | RpS8-RC | 1..624 | 642..19 | 3095 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 931 | CG7808-RG | 238..863 | 644..19 | 3115 | 99.8 | Minus |
RpS8-RF | 726 | CG7808-RF | 33..658 | 644..19 | 3115 | 99.8 | Minus |
RpS8-RE | 756 | CG7808-RE | 63..688 | 644..19 | 3115 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29862783..29863196 | 533..120 | 2055 | 99.8 | Minus |
3R | 32079331 | 3R | 29862198..29862305 | 639..532 | 540 | 100 | Minus |
3R | 32079331 | 3R | 29863414..29863515 | 120..19 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 05:53:53 has no hits.
BO15351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:54 Download gff for
BO15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:19 Download gff for
BO15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:19:15 Download gff for
BO15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 22..663 | 14..654 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:53 Download gff for
BO15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RE | 52..693 | 14..654 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:53 Download gff for
BO15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29862192..29862305 | 532..647 | 96 | -> | Minus |
3R | 29862785..29863196 | 120..531 | 99 | -> | Minus |
3R | 29863415..29863520 | 14..119 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:19:15 Download gff for
BO15351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25687914..25688027 | 532..647 | 96 | -> | Minus |
arm_3R | 25688507..25688918 | 120..531 | 99 | -> | Minus |
arm_3R | 25689137..25689242 | 14..119 | 98 | | Minus |
BO15351.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-29
> BO15351.5prime
GAAGTTATCAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAAGCAAGCTTTC
TAGACC
BO15351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7808-PC | 627 | RpS8-RC | 1..624 | 17..640 | 3095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 931 | CG7808-RG | 238..863 | 15..640 | 3115 | 99.8 | Plus |
RpS8-RF | 726 | CG7808-RF | 33..658 | 15..640 | 3115 | 99.8 | Plus |
RpS8-RE | 756 | CG7808-RE | 63..688 | 15..640 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29862783..29863196 | 126..539 | 2055 | 99.8 | Plus |
3R | 32079331 | 3R | 29862198..29862305 | 20..127 | 540 | 100 | Plus |
3R | 32079331 | 3R | 29863414..29863515 | 539..640 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:06:01 has no hits.
BO15351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:55 Download gff for
BO15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:20 Download gff for
BO15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7808-PC | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:48 Download gff for
BO15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 22..663 | 5..645 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:13 Download gff for
BO15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RE | 52..693 | 5..645 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:13 Download gff for
BO15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29862192..29862305 | 12..127 | 96 | -> | Plus |
3R | 29862785..29863196 | 128..539 | 99 | -> | Plus |
3R | 29863415..29863520 | 540..645 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:48 Download gff for
BO15351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25687914..25688027 | 12..127 | 96 | -> | Plus |
arm_3R | 25688507..25688918 | 128..539 | 99 | -> | Plus |
arm_3R | 25689137..25689242 | 540..645 | 98 | | Plus |
BO15351.complete Sequence
658 bp (658 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633424
> BO15351.complete
GAAGTTATCAGTCGACATGGGTATTAGCCGCGATAGTGCACACAAACGCC
GGGCCACCGGAGGCAAGCGCAAGTCGCTCCGCAAGAAGCGCAAGTTCGAG
TTGGGACGCCCCGCCGCCAACACCAAGCTTGGCTCCGGCCGCGTGCACAA
GGTGCGCACCCGTGGTGGAAACACCAAGCTCCGTGCTCTGCGCCTGGAAA
CCGGAAACTTCGCCTGGGCCTCCGAGGGAGTGGCGCGCAAGACCCGTATC
GCCGATGTTGTGTACAACGCCTCCAACAACGAGCTGGTGCGAACCAAGAC
CTTGGTGAAGAACAGCATCGTGGTCATCGATGCCACGCCCTTCCGCCAGT
GGTACGAGGCTCACTACGTGCTGCCCCTGGGACGCAAGCGTAACCCCAAG
CACGCCCAGAAGGAGGACGAGAACGACGTGCTGACCAAGAAGCGCAGCGA
AAAGGTTATGAAGAAGTACCTGGAGCGCCAGAAGTACGGCAAGGTCGAGC
AGGCCCTCGAGGATCAGTTCACCTCCGGCCGCATCTTGGCTTGCATTTCT
TCCCGCCCCGGACAGTGCGGTCGCTCCGACGGCTACATTTTGGAAGGCAA
GGAGTTGGAATTCTACCTTAAGAAGATCAAGTCTAAGAAAGCAAGCTTTC
TAGACCAT
BO15351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 627 | CG7808-PG | 1..624 | 17..640 | 3105 | 99.8 | Plus |
RpS8-RF | 627 | CG7808-PF | 1..624 | 17..640 | 3105 | 99.8 | Plus |
RpS8-RE | 627 | CG7808-PE | 1..624 | 17..640 | 3105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-RG | 931 | CG7808-RG | 238..863 | 15..640 | 3115 | 99.8 | Plus |
RpS8-RF | 726 | CG7808-RF | 33..658 | 15..640 | 3115 | 99.8 | Plus |
RpS8-RE | 756 | CG7808-RE | 63..688 | 15..640 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29862783..29863196 | 126..539 | 2055 | 99.8 | Plus |
3R | 32079331 | 3R | 29862198..29862305 | 20..127 | 540 | 100 | Plus |
3R | 32079331 | 3R | 29863414..29863515 | 539..640 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:04 has no hits.
BO15351.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:20 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:16 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 52..693 | 5..645 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:46 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 35..658 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:20 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RC | 52..693 | 5..645 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:22 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS8-RE | 65..688 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:22 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29862785..29863196 | 128..539 | 99 | -> | Plus |
3R | 29863415..29863515 | 540..642 | 98 | | Plus |
3R | 29862197..29862305 | 17..127 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:46 Download gff for
BO15351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25688507..25688918 | 128..539 | 99 | -> | Plus |
arm_3R | 25689137..25689237 | 540..642 | 98 | | Plus |
arm_3R | 25687919..25688027 | 17..127 | 98 | -> | Plus |
BO15351.pep Sequence
Translation from 16 to 658
> BO15351.pep
MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRG
GNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNS
IVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKK
YLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY
LKKIKSKKASFLDH
BO15351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS8-PG | 208 | CG7808-PG | 1..208 | 1..208 | 1068 | 100 | Plus |
RpS8-PF | 208 | CG7808-PF | 1..208 | 1..208 | 1068 | 100 | Plus |
RpS8-PE | 208 | CG7808-PE | 1..208 | 1..208 | 1068 | 100 | Plus |
RpS8-PC | 208 | CG7808-PC | 1..208 | 1..208 | 1068 | 100 | Plus |