Clone BO15365 Report

Search the DGRC for BO15365

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptRpS19b-RB
Protein status:BO15365.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO15365.3prime Sequence

497 bp (496 high quality bases) assembled on 2006-06-16

> BO15365.3prime
ATGGTCTAGAAAGCTTGCGGTAGTGATAATCATGGAAACTGGTGCACTGC
GCTCTCGCTGCTTGGCCACAATCTTGTTGGCTATGCGATCCAAGTTACGT
TGTCCTTGCGGAGTCAGCTTACGACCACCATCCGGGTGCCTCTCCACCAT
GTTTGCAGCTTCCAAGGCTTGAAGAGCCTTGCGAATACAGCCATCCGATG
AGCGACAGTGCTTGGACGGACGAACACCGTTGCGCTTGCGCCCGCTATAG
ACCTTGGTGAAGGCCCCAACGCCGGCGGGACTGCGCAGGTACAGGTGTCT
CATAATAGAGGCGCAGCGAGTGTAGAACCAGTCGTCGTCGGTAGGAGCAG
TCTCCTTGAACTTGCCAGTCTTCATATAGACGGCCTGTTCGGGCACAAAA
ATTTTTCCGGATTTTTTGAGAAAAGCAGCCATGTTTTTGGTCAGAACGTG
CTGATCGATTTCCTTTACTGTGACTCCAGGCATGTCGACTGATAACT

BO15365.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5338-PB 468 RpS19b-RB 1..465 483..19 2300 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 659 CG5338-RC 61..527 485..19 2320 99.8 Minus
RpS19b-RB 666 CG5338-RB 68..534 485..19 2320 99.8 Minus
RpS19a-RE 678 CG4464-RE 242..520 334..56 210 73 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23933089..23933397 177..485 1545 100 Plus
3R 32079331 3R 23932861..23933021 19..179 790 99.4 Plus
X 23542271 X 16638484..16638594 334..224 195 78.4 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:20 has no hits.

BO15365.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:11 Download gff for BO15365.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 15..483 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:41 Download gff for BO15365.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 15..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:59 Download gff for BO15365.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..538 14..490 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:53 Download gff for BO15365.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..538 14..490 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:53 Download gff for BO15365.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23932857..23933019 14..177 98 <- Plus
3R 23933090..23933401 178..490 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:59 Download gff for BO15365.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19758579..19758741 14..177 98 <- Plus
arm_3R 19758812..19759123 178..490 99   Plus

BO15365.5prime Sequence

497 bp (496 high quality bases) assembled on 2006-06-16

> BO15365.5prime
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCGCAAGCTTTCTAGACC

BO15365.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5338-PB 468 RpS19b-RB 1..465 17..481 2300 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 659 CG5338-RC 61..527 15..481 2320 99.8 Plus
RpS19b-RB 666 CG5338-RB 68..534 15..481 2320 99.8 Plus
RpS19a-RE 678 CG4464-RE 242..520 166..444 210 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23933089..23933397 323..15 1545 100 Minus
3R 32079331 3R 23932861..23933021 481..321 790 99.4 Minus
X 23542271 X 16638484..16638594 166..276 195 78.4 Plus
Blast to na_te.dros performed on 2015-02-11 09:34:47 has no hits.

BO15365.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:12 Download gff for BO15365.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 17..485 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:42 Download gff for BO15365.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5338-PB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:08 Download gff for BO15365.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..538 10..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:17 Download gff for BO15365.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..538 10..486 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:17 Download gff for BO15365.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23932857..23933019 323..486 98 <- Minus
3R 23933090..23933401 10..322 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:08 Download gff for BO15365.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19758579..19758741 323..486 98 <- Minus
arm_3R 19758812..19759123 10..322 99   Minus

BO15365.complete Sequence

499 bp (499 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633431

> BO15365.complete
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCGCAAGCTTTCTAGACCAT

BO15365.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 468 CG5338-PC 1..465 17..481 2310 99.8 Plus
RpS19b-RB 468 CG5338-PB 1..465 17..481 2310 99.8 Plus
RpS19a-RE 471 CG4464-PE 150..260 166..276 195 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-RC 659 CG5338-RC 61..527 15..481 2320 99.8 Plus
RpS19b-RB 666 CG5338-RB 68..534 15..481 2320 99.8 Plus
RpS19a-RE 678 CG4464-RE 242..352 166..276 195 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23933089..23933397 323..15 1545 100 Minus
3R 32079331 3R 23932861..23933021 481..321 790 99.4 Minus
X 23542271 X 16638484..16638594 166..276 195 78.4 Plus
Blast to na_te.dros performed on 2014-11-27 10:09:59 has no hits.

BO15365.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:44 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:40 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..538 10..486 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:32 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 70..534 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:44 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 64..538 10..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:40 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19b-RB 70..534 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:40 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23932859..23933019 323..483 98 <- Minus
3R 23933090..23933395 17..322 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:32 Download gff for BO15365.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19758581..19758741 323..483 98 <- Minus
arm_3R 19758812..19759117 17..322 100   Minus

BO15365.pep Sequence

Translation from 16 to 499

> BO15365.pep
MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDD
DWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCI
RKALQALEAANMVERHPDGGRKLTPQGQRNLDRIANKIVAKQRERSAPVS
MIITTASFLDH

BO15365.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19b-PC 155 CG5338-PC 1..155 1..155 807 100 Plus
RpS19b-PB 155 CG5338-PB 1..155 1..155 807 100 Plus
RpS19a-PE 156 CG4464-PE 1..153 1..153 541 66.7 Plus
RpS19a-PA 156 CG4464-PA 1..153 1..153 541 66.7 Plus
RpS19a-PC 156 CG4464-PC 1..153 1..153 541 66.7 Plus