Clone Sequence Records
BO15355.3prime Sequence
620 bp (619 high quality bases) assembled on 2006-06-16
> BO15355.3prime
ATGGTCTAGAAAGCTTGCTTCGGTCTCGTAGAGCTCCTTCTTCCGCAGCT
TCGCTTGCAGAATGTCGTTCTCGTTGTAGGACAGGTGCAGCGGGGGTATC
AGGGCGCAGGCCACCATTCGGTTCTCGGCATTCAGGAAGTTGAAGGTGGC
ACATGCCTGCTCCGTGCGCAGGATCTCTACGTTTATCTTGTACTTCTTCA
TGAACTCGATGATCCTCTTGGAAAGAGCTGGGGGCGGTGCTTGGTCGCCA
ATGCCAATGATAAGCACGTCGATCTTTGGCTCCAGGGTGGGGAAGAGACT
GAGGCTGTCCTCGTTGATGTCCTCAAAGCTGTTGACGTTCCAGGACAGAA
CCGATCTGGGAAACACGGAGATGGGGCCAATGAGGACCATGTCGTTGTTG
AGCCGGAAGCCGTACTGGCTGTAGCCGGTGACCATAAGGCCCAGATCCGT
TTCGGTGTTGAAGATGGTGACTTTGGTCTTCCCGTCGTGGTCGTAGGCCT
TGCTGAAGTTGGCCGGAATAGCGTGAAGTGGGCGACAGGCGGTGATGCGC
GGTAGCAGAAGGTTGCGACCTTGCCGGCCCACCGTTCGCAGGGTGCGCGC
AATCATGTCGACTGATAACT
BO15355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-PA | 591 | CG5569-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..697 | 607..19 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 607..356 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 23866184..23866386 | 358..156 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 23866436..23866577 | 160..19 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:09:29 has no hits.
BO15355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:00 Download gff for
BO15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:28 Download gff for
BO15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:47 Download gff for
BO15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..704 | 11..613 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:42:50 Download gff for
BO15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..704 | 11..613 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:42:50 Download gff for
BO15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865518..23865773 | 356..613 | 98 | -> | Minus |
2R | 23866187..23866385 | 157..355 | 100 | -> | Minus |
2R | 23866440..23866584 | 11..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:47 Download gff for
BO15355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753041..19753296 | 356..613 | 98 | -> | Minus |
arm_2R | 19753710..19753908 | 157..355 | 100 | -> | Minus |
arm_2R | 19753963..19754107 | 11..156 | 97 | | Minus |
BO15355.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-06-16
> BO15355.5prime
GAAGTTATCAGTCGACATGATTGCGCGCACCCTGCGAACGGTGGGCCGGC
AAGGTCGCAACCTTCTGCTACCGCGCATCACCGCCTGTCGCCCACTTCAC
GCTATTCCGGCCAACTTCAGCAAGGCCTACGACCACGACGGGAAGACCAA
AGTCACCATCTTCAACACCGAAACGGATCTGGGCCTTATGGTCACCGGCT
ACAGCCAGTACGGCTTCCGGCTCAACAACGACATGGTCCTCATTGGCCCC
ATCTCCGTGTTTCCCAGATCGGTTCTGTCCTGGAACGTCAACAGCTTTGA
GGACATCAACGAGGACAGCCTCAGTCTCTTCCCCACCCTGGAGCCAAAGA
TCGACGTGCTTATCATTGGCATTGGCGACCAAGCACCGCCCCCAGCTCTT
TCCAAGAGGATCATCGAGTTCATGAAGAAGTACAAGATAAACGTAGAGAT
CCTGCGCACGGAGCAGGCATGTGCCACCTTCAACTTCCTGAATGCCGAGA
ACCGAATGGTGGCCTGCGCCCTGATACCCCCGCTGCACCTGTCCTACAAC
GAGAACGACATTCTGCAAGCGAAGCTGCGGAAGAAGGAGCTCTACGAGAC
CGAAGCAAGCTTTCTAGACC
BO15355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-PA | 591 | CG5569-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..697 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 16..267 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23866184..23866386 | 265..467 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 23866436..23866577 | 463..604 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:18:07 has no hits.
