Clone Sequence Records
BO15369.3prime Sequence
554 bp (553 high quality bases) assembled on 2006-06-16
> BO15369.3prime
ATGGTCTAGAAAGCTTGCCATTCCCGGTCCCGAAAGACTCTTCTCCATGA
ACTTCTTCTTGGCAAAGCATATCCACCACTTGCTCGGCTTTCCATCCGGA
GTATCGAAGACCTTTTCCAGCAATCTGTTTCCGGTTTCCTGGCGCAACTG
CAGGAAGTACTGACGCATCAGCTCCGGATCCTCGGGCTTGGTGTATATTC
CGTTCAGCGGAAATCCCGCATCTCCGGGTATATCGAACCGCGAGATGGCC
AGCGTATAGAGCTCCTGCTGACCCTGCGATTTGCTTGTGCATCGGGCCAA
TCGCTTCAAACATTCCGTGATGTAGAGCGTTATGTAGATGAGCACCCTGT
CCACCTCCGACTTAACTTCGTAAGTGCGGAAGAAAATGTTCGATTTCCAG
AAGTAGAGTGACTCATCGATGATGTCGTTGGGAATATCAACAGTGGGCGC
TGGTCCTCGGACTTGGGTACGTAGTGGTAGAAGGGCCATATTCCCCACCG
AGGCTTGGAAATCCTCTATTTCCGAGTGAAATGCCGGCATGTCGACTGAT
AACT
BO15369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8936-PA | 525 | Arpc3B-RA | 1..522 | 540..19 | 2585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 673 | CG8936-RA | 78..599 | 540..19 | 2595 | 99.8 | Minus |
Arpc3B-RC | 693 | CG8936-RC | 103..619 | 535..19 | 2570 | 99.8 | Minus |
Arpc3B-RB | 783 | CG8936-RB | 193..709 | 535..19 | 2570 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17104645..17104988 | 19..362 | 1705 | 99.7 | Plus |
X | 23542271 | X | 17105483..17105657 | 361..535 | 875 | 100 | Plus |
3R | 32079331 | 3R | 15835384..15835544 | 182..22 | 325 | 80.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:14:57 has no hits.
BO15369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:14 Download gff for
BO15369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:46 Download gff for
BO15369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:50:17 Download gff for
BO15369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..602 | 15..549 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:48 Download gff for
BO15369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..602 | 15..549 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:48 Download gff for
BO15369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17104641..17104986 | 15..360 | 99 | <- | Plus |
X | 17105483..17105664 | 361..545 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:50:17 Download gff for
BO15369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16998674..16999019 | 15..360 | 99 | <- | Plus |
arm_X | 16999516..16999697 | 361..545 | 97 | | Plus |
BO15369.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-05-29
> BO15369.5prime
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGGCAAGCTTTCTA
GACC
BO15369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8936-PA | 525 | Arpc3B-RA | 1..522 | 17..538 | 2585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 673 | CG8936-RA | 78..599 | 17..538 | 2595 | 99.8 | Plus |
Arpc3B-RC | 693 | CG8936-RC | 103..619 | 22..538 | 2570 | 99.8 | Plus |
Arpc3B-RB | 783 | CG8936-RB | 193..709 | 22..538 | 2570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17104645..17104988 | 538..195 | 1705 | 99.7 | Minus |
X | 23542271 | X | 17105483..17105657 | 196..22 | 875 | 100 | Minus |
3R | 32079331 | 3R | 15835384..15835544 | 375..535 | 325 | 80.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:47:32 has no hits.
BO15369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:15 Download gff for
BO15369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:48 Download gff for
BO15369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8936-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:12 Download gff for
BO15369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..602 | 8..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:15 Download gff for
BO15369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..602 | 8..542 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:15 Download gff for
BO15369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17104641..17104986 | 197..542 | 99 | <- | Minus |
X | 17105483..17105664 | 12..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:12 Download gff for
BO15369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16998674..16999019 | 197..542 | 99 | <- | Minus |
arm_X | 16999516..16999697 | 12..196 | 97 | | Minus |
BO15369.complete Sequence
556 bp assembled on 2007-10-17
GenBank Submission: FJ633432
> BO15369.complete
GAAGTTATCAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCC
AAGCCTCGGTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGA
GGACCAGCGCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACT
CTACTTCTGGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGG
AGGTGGACAGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTG
AAGCGATTGGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTA
TACGCTGGCCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGC
TGAACGGAATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTAC
TTCCTGCAGTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTT
CGATACTCCGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGA
AGAAGTTCATGGAGAAGAGTCTTTCGGGACCGGGAATGGCAAGCTTTCTA
GACCAT
BO15369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 525 | CG8936-PA | 1..522 | 17..538 | 2595 | 99.8 | Plus |
Arpc3B-RC | 474 | CG8936-PC | 1..471 | 68..538 | 2340 | 99.8 | Plus |
Arpc3B-RB | 474 | CG8936-PB | 1..471 | 68..538 | 2340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-RA | 673 | CG8936-RA | 78..599 | 17..538 | 2595 | 99.8 | Plus |
Arpc3B-RC | 693 | CG8936-RC | 103..619 | 22..538 | 2570 | 99.8 | Plus |
Arpc3B-RB | 783 | CG8936-RB | 193..709 | 22..538 | 2570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17104645..17104988 | 538..195 | 1705 | 99.7 | Minus |
X | 23542271 | X | 17105483..17105657 | 196..22 | 875 | 100 | Minus |
3R | 32079331 | 3R | 15835384..15835544 | 375..535 | 325 | 80.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:59:47 has no hits.
BO15369.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:52 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:20 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 70..602 | 8..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:48 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 78..599 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:30 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 78..599 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:07 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc3B-RA | 78..599 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:07 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17104643..17104986 | 197..540 | 99 | <- | Minus |
X | 17105483..17105660 | 17..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:48 Download gff for
BO15369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16998676..16999019 | 197..540 | 99 | <- | Minus |
arm_X | 16999516..16999693 | 17..196 | 98 | | Minus |
BO15369.pep Sequence
Translation from 16 to 556
> BO15369.pep
MPAFHSEIEDFQASVGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKS
NIFFRTYEVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAIS
RFDIPGDAGFPLNGIYTKPEDPELMRQYFLQLRQETGNRLLEKVFDTPDG
KPSKWWICFAKKKFMEKSLSGPGMASFLDH
BO15369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc3B-PA | 174 | CG8936-PA | 1..174 | 1..174 | 922 | 100 | Plus |
Arpc3B-PC | 157 | CG8936-PC | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3B-PB | 157 | CG8936-PB | 1..157 | 18..174 | 833 | 100 | Plus |
Arpc3A-PE | 177 | CG4560-PE | 1..176 | 1..173 | 721 | 73.9 | Plus |
Arpc3A-PC | 177 | CG4560-PC | 1..176 | 1..173 | 721 | 73.9 | Plus |