Clone BO15353 Report

Search the DGRC for BO15353

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:53
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO15353.pep: validated full length
Sequenced Size:367

Clone Sequence Records

BO15353.3prime Sequence

365 bp (364 high quality bases) assembled on 2006-06-16

> BO15353.3prime
ATGGTCTAGAAAGCTTGCCTCGAGACACTTTCCGAGCCAAGTTTCCTTTG
AGCCGCCGTCGCTCTCGAGTCGCAAATTCACACTGAGCCGGAGTTTTGGA
TTCGGTTTTGGATGCTGGTTGCTTCGCACTCGGATGCTGCTGGTTGTGCT
GCTTTGGTCTTCTGCCGCCGCGGCCAAGGACTCAGGCGCAGGCTGTCGGC
GCAGAAACCATCGCCCCAATTCTCTTCGCCTTGGTCCTTTTAAGAGAGCC
GGAAGAGCGCGTATTAAGTGAAGAGCGGAAGCGCGTGGTGGATTAACCAC
TTGAAAACCGTGGCGCCCGCACTTCAGCAAATGCGTTGCAAATGCACACA
TGTCGACTGATAACT

BO15353.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31295-PA 336 CG31295-RA 1..333 351..19 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG42613-RG 4961 CG42613-RG 51..383 351..19 1665 100 Minus
CG42613-RE 6672 CG42613-RE 51..383 351..19 1665 100 Minus
CG42613-RH 4927 CG42613-RH 51..383 351..19 1665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18929246..18929565 351..32 1600 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:38:06 has no hits.

BO15353.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:56 Download gff for BO15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 16..351 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:21 Download gff for BO15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 16..351 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:26 Download gff for BO15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..383 19..351 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:04 Download gff for BO15353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..383 19..351 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:04 Download gff for BO15353.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18929246..18929564 33..351 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:26 Download gff for BO15353.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14754968..14755286 33..351 100 -> Minus

BO15353.5prime Sequence

365 bp (364 high quality bases) assembled on 2006-06-16

> BO15353.5prime
GAAGTTATCAGTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACGCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGG
CAAGCTTTCTAGACC

BO15353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31295-PA 336 CG31295-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42613-RG 4961 CG42613-RG 51..383 17..349 1665 100 Plus
CG42613-RE 6672 CG42613-RE 51..383 17..349 1665 100 Plus
CG42613-RH 4927 CG42613-RH 51..383 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18929246..18929565 17..336 1600 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:58:01 has no hits.

BO15353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:45:57 Download gff for BO15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 17..352 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:23 Download gff for BO15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31295-PA 1..336 17..352 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:42 Download gff for BO15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..383 17..349 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:09 Download gff for BO15353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..383 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:09 Download gff for BO15353.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18929246..18929564 17..335 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:42 Download gff for BO15353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14754968..14755286 17..335 100 -> Plus

BO15353.complete Sequence

367 bp (367 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633425

> BO15353.complete
GAAGTTATCAGTCGACATGTGTGCATTTGCAACGCATTTGCTGAAGTGCG
GGCGCCACGGTTTTCAAGTGGTTAATCCACCACGCGCTTCCGCTCTTCAC
TTAATACGCGCTCTTCCGGCTCTCTTAAAAGGACCAAGGCGAAGAGAATT
GGGGCGATGGTTTCTGCGCCGACAGCCTGCGCCTGAGTCCTTGGCCGCGG
CGGCAGAAGACCAAAGCAGCACAACCAGCAGCATCCGAGTGCGAAGCAAC
CAGCATCCAAAACCGAATCCAAAACTCCGGCTCAGTGTGAATTTGCGACT
CGAGAGCGACGGCGGCTCAAAGGAAACTTGGCTCGGAAAGTGTCTCGAGG
CAAGCTTTCTAGACCAT

BO15353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 20:04:56 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42613-RG 4961 CG42613-RG 51..383 17..349 1665 100 Plus
CG42613-RE 6672 CG42613-RE 51..383 17..349 1665 100 Plus
CG42613-RH 4927 CG42613-RH 51..383 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18929246..18929565 17..336 1600 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:04:55 has no hits.

BO15353.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:14:24 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:53 Download gff for BO15353.complete
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..383 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:14:25 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:22 Download gff for BO15353.complete
Subject Subject Range Query Range Percent Splice Strand
CG42613-RH 51..383 17..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:22 Download gff for BO15353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18929246..18929564 17..335 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:53 Download gff for BO15353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14754968..14755286 17..335 100 -> Plus

BO15353.pep Sequence

Translation from 16 to 367

> BO15353.pep
MCAFATHLLKCGRHGFQVVNPPRASALHLIRALPALLKGPRRRELGRWFL
RRQPAPESLAAAAEDQSSTTSSIRVRSNQHPKPNPKLRLSVNLRLESDGG
SKETWLGKCLEASFLDH
Sequence BO15353.pep has no blast hits.