Clone Sequence Records
BO15357.3prime Sequence
892 bp (736 high quality bases) assembled on 2006-06-16
> BO15357.3prime
ATGGTCTAGAAAGCTTGCATCCAACCAATCTCGCATATATTCACAAGTTA
TAGCAGTTACATCGCCACAATTGGAGCAGTTTTTGATGACGGGACAAATG
CCACATGGCATCTGGACCAGACCAGTCGGAGGAAGTGGGGCGTTCACCGC
CCGGTAGACGAAGGATCCATCCTGCTGGCGCACTCGTTCCGCATTGCCGT
CGTACACCACTGTTTTGAGAATTGTTTCCAGATCGGCCTCCGCTAGATTA
ACCTTACTGATGCCCAGGTCCGAGATGAACTTCTGAACCTCGTTCACCGT
GCAGCAAGACATCTGCTTGAAGGCCAGTGGCCCCTCGCGCTTCTTTTCCG
CACTGTCGCGTTTCATTTGCAGAAAGCGCAGGCACTGCTGGTTGAGCACA
TCCACAAACTCCACCTCAAAGTCCTGATCCTGGTACCAGGCTCCTCCCGT
AATGGAGAGATCCGGCTCTAGGTTGTACAGCATGTACACTTTCTTTTTGC
TGGCGTTCACCGACTTGACCGCCTTGATGAGCTTCTTGGTTTCTAGGTTC
TTGAGGATCTTGTTGAGCTGTATCATGTTCAGGTTGGACTTCATACGTAT
ATCCCTAATCCAGATGCCTTTGTTGCCGCCCTCCTCAACAATGCCGTAGA
CGACCTTCTCCTCATTGTCCGCATCCTTGGGCAGGGCACTCTTCTTTTCC
GGGTCCTTGGCACGGTACACCAGCTTTTCACCCTTCTTCAGGATCTCGAT
CCCGCCCTCCTGCAGCAGTATATTCAAAGCTTCCACCCGCGTGGCCGCCG
GCACATCGGGCAGCGCCTTGGTCAGGTCATCGTTGGTGGCACCGGCTGGG
ATGCCCTGGACCACCGCCAGCAAAAGTTGCGACACCTCAGTG
BO15357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-PA | 882 | CG5380-RA | 6..879 | 892..19 | 4270 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 91..964 | 892..19 | 4310 | 99.5 | Minus |
| CG5380-RA | 1022 | CG5380-RA | 11..884 | 892..19 | 4310 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366218..22366703 | 19..504 | 2370 | 99.2 | Plus |
| 3R | 32079331 | 3R | 22366761..22367149 | 504..892 | 1945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:34:48 has no hits.
BO15357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:02 Download gff for
BO15357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 6..882 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:30 Download gff for
BO15357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 6..882 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:39 Download gff for
BO15357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 11..884 | 19..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:38:17 Download gff for
BO15357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 11..884 | 19..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:38:17 Download gff for
BO15357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366218..22366703 | 19..504 | 99 | <- | Plus |
| 3R | 22366762..22367149 | 505..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:39 Download gff for
BO15357.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191940..18192425 | 19..504 | 99 | <- | Plus |
| arm_3R | 18192484..18192871 | 505..892 | 100 | | Plus |
BO15357.5prime Sequence
911 bp (822 high quality bases) assembled on 2006-06-16
> BO15357.5prime
GAAGTTATCAGTCGACATGGCCACTGAGGTGTCGCAACTTTTGCTGGCGG
TGGTCCAGGGCATCCCAGCCGGTGCCACCAACGATGACCTGACCAAGGCG
CTGCCCGATGTGCCGGCGGCCACGCGGGTGGAAGCTTTGAATATACTGCT
GCAGGAGGGCGGGATCGAGATCCTGAAGAAGGGTGAAAAGCTGGTGTACC
GTGCCAAGGACCCGGAAAAGAAGAGTGCCCTGCCCAAGGATGCGGACAAT
GAGGAGAAGGTCGTCTACGGCATTGTTGAGGAGGGCGGCAACAAAGGCAT
CTGGATTAGGGATATACGTATGAAGTCCAACCTGAACATGATACAGCTCA
ACAAGATCCTCAAGAACCTAGAAACCAAGAAGCTCATCAAGGCGGTCAAG
TCGGTGAACGCCAGCAAAAAGAAAGTGTACATGCTGTACAACCTAGAGCC
GGATCTCTCCATTACGGGAGGAGCCTGGTACCAGGATCAGGACTTTGAGG
TGGAGTTTGTGGATGTGCTCAACCAGCAGTGCCTGCGCTTTCTGCAAATG
AAACGCGACAGTGCGGAAAAGAAGCGCGAGGGGCCACTGGCCTTCAAGCA
GATGTCTTGCTGCACGGTGAACGAGGTTCAGAAGTTCATCTCGGACCTGG
GCATCAGTAAGGTTAATCTAGCGGAGGCCGATCTGGAAACAATTCTCAAA
ACAGTGGTGTACGACGGCAATGCGGAACGAGTGCGCCAGCAGGATGGATC
CTTCGTCTACCGGGCGGTGAACGCCCCACTTCCTCCGACTGGTCTGGTCC
AGATGCCATGTGGCATTTGTCCCGTCATCAAAAACTGCTCCAATTGTGGC
GATGTAACTGCTATAACTTGTGAATATATGCGAGATTGGTTGGATGCAAG
CTTTCTAGACC
BO15357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-PA | 882 | CG5380-RA | 1..879 | 17..895 | 4295 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 86..964 | 17..895 | 4335 | 99.5 | Plus |
| CG5380-RA | 1022 | CG5380-RA | 6..884 | 17..895 | 4335 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366218..22366703 | 895..410 | 2370 | 99.2 | Minus |
| 3R | 32079331 | 3R | 22366761..22367154 | 410..17 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:49:33 has no hits.
BO15357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:04 Download gff for
BO15357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 1..882 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:31 Download gff for
BO15357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-PA | 1..882 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:42 Download gff for
BO15357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 14..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:08 Download gff for
BO15357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 14..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:08 Download gff for
BO15357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366218..22366703 | 410..895 | 99 | <- | Minus |
| 3R | 22366762..22367160 | 10..409 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:42 Download gff for
BO15357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191940..18192425 | 410..895 | 99 | <- | Minus |
| arm_3R | 18192484..18192882 | 10..409 | 99 | | Minus |
BO15357.complete Sequence
913 bp (913 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633428
> BO15357.complete
GAAGTTATCAGTCGACATGGCCACTGAGGTGTCGCAACTTTTGCTGGCGG
TGGTCCAGGGCATCCCAGCCGGTGCCACCAACGATGACCTGACCAAGGCG
CTGCCCGATGTGCCGGCGGCCACGCGGGTGGAAGCTTTGAATATACTGCT
GCAGGAGGGCGGGATCGAGATCCTGAAGAAGGGTGAAAAGCTGGTGTACC
GTGCCAAGGACCCGGAAAAGAAGAGTGCCCTGCCCAAGGATGCGGACAAT
GAGGAGAAGGTCGTCTACGGCATTGTTGAGGAGGGCGGCAACAAAGGCAT
CTGGATTAGGGATATACGTATGAAGTCCAACCTGAACATGATACAGCTCA
ACAAGATCCTCAAGAACCTAGAAACCAAGAAGCTCATCAAGGCGGTCAAG
TCGGTGAACGCCAGCAAAAAGAAAGTGTACATGCTGTACAACCTAGAGCC
GGATCTCTCCATTACGGGAGGAGCCTGGTACCAGGATCAGGACTTTGAGG
TGGAGTTTGTGGATGTGCTCAACCAGCAGTGCCTGCGCTTTCTGCAAATG
AAACGCGACAGTGCGGAAAAGAAGCGCGAGGGGCCACTGGCCTTCAAGCA
GATGTCTTGCTGCACGGTGAACGAGGTTCAGAAGTTCATCTCGGACCTGG
GCATCAGTAAGGTTAATCTAGCGGAGGCCGATCTGGAAACAATTCTCAAA
ACAGTGGTGTACGACGGCAATGCGGAACGAGTGCGCCAGCAGGATGGATC
CTTCGTCTACCGGGCGGTGAACGCCCCACTTCCTCCGACTGGTCTGGTCC
AGATGCCATGTGGCATTTGTCCCGTCATCAAAAACTGCTCCAATTGTGGC
GATGTAACTGCTATAACTTGTGAATATATGCGAGATTGGTTGGATGCAAG
CTTTCTAGACCAT
BO15357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 882 | CG5380-PB | 1..879 | 17..895 | 4335 | 99.5 | Plus |
| CG5380-RA | 882 | CG5380-PA | 1..879 | 17..895 | 4335 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-RB | 1102 | CG5380-RB | 86..964 | 17..895 | 4335 | 99.5 | Plus |
| CG5380-RA | 1022 | CG5380-RA | 6..884 | 17..895 | 4335 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22366218..22366703 | 895..410 | 2370 | 99.2 | Minus |
| 3R | 32079331 | 3R | 22366761..22367154 | 410..17 | 1970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:33:10 has no hits.
BO15357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:32 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..882 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:22 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 14..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:42 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 6..884 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:33 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 1..884 | 14..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:40 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5380-RA | 6..884 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:40 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22366216..22366703 | 410..897 | 98 | <- | Minus |
| 3R | 22366762..22367154 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:42 Download gff for
BO15357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18191938..18192425 | 410..897 | 98 | <- | Minus |
| arm_3R | 18192484..18192876 | 17..409 | 100 | | Minus |
BO15357.pep Sequence
Translation from 16 to 913
> BO15357.pep
MATEVSQLLLAVVQGIPAGATNDDLTKALPDVPAATRVEALNILLQEGGI
EILKKGEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDI
RMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSIT
GGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCT
VNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRA
VNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLDASFLDH
BO15357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5380-PB | 293 | CG5380-PB | 1..293 | 1..293 | 1507 | 100 | Plus |
| CG5380-PA | 293 | CG5380-PA | 1..293 | 1..293 | 1507 | 100 | Plus |
