Clone Sequence Records
BO15371.3prime Sequence
554 bp (553 high quality bases) assembled on 2006-06-16
> BO15371.3prime
ATGGTCTAGAAAGCTTGCAGATTTTTTTGCCCTCAGATCCGCGGCCAATT
TGGCCAGTTGTTGCTCCTCCACGCGGTAGTAGTGCCAGCCCTCTTTATCT
GTCAAATCCACGGCACCAAGACTTTCGTAGAACTTGCGTGCAGGATTCCA
TTCCAGTACATTAAACTCCAGGCGAGGGCACTGAAGCTCTACAGCCCGCG
ATGCAACCTCCAAGAAGATTCGCTTTCCGGCGCCGCGTTTACGGTGCTCG
GGGCGGACATAGATGTCCTCGACGAAGAAGTACCGTCCCTGCCACGTTGA
GTATGCCTTGTAGCAAATGGAGTACCCAATCGCCTGATCAGTATCGTTGT
CTACAAGCACATAGACTTCACAATACTCCTGGCCACCAGTGAGTCCTGCG
TCTCGTTTAAGATCTTCCTCTGTTAGCTGGGGACCATTGCTCATCTTCTC
AAAGTCAGCCAGTTCTTGAATCATGGAGAGCACATCTTTAATATCTTCAG
CTAGAGCACGCCGGAATGTAAACTCTCCGGATTTCGACATGTCGACTGAT
AACT
BO15371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 525 | CG4210-RA | 1..522 | 540..19 | 2610 | 100 | Minus |
CG4210-PB | 429 | CG4210-RB | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 60..581 | 540..19 | 2610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214744 | 337..19 | 1595 | 100 | Minus |
3R | 32079331 | 3R | 15214288..15214365 | 415..338 | 390 | 100 | Minus |
3R | 32079331 | 3R | 15214033..15214108 | 540..465 | 380 | 100 | Minus |
3R | 32079331 | 3R | 15214170..15214221 | 465..414 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:30 has no hits.
BO15371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:16 Download gff for
BO15371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:49 Download gff for
BO15371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:49:01 Download gff for
BO15371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 60..587 | 11..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:02:12 Download gff for
BO15371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 60..587 | 11..540 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:02:12 Download gff for
BO15371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214033..15214107 | 466..540 | 100 | -> | Minus |
3R | 15214170..15214221 | 414..465 | 100 | -> | Minus |
3R | 15214290..15214365 | 338..413 | 100 | -> | Minus |
3R | 15214426..15214750 | 11..337 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:49:01 Download gff for
BO15371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11039755..11039829 | 466..540 | 100 | -> | Minus |
arm_3R | 11039892..11039943 | 414..465 | 100 | -> | Minus |
arm_3R | 11040012..11040087 | 338..413 | 100 | -> | Minus |
arm_3R | 11040148..11040472 | 11..337 | 99 | | Minus |
BO15371.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-05-29
> BO15371.5prime
GAAGTTATCACTCGACATGTCGAAATCCGGAGAGTTTACATTCCGGCGTG
CTCTAGCTGAAGATATTAAAGATGTGCTCTCCATGATTCAAGAACTGGCT
GACTTTGAGAAGATGAGCAATGGTCCCCAGCTAACAGAGGAAGATCTTAA
ACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTATGTGC
TTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTACAAG
GCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCTATGT
CCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTGGAGG
TTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAATGTA
CTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCGTGGA
TTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAACAAC
TGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTTTCTA
GACC
BO15371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 525 | CG4210-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
CG4210-PB | 429 | CG4210-RB | 1..426 | 113..538 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 60..581 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214744 | 220..538 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 15214288..15214365 | 142..219 | 390 | 100 | Plus |
3R | 32079331 | 3R | 15214033..15214108 | 17..92 | 380 | 100 | Plus |
3R | 32079331 | 3R | 15214170..15214221 | 92..143 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:01:14 has no hits.
BO15371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:17 Download gff for
BO15371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:50 Download gff for
BO15371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:37 Download gff for
BO15371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 53..587 | 8..546 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:29 Download gff for
BO15371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 53..587 | 8..546 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:29 Download gff for
BO15371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214026..15214107 | 8..91 | 95 | -> | Plus |
3R | 15214170..15214221 | 92..143 | 100 | -> | Plus |
3R | 15214290..15214365 | 144..219 | 100 | -> | Plus |
3R | 15214426..15214750 | 220..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:37 Download gff for
BO15371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11039748..11039829 | 8..91 | 95 | -> | Plus |
arm_3R | 11039892..11039943 | 92..143 | 100 | -> | Plus |
arm_3R | 11040012..11040087 | 144..219 | 100 | -> | Plus |
arm_3R | 11040148..11040472 | 220..546 | 99 | | Plus |
BO15371.complete Sequence
556 bp (556 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ638738
> BO15371.complete
GAAGTTATCAGTCGACATGTCGAAATCCGGAGAGTTTACATTCCGGCGTG
CTCTAGCTGAAGATATTAAAGATGTGCTCTCCATGATTCAAGAACTGGCT
GACTTTGAGAAGATGAGCAATGGTCCCCAGCTAACAGAGGAAGATCTTAA
ACGAGACGCAGGACTCACTGGTGGCCAGGAGTATTGTGAAGTCTATGTGC
TTGTAGACAACGATACTGATCAGGCGATTGGGTACTCCATTTGCTACAAG
GCATACTCAACGTGGCAGGGACGGTACTTCTTCGTCGAGGACATCTATGT
CCGCCCCGAGCACCGTAAACGCGGCGCCGGAAAGCGAATCTTCTTGGAGG
TTGCATCGCGGGCTGTAGAGCTTCAGTGCCCTCGCCTGGAGTTTAATGTA
CTGGAATGGAATCCTGCACGCAAGTTCTACGAAAGTCTTGGTGCCGTGGA
TTTGACAGATAAAGAGGGCTGGCACTACTACCGCGTGGAGGAGCAACAAC