Clone Sequence Records
BO15353.3prime Sequence
365 bp (364 high quality bases) assembled on 2006-06-16
> BO15353.3prime
ATGGTCTAGAAAGCTTGCCTCGAGACACTTTCCGAGCCAAGTTTCCTTTG
AGCCGCCGTCGCTCTCGAGTCGCAAATTCACACTGAGCCGGAGTTTTGGA
TTCGGTTTTGGATGCTGGTTGCTTCGCACTCGGATGCTGCTGGTTGTGCT
GCTTTGGTCTTCTGCCGCCGCGGCCAAGGACTCAGGCGCAGGCTGTCGGC
GCAGAAACCATCGCCCCAATTCTCTTCGCCTTGGTCCTTTTAAGAGAGCC
GGAAGAGCGCGTATTAAGTGAAGAGCGGAAGCGCGTGGTGGATTAACCAC
TTGAAAACCGTGGCGCCCGCACTTCAGCAAATGCGTTGCAAATGCACACA
TGTCGACTGATAACT
BO15353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31295-PA | 336 | CG31295-RA | 1..333 | 351..19 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42613-RG | 4961 | CG42613-RG | 51..383 | 351..19 | 1665 | 100 | Minus |
CG42613-RE | 6672 | CG42613-RE | 51..383 | 351..19 | 1665 | 100 | Minus |
CG42613-RH | 4927 | CG42613-RH | 51..383 | 351..19 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18929246..18929565 | 351..32 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:38:06 has no hits.
BO15353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:56 Download gff for
BO15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 16..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:21 Download gff for
BO15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 16..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:26 Download gff for
BO15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..383 | 19..351 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:04 Download gff for
BO15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..383 | 19..351 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:04 Download gff for
BO15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18929246..18929564 | 33..351 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:26 Download gff for
BO15353.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14754968..14755286 | 33..351 | 100 | -> | Minus |
BO15353.5prime Sequence
365 bp (364 high quality bases) assembled on 2006-06-16
> BO15353.5prime
GAAGTTATCAGTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACGCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGG
CAAGCTTTCTAGACC
BO15353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31295-PA | 336 | CG31295-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42613-RG | 4961 | CG42613-RG | 51..383 | 17..349 | 1665 | 100 | Plus |
CG42613-RE | 6672 | CG42613-RE | 51..383 | 17..349 | 1665 | 100 | Plus |
CG42613-RH | 4927 | CG42613-RH | 51..383 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18929246..18929565 | 17..336 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:58:01 has no hits.
BO15353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:57 Download gff for
BO15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:23 Download gff for
BO15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31295-PA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:42 Download gff for
BO15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..383 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:09 Download gff for
BO15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..383 | 17..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:09 Download gff for
BO15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18929246..18929564 | 17..335 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:42 Download gff for
BO15353.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14754968..14755286 | 17..335 | 100 | -> | Plus |
BO15353.complete Sequence
367 bp (367 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633425
> BO15353.complete
GAAGTTATCAGTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACGCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGG
CAAGCTTTCTAGACCAT
BO15353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 20:04:56 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42613-RG | 4961 | CG42613-RG | 51..383 | 17..349 | 1665 | 100 | Plus |
CG42613-RE | 6672 | CG42613-RE | 51..383 | 17..349 | 1665 | 100 | Plus |
CG42613-RH | 4927 | CG42613-RH | 51..383 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18929246..18929565 | 17..336 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:04:55 has no hits.
BO15353.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:14:24 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:53 Download gff for
BO15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..383 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:14:25 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:22 Download gff for
BO15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42613-RH | 51..383 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:22 Download gff for
BO15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18929246..18929564 | 17..335 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:53 Download gff for
BO15353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14754968..14755286 | 17..335 | 100 | -> | Plus |
BO15353.pep Sequence
Translation from 16 to 367
> BO15353.pep
MCAFATHLLKCGRHGFQVVNPPRASALHLIRALPALLKGPRRRELGRWFL
RRQPAPESLAAAAEDQSSTTSSIRVRSNQHPKPNPKLRLSVNLRLESDGG
SKETWLGKCLEASFLDH
Sequence BO15353.pep has no blast hits.