BO15355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:01 Download gff for
BO15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:28 Download gff for
BO15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:44 Download gff for
BO15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..704 | 10..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:45 Download gff for
BO15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 105..704 | 10..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:45 Download gff for
BO15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865518..23865773 | 10..267 | 98 | -> | Plus |
2R | 23866187..23866385 | 268..466 | 100 | -> | Plus |
2R | 23866440..23866584 | 467..612 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:44 Download gff for
BO15355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753041..19753296 | 10..267 | 98 | -> | Plus |
arm_2R | 19753710..19753908 | 268..466 | 100 | -> | Plus |
arm_2R | 19753963..19754107 | 467..612 | 97 | | Plus |
BO15355.complete Sequence
622 bp (622 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633427
> BO15355.complete
GAAGTTATCAGTCGACATGATTGCGCGCACCCTGCGAACGGTGGGCCGGC
AAGGTCGCAACCTTCTGCTACCGCGCATCACCGCCTGTCGCCCACTTCAC
GCTATTCCGGCCAACTTCAGCAAGGCCTACGACCACGACGGGAAGACCAA
AGTCACCATCTTCAACACCGAAACGGATCTGGGCCTTATGGTCACCGGCT
ACAGCCAGTACGGCTTCCGGCTCAACAACGACATGGTCCTCATTGGCCCC
ATCTCCGTGTTTCCCAGATCGGTTCTGTCCTGGAACGTCAACAGCTTTGA
GGACATCAACGAGGACAGCCTCAGTCTCTTCCCCACCCTGGAGCCAAAGA
TCGACGTGCTTATCATTGGCATTGGCGACCAAGCACCGCCCCCAGCTCTT
TCCAAGAGGATCATCGAGTTCATGAAGAAGTACAAGATAAACGTAGAGAT
CCTGCGCACGGAGCAGGCATGTGCCACCTTCAACTTCCTGAATGCCGAGA
ACCGAATGGTGGCCTGCGCCCTGATACCCCCGCTGCACCTGTCCTACAAC
GAGAACGACATTCTGCAAGCGAAGCTGCGGAAGAAGGAGCTCTACGAGAC
CGAAGCAAGCTTTCTAGACCAT
BO15355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 591 | CG5569-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-RA | 774 | CG5569-RA | 109..697 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23865522..23865773 | 16..267 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 23866184..23866386 | 265..467 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 23866436..23866577 | 463..604 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:57 has no hits.
BO15355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:29 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:21 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 98..697 | 10..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:58 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 110..697 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:30 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 98..697 | 10..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:58 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5569-RA | 110..697 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:58 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23865523..23865773 | 17..267 | 100 | -> | Plus |
2R | 23866187..23866385 | 268..466 | 100 | -> | Plus |
2R | 23866440..23866577 | 467..606 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:58 Download gff for
BO15355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19753046..19753296 | 17..267 | 100 | -> | Plus |
arm_2R | 19753710..19753908 | 268..466 | 100 | -> | Plus |
arm_2R | 19753963..19754100 | 467..606 | 98 | | Plus |
BO15355.pep Sequence
Translation from 16 to 622
> BO15355.pep
MIARTLRTVGRQGRNLLLPRITACRPLHAIPANFSKAYDHDGKTKVTIFN
TETDLGLMVTGYSQYGFRLNNDMVLIGPISVFPRSVLSWNVNSFEDINED
SLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKKYKINVEILRTEQ
ACATFNFLNAENRMVACALIPPLHLSYNENDILQAKLRKKELYETEASFL
DH
BO15355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5569-PA | 196 | CG5569-PA | 1..196 | 1..196 | 1011 | 100 | Plus |