Clone BO15369 Report

Search the DGRC for BO15369

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptArpc3B-RA
Protein status:BO15369.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO15369.3prime Sequence

554 bp (553 high quality bases) assembled on 2006-06-16

> BO15369.3prime
ATGGTCTAGAAAGCTTGCCATTCCCGGTCCCGAAAGACTCTTCTCCATGA
ACTTCTTCTTGGCAAAGCATATCCACCACTTGCTCGGCTTTCCATCCGGA
GTATCGAAGACCTTTTCCAGCAATCTGTTTCCGGTTTCCTGGCGCAACTG
CAGGAAGTACTGACGCATCAGCTCCGGATCCTCGGGCTTGGTGTATATTC
CGTTCAGCGGAAATCCCGCATCTCCGGGTATATCGAACCGCGAGATGGCC
AGCGTATAGAGCTCCTGCTGACCCTGCGATTTGCTTGTGCATCGGGCCAA
TCGCTTCAAACATTCCGTGATGTAGAGCGTTATGTAGATGAGCACCCTGT
CCACCTCCGACTTAACTTCGTAAGTGCGGAAGAAAATGTTCGATTTCCAG
AAGTAGAGTGACTCATCGATGATGTCGTTGGGAATATCAACAGTGGGCGC
TGGTCCTCGGACTTGGGTACGTAGTGGTAGAAGGGCCATATTCCCCACCG
AGGCTTGGAAATCCTCTATTTCCGAGTGAAATGCCGGCATGTCGACTGAT
AACT

BO15369.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8936-PA 525 Arpc3B-RA 1..522 540..19 2585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 673 CG8936-RA 78..599 540..19 2595 99.8 Minus
Arpc3B-RC 693 CG8936-RC 103..619 535..19 2570 99.8 Minus
Arpc3B-RB 783 CG8936-RB 193..709 535..19 2570 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17104645..17104988 19..362 1705 99.7 Plus
X 23542271 X 17105483..17105657 361..535 875 100 Plus
3R 32079331 3R 15835384..15835544 182..22 325 80.1 Minus
Blast to na_te.dros performed on 2015-02-12 18:14:57 has no hits.

BO15369.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:14 Download gff for BO15369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 15..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:46 Download gff for BO15369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 15..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:50:17 Download gff for BO15369.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..602 15..549 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:48 Download gff for BO15369.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..602 15..549 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:48 Download gff for BO15369.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17104641..17104986 15..360 99 <- Plus
X 17105483..17105664 361..545 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:50:17 Download gff for BO15369.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16998674..16999019 15..360 99 <- Plus
arm_X 16999516..16999697 361..545 97   Plus

BO15369.5prime Sequence

554 bp (553 high quality bases) assembled on 2006-05-29

> BO15369.5prime
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGGCAAGCTTTCTA
GACC

BO15369.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8936-PA 525 Arpc3B-RA 1..522 17..538 2585 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 673 CG8936-RA 78..599 17..538 2595 99.8 Plus
Arpc3B-RC 693 CG8936-RC 103..619 22..538 2570 99.8 Plus
Arpc3B-RB 783 CG8936-RB 193..709 22..538 2570 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17104645..17104988 538..195 1705 99.7 Minus
X 23542271 X 17105483..17105657 196..22 875 100 Minus
3R 32079331 3R 15835384..15835544 375..535 325 80.1 Plus
Blast to na_te.dros performed on 2015-02-11 10:47:32 has no hits.

BO15369.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:15 Download gff for BO15369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 17..542 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:48 Download gff for BO15369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8936-PA 1..525 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:12 Download gff for BO15369.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..602 8..542 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:15 Download gff for BO15369.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..602 8..542 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:15 Download gff for BO15369.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17104641..17104986 197..542 99 <- Minus
X 17105483..17105664 12..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:12 Download gff for BO15369.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16998674..16999019 197..542 99 <- Minus
arm_X 16999516..16999697 12..196 97   Minus

BO15369.complete Sequence

556 bp assembled on 2007-10-17

GenBank Submission: FJ633432

> BO15369.complete
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGGCAAGCTTTCTA
GACCAT

BO15369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 525 CG8936-PA 1..522 17..538 2595 99.8 Plus
Arpc3B-RC 474 CG8936-PC 1..471 68..538 2340 99.8 Plus
Arpc3B-RB 474 CG8936-PB 1..471 68..538 2340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-RA 673 CG8936-RA 78..599 17..538 2595 99.8 Plus
Arpc3B-RC 693 CG8936-RC 103..619 22..538 2570 99.8 Plus
Arpc3B-RB 783 CG8936-RB 193..709 22..538 2570 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17104645..17104988 538..195 1705 99.7 Minus
X 23542271 X 17105483..17105657 196..22 875 100 Minus
3R 32079331 3R 15835384..15835544 375..535 325 80.1 Plus
Blast to na_te.dros performed on 2014-11-27 10:59:47 has no hits.

BO15369.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:52 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 1..525 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:20 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 70..602 8..542 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:48 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 78..599 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:30 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 78..599 17..540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:07 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc3B-RA 78..599 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:07 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
X 17104643..17104986 197..540 99 <- Minus
X 17105483..17105660 17..196 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:48 Download gff for BO15369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16998676..16999019 197..540 99 <- Minus
arm_X 16999516..16999693 17..196 98   Minus

BO15369.pep Sequence

Translation from 16 to 556

> BO15369.pep
MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKS
NIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAIS
RFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDG
KPSKWWICFAKKKFMEKSLSGPGMASFLDH

BO15369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc3B-PA 174 CG8936-PA 1..174 1..174 922 100 Plus
Arpc3B-PC 157 CG8936-PC 1..157 18..174 833 100 Plus
Arpc3B-PB 157 CG8936-PB 1..157 18..174 833 100 Plus
Arpc3A-PE 177 CG4560-PE 1..176 1..173 721 73.9 Plus
Arpc3A-PC 177 CG4560-PC 1..176 1..173 721 73.9 Plus