Clone Sequence Records
BO15365.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-06-16
> BO15365.3prime
ATGGTCTAGAAAGCTTGCGGTAGTGATAATCATGGAAACTGGTGCACTGC
GCTCTCGCTGCTTGGCCACAATCTTGTTGGCTATGCGATCCAAGTTACGT
TGTCCTTGCGGAGTCAGCTTACGACCACCATCCGGGTGCCTCTCCACCAT
GTTTGCAGCTTCCAAGGCTTGAAGAGCCTTGCGAATACAGCCATCCGATG
AGCGACAGTGCTTGGACGGACGAACACCGTTGCGCTTGCGCCCGCTATAG
ACCTTGGTGAAGGCCCCAACGCCGGCGGGACTGCGCAGGTACAGGTGTCT
CATAATAGAGGCGCAGCGAGTGTAGAACCAGTCGTCGTCGGTAGGAGCAG
TCTCCTTGAACTTGCCAGTCTTCATATAGACGGCCTGTTCGGGCACAAAA
ATTTTTCCGGATTTTTTGAGAAAAGCAGCCATGTTTTTGGTCAGAACGTG
CTGATCGATTTCCTTTACTGTGACTCCAGGCATGTCGACTGATAACT
BO15365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5338-PB | 468 | RpS19b-RB | 1..465 | 483..19 | 2300 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 659 | CG5338-RC | 61..527 | 485..19 | 2320 | 99.8 | Minus |
RpS19b-RB | 666 | CG5338-RB | 68..534 | 485..19 | 2320 | 99.8 | Minus |
RpS19a-RE | 678 | CG4464-RE | 242..520 | 334..56 | 210 | 73 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23933089..23933397 | 177..485 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 23932861..23933021 | 19..179 | 790 | 99.4 | Plus |
X | 23542271 | X | 16638484..16638594 | 334..224 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:20 has no hits.
BO15365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:11 Download gff for
BO15365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:41 Download gff for
BO15365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:59 Download gff for
BO15365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..538 | 14..490 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:53 Download gff for
BO15365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..538 | 14..490 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:53 Download gff for
BO15365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23932857..23933019 | 14..177 | 98 | <- | Plus |
3R | 23933090..23933401 | 178..490 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:59 Download gff for
BO15365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19758579..19758741 | 14..177 | 98 | <- | Plus |
arm_3R | 19758812..19759123 | 178..490 | 99 | | Plus |
BO15365.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-06-16
> BO15365.5prime
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCGCAAGCTTTCTAGACC
BO15365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5338-PB | 468 | RpS19b-RB | 1..465 | 17..481 | 2300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 659 | CG5338-RC | 61..527 | 15..481 | 2320 | 99.8 | Plus |
RpS19b-RB | 666 | CG5338-RB | 68..534 | 15..481 | 2320 | 99.8 | Plus |
RpS19a-RE | 678 | CG4464-RE | 242..520 | 166..444 | 210 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23933089..23933397 | 323..15 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 23932861..23933021 | 481..321 | 790 | 99.4 | Minus |
X | 23542271 | X | 16638484..16638594 | 166..276 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:47 has no hits.
BO15365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:12 Download gff for
BO15365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:42 Download gff for
BO15365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5338-PB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:08 Download gff for
BO15365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..538 | 10..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:17 Download gff for
BO15365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..538 | 10..486 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:17 Download gff for
BO15365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23932857..23933019 | 323..486 | 98 | <- | Minus |
3R | 23933090..23933401 | 10..322 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:08 Download gff for
BO15365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19758579..19758741 | 323..486 | 98 | <- | Minus |
arm_3R | 19758812..19759123 | 10..322 | 99 | | Minus |
BO15365.complete Sequence
499 bp (499 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633431
> BO15365.complete
GAAGTTATCAGTCGACATGCCTGGAGTCACAGTAAAGGAAATCGATCAGC
ACGTTCTGACCAAAAACATGGCTGCTTTTCTCAAAAAATCCGGAAAAATT
TTTGTGCCCGAACAGGCCGTCTATATGAAGACTGGCAAGTTCAAGGAGAC
TGCTCCTACCGACGACGACTGGTTCTACACTCGCTGCGCCTCTATTATGA
GACACCTGTACCTGCGCAGTCCCGCCGGCGTTGGGGCCTTCACCAAGGTC
TATAGCGGGCGCAAGCGCAACGGTGTTCGTCCGTCCAAGCACTGTCGCTC
ATCGGATGGCTGTATTCGCAAGGCTCTTCAAGCCTTGGAAGCTGCAAACA
TGGTGGAGAGGCACCCGGATGGTGGTCGTAAGCTGACTCCGCAAGGACAA
CGTAACTTGGATCGCATAGCCAACAAGATTGTGGCCAAGCAGCGAGAGCG
CAGTGCACCAGTTTCCATGATTATCACTACCGCAAGCTTTCTAGACCAT
BO15365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 468 | CG5338-PC | 1..465 | 17..481 | 2310 | 99.8 | Plus |
RpS19b-RB | 468 | CG5338-PB | 1..465 | 17..481 | 2310 | 99.8 | Plus |
RpS19a-RE | 471 | CG4464-PE | 150..260 | 166..276 | 195 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-RC | 659 | CG5338-RC | 61..527 | 15..481 | 2320 | 99.8 | Plus |
RpS19b-RB | 666 | CG5338-RB | 68..534 | 15..481 | 2320 | 99.8 | Plus |
RpS19a-RE | 678 | CG4464-RE | 242..352 | 166..276 | 195 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23933089..23933397 | 323..15 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 23932861..23933021 | 481..321 | 790 | 99.4 | Minus |
X | 23542271 | X | 16638484..16638594 | 166..276 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:59 has no hits.
BO15365.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:44 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:40 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..538 | 10..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:32 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 70..534 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:44 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 64..538 | 10..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:40 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19b-RB | 70..534 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:40 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23932859..23933019 | 323..483 | 98 | <- | Minus |
3R | 23933090..23933395 | 17..322 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:32 Download gff for
BO15365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19758581..19758741 | 323..483 | 98 | <- | Minus |
arm_3R | 19758812..19759117 | 17..322 | 100 | | Minus |
BO15365.pep Sequence
Translation from 16 to 499
> BO15365.pep
MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDD
DWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCI
RKALQALEAANMVERHPDGGRKLTPQGQRNLDRIANKIVAKQRERSAPVS
MIITTASFLDH
BO15365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19b-PC | 155 | CG5338-PC | 1..155 | 1..155 | 807 | 100 | Plus |
RpS19b-PB | 155 | CG5338-PB | 1..155 | 1..155 | 807 | 100 | Plus |
RpS19a-PE | 156 | CG4464-PE | 1..153 | 1..153 | 541 | 66.7 | Plus |
RpS19a-PA | 156 | CG4464-PA | 1..153 | 1..153 | 541 | 66.7 | Plus |
RpS19a-PC | 156 | CG4464-PC | 1..153 | 1..153 | 541 | 66.7 | Plus |