Clone BO15371 Report

Search the DGRC for BO15371

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG4210-RA
Protein status:BO15371.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO15371.3prime Sequence

554 bp (553 high quality bases) assembled on 2006-06-16

> BO15371.3prime
ATGGTCTAGAAAGCTTGCAGATTTTTTTGCCCTCAGATCCGCGGCCAATT
TGGCCAGTTGTTGCTCCTCCACGCGGTAGTAGTGCCAGCCCTCTTTATCT
GTCAAATCCACGGCACCAAGACTTTCGTAGAACTTGCGTGCAGGATTCCA
TTCCAGTACATTAAACTCCAGGCGAGGGCACTGAAGCTCTACAGCCCGCG
ATGCAACCTCCAAGAAGATTCGCTTTCCGGCGCCGCGTTTACGGTGCTCG
GGGCGGACATAGATGTCCTCGACGAAGAAGTACCGTCCCTGCCACGTTGA
GTATGCCTTGTAGCAAATGGAGTACCCAATCGCCTGATCAGTATCGTTGT
CTACAAGCACATAGACTTCACAATACTCCTGGCCACCAGTGAGTCCTGCG
TCTCGTTTAAGATCTTCCTCTGTTAGCTGGGGACCATTGCTCATCTTCTC
AAAGTCAGCCAGTTCTTGAATCATGGAGAGCACATCTTTAATATCTTCAG
CTAGAGCACGCCGGAATGTAAACTCTCCGGATTTCGACATGTCGACTGAT
AACT

BO15371.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 525 CG4210-RA 1..522 540..19 2610 100 Minus
CG4210-PB 429 CG4210-RB 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 60..581 540..19 2610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214744 337..19 1595 100 Minus
3R 32079331 3R 15214288..15214365 415..338 390 100 Minus
3R 32079331 3R 15214033..15214108 540..465 380 100 Minus
3R 32079331 3R 15214170..15214221 465..414 260 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:30 has no hits.

BO15371.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:16 Download gff for BO15371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 1..525 15..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:49 Download gff for BO15371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 1..525 15..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:01 Download gff for BO15371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 60..587 11..540 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:12 Download gff for BO15371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 60..587 11..540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:12 Download gff for BO15371.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15214033..15214107 466..540 100 -> Minus
3R 15214170..15214221 414..465 100 -> Minus
3R 15214290..15214365 338..413 100 -> Minus
3R 15214426..15214750 11..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:01 Download gff for BO15371.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11039755..11039829 466..540 100 -> Minus
arm_3R 11039892..11039943 414..465 100 -> Minus
arm_3R 11040012..11040087 338..413 100 -> Minus
arm_3R 11040148..11040472 11..337 99   Minus

BO15371.5prime Sequence

554 bp (553 high quality bases) assembled on 2006-05-29

> BO15371.5prime
GAAGTTATCACTCGACATGTCGAAATCCGGAGAGTTTACATTCCGGCGTG
CTCTAGCTGAAGATATTAAAGATGTGCTCTCCATGATTCAAGAACTGGCT
GACTTTGAGAAGATGAGCAATGGTCCCCAGCTAACAGAGGAAGATCTTAA
ACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTATGTGC
TTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTACAAG
GCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCTATGT
CCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTGGAGG
TTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAATGTA
CTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCGTGGA
TTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAACAAC
TGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTTTCTA
GACC

BO15371.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 525 CG4210-RA 1..522 17..538 2610 100 Plus
CG4210-PB 429 CG4210-RB 1..426 113..538 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 60..581 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214744 220..538 1595 100 Plus
3R 32079331 3R 15214288..15214365 142..219 390 100 Plus
3R 32079331 3R 15214033..15214108 17..92 380 100 Plus
3R 32079331 3R 15214170..15214221 92..143 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:01:14 has no hits.

BO15371.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:17 Download gff for BO15371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 1..525 17..542 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:50 Download gff for BO15371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-PA 1..525 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:37 Download gff for BO15371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 53..587 8..546 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:29 Download gff for BO15371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 53..587 8..546 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:29 Download gff for BO15371.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15214026..15214107 8..91 95 -> Plus
3R 15214170..15214221 92..143 100 -> Plus
3R 15214290..15214365 144..219 100 -> Plus
3R 15214426..15214750 220..546 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:37 Download gff for BO15371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11039748..11039829 8..91 95 -> Plus
arm_3R 11039892..11039943 92..143 100 -> Plus
arm_3R 11040012..11040087 144..219 100 -> Plus
arm_3R 11040148..11040472 220..546 99   Plus

BO15371.complete Sequence

556 bp (556 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ638738

> BO15371.complete
GAAGTTATCAGTCGACATGTCGAAATCCGGAGAGTTTACATTCCGGCGTG
CTCTAGCTGAAGATATTAAAGATGTGCTCTCCATGATTCAAGAACTGGCT
GACTTTGAGAAGATGAGCAATGGTCCCCAGCTAACAGAGGAAGATCTTAA
ACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTATGTGC
TTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTACAAG
GCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCTATGT
CCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTGGAGG
TTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAATGTA
CTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCGTGGA
TTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAACAAC
TGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTTTCTA
GACCAT

BO15371.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 525 CG4210-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-RA 682 CG4210-RA 60..581 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15214426..15214744 220..538 1595 100 Plus
3R 32079331 3R 15214288..15214365 142..219 390 100 Plus
3R 32079331 3R 15214033..15214108 17..92 380 100 Plus
3R 32079331 3R 15214170..15214221 92..143 260 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:22:48 has no hits.

BO15371.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:07 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 1..525 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:55 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 60..587 17..546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:01 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 60..581 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:07 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 60..587 17..546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:00 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
CG4210-RA 60..581 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:00 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15214033..15214107 17..91 100 -> Plus
3R 15214170..15214221 92..143 100 -> Plus
3R 15214290..15214365 144..219 100 -> Plus
3R 15214426..15214744 220..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:01 Download gff for BO15371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11039755..11039829 17..91 100 -> Plus
arm_3R 11039892..11039943 92..143 100 -> Plus
arm_3R 11040012..11040087 144..219 100 -> Plus
arm_3R 11040148..11040466 220..540 99   Plus

BO15371.pep Sequence

Translation from 16 to 556

> BO15371.pep
MSKSGEFTFRRALAEDIKDVLSMIQELADFEKMSNGPQLTEEDLKRDAGL
TGGQEYCEVYVLVDNDTDQAIGYSICYKAYSTWQGRYFFVEDIYVRPEHR
KRGAGKRIFLEVASRAVELQCPRLEFNVLEWNPARKFYESLGAVDLTDKE
GWHYYRVEEQQLAKLAADLRAKKSASFLDH

BO15371.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4210-PA 174 CG4210-PA 1..174 1..174 912 100 Plus