Clone Sequence Records
BO15360.3prime Sequence
728 bp (699 high quality bases) assembled on 2006-06-16
> BO15360.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGGGTATATTTGGTGGCAAAGTGGCGA
AGGTGAGGAAGCCCGTGTGACCGGGCAGGGTTTGGGGATTACTGGAGGTC
AGGTACTTCTTCACCTCCTTTGGCGCCTTGCTCTCCAAGGCATTTGTTGC
CGCCGTCGTCTCATCGGTTTTGGGCAATTTAAGGAACTCAAGATCGATGA
CGGGCAGCGTGCGCGTCTTCACCACGTTCTCCTGCTGCAGCACCTCCAAG
GAAACAATCTCGTTGAAGCCCAGCTTGGTTAGCTCTTGGATGCAGCGCTG
CGACTGCTCAATGCAGGGCGAAAACGAACAGAAACGACCTCCGGACAGCT
TCAACGCCTTGAAGGCGTGCGGCACAGCGAGATCGGGCGCGGGCAGATCC
AAGAAGACCGCATCGGCCTTTCCGTCCAGTTCCGCACCAAAGCCCAGATT
GCAAACGTCCCGGTGATAGACGGTGACGAAGTCAGCGATACCATGTCGCC
GGAACTCGTCGCGTGCCTGATCCGCTCGAGCTTCGTGGAAATCGAAGGTG
TGCAGGTGGCCAGTGGGTTTCAGTGCTCTTAGAAAGTAATGCGATAGAGA
CCCCGATCCCGTGCCCGACTCAACCACCACGGCACCGGGTCGGACCTCCA
GCTGGTGGATAATCATACTAATATCCGGCGTGTAAATAATCTGTGTGCGG
TGGGGCAGTGTTTGTGTCCAGAGTTCCG
BO15360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-PA | 954 | CG14544-RA | 242..951 | 728..19 | 3550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 1031 | CG14544-RB | 314..1023 | 728..19 | 3550 | 100 | Minus |
CG14544-RA | 1069 | CG14544-RA | 326..1035 | 728..19 | 3550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26059875..26060262 | 728..341 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 26060936..26061259 | 342..19 | 1620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:15:27 has no hits.
BO15360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:07 Download gff for
BO15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 242..954 | 16..728 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:35 Download gff for
BO15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 242..954 | 16..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:44:27 Download gff for
BO15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 326..1035 | 19..728 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:32 Download gff for
BO15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 326..1035 | 19..728 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:32 Download gff for
BO15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26059875..26060261 | 342..728 | 100 | -> | Minus |
3R | 26060937..26061258 | 20..341 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:44:27 Download gff for
BO15360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21885597..21885983 | 342..728 | 100 | -> | Minus |
arm_3R | 21886659..21886980 | 20..341 | 100 | <- | Minus |
BO15360.5prime Sequence
851 bp (719 high quality bases) assembled on 2006-06-16
> BO15360.5prime
GAAGTTATCAGTCGACATGAGTTTTCTGAAACCCAAGACCCACATAGAAA
AGGGCGATGTGGTCATCCTTTATTTGAGTGTCAGTTCCATGCATGCCATC
GAAGCGGTGCCCGAAATAGTGAACAAAAAGGGCGAAACAATACCGCATAT
TTTTCAGACCAATTATGGATCGCTAAAAGTTGAAAATATCATCGGCGTGG
AGTATGGTAGTAAAGTGGAGCTCTCCAAGGGCTGGGCCCATGTCCTTCAG
CCGACGCCGGAACTCTGGACACAAACACTGCCCCACCGCACACAGATTAT
TTACACGCCGGATATTAGTATGATTATCCACCAGCTGGAGGTCCGACCCG
GTGCCGTGGTGGTTGAGTCGGGCACGGGATCGGGGTCTCTATCGCATTAC
TTTCTAAGAGCACTGAAACCCACTGGCCACCTGCACACCTTCGATTTCCA
CGAAGCTCGAGCGGATCAGGCACGCGACGAGTTCCGGCGACATGGTATCG
CTGACTTCGTCACCGTCTATCACCGGGACGTTTGCAATCTGGGCTTTGGT
GCGGAACTGGACGGAAAGGCCGATGCGGTCTTCTTGGATCTGCCCGCGCC
CGATCTCGCTGTGCCGCACGCCTTCAAGGCGTTGAAGCTGTCCGGAGGTC
GTTTCTGTTCGTTTTCGCCCTGCATTGAGCAGTCGCAGCGCTGCATCCAA
GAGCTAACCAAGCTGGGCTTCAACGAGATTGTTTCCTTGGAGGTGCTGCA
GCAGGAGAACGTGGTGAAGACGCGCACGCTGCCCGTCATCGATCTTGAGT
TCCTTTAATTGCCCAAAACCGATGAAACGACGGCGGCAACAAATGCCTTG
G
BO15360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-PA | 954 | CG14544-RA | 1..835 | 17..851 | 4125 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 1031 | CG14544-RB | 71..907 | 15..851 | 4155 | 99.8 | Plus |
CG14544-RA | 1069 | CG14544-RA | 83..919 | 15..851 | 4155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26059803..26060262 | 186..645 | 2300 | 100 | Plus |
3R | 32079331 | 3R | 26060936..26061143 | 644..851 | 1010 | 99 | Plus |
3R | 32079331 | 3R | 26059578..26059748 | 15..185 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:15:57 has no hits.
BO15360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:08 Download gff for
BO15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:36 Download gff for
BO15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:28:57 Download gff for
BO15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 83..919 | 15..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:02:27 Download gff for
BO15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 83..919 | 15..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:02:27 Download gff for
BO15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26059578..26059748 | 15..185 | 100 | -> | Plus |
3R | 26059803..26060261 | 186..644 | 100 | -> | Plus |
3R | 26060937..26061143 | 645..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:28:57 Download gff for
BO15360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21885300..21885470 | 15..185 | 100 | -> | Plus |
arm_3R | 21885525..21885983 | 186..644 | 100 | -> | Plus |
arm_3R | 21886659..21886865 | 645..851 | 99 | | Plus |
BO15360.complete Sequence
985 bp assembled on 2007-10-17
GenBank Submission: FJ633430
> BO15360.complete
GAAGTTATCAGTCGACATGAGTTTTCTGAAACCCAAGACCCACATAGAAA
AGGGCGATGTGGTCATCCTTTATTTGAGTGTCAGTTCCATGCATGCCATC
GAAGCGGTGCCCGAAATAGTGAACAAAAAGGGCGAAACAATACCGCATAT
TTTTCAGACCAATTATGGATCGCTAAAAGTTGAAAATATCATCGGCGTGG
AGTATGGTAGTAAAGTGGAGCTCTCCAAGGGCTGGGCCCATGTCCTTCAG
CCGACGCCGGAACTCTGGACACAAACACTGCCCCACCGCACACAGATTAT
TTACACGCCGGATATTAGTATGATTATCCACCAGCTGGAGGTCCGACCCG
GTGCCGTGGTGGTTGAGTCGGGCACGGGATCGGGGTCTCTATCGCATTAC
TTTCTAAGAGCACTGAAACCCACTGGCCACCTGCACACCTTCGATTTCCA
CGAAGCTCGAGCGGATCAGGCACGCGACGAGTTCCGGCGACATGGTATCG
CTGACTTCGTCACCGTCTATCACCGGGACGTTTGCAATCTGGGCTTTGGT
GCGGAACTGGACGGAAAGGCCGATGCGGTCTTCTTGGATCTGCCCGCGCC
CGATCTCGCTGTGCCGCACGCCTTCAAGGCGTTGAAGCTGTCCGGAGGTC
GTTTCTGTTCGTTTTCGCCCTGCATTGAGCAGTCGCAGCGCTGCATCCAA
GAGCTAACCAAGCTGGGCTTCAACGAGATTGTTTCCTTGGAGGTGCTGCA
GCAGGAGAACGTGGTGAAGACGCGCACGCTGCCCGTCATCGATCTTGAGT
TCCTTAAATTGCCCAAAACCGATGAGACGACGGCGGCAACAAATGCCTTG
GAGAGCAAGGCGCCAAAGGAGGTGAAGAAGTACCTGACCTCCAGTAATCC
CCAAACCCTGCCCGGTCACACGGGCTTCCTCACCTTCGCCACTTTGCCAC
CAAATATACCCAAGGCCGCAAGCTTTCTAGACCAT
BO15360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 954 | CG14544-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
CG14544-RA | 954 | CG14544-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-RB | 1031 | CG14544-RB | 71..1023 | 15..967 | 4765 | 100 | Plus |
CG14544-RA | 1069 | CG14544-RA | 83..1035 | 15..967 | 4765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26059803..26060262 | 186..645 | 2300 | 100 | Plus |
3R | 32079331 | 3R | 26060936..26061259 | 644..967 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 26059578..26059748 | 15..185 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:55 has no hits.
BO15360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:51 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:18 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 71..1023 | 15..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:06 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 85..1035 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:26 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 73..1023 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:53 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14544-RA | 85..1035 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:53 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26059580..26059748 | 17..185 | 100 | -> | Plus |
3R | 26059803..26060261 | 186..644 | 100 | -> | Plus |
3R | 26060937..26061259 | 645..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:06 Download gff for
BO15360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21885302..21885470 | 17..185 | 100 | -> | Plus |
arm_3R | 21885525..21885983 | 186..644 | 100 | -> | Plus |
arm_3R | 21886659..21886981 | 645..969 | 99 | | Plus |
BO15360.pep Sequence
Translation from 16 to 985
> BO15360.pep
MSFLKPKTHIEKGDVVILYLSVSSMHAIEAVPEIVNKKGETIPHIFQTNY
GSLKVENIIGVEYGSKVELSKGWAHVLQPTPELWTQTLPHRTQIIYTPDI
SMIIHQLEVRPGAVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARAD
QARDEFRRHGIADFVTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVP
HAFKALKLSGGRFCSFSPCIEQSQRCIQELTKLGFNEIVSLEVLQQENVV
KTRTLPVIDLEFLKLPKTDETTAATNALESKAPKEVKKYLTSSNPQTLPG
HTGFLTFATLPPNIPKAASFLDH
BO15360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14544-PB | 317 | CG14544-PB | 1..317 | 1..317 | 1651 | 100 | Plus |
CG14544-PA | 317 | CG14544-PA | 1..317 | 1..317 | 1651 | 100 | Plus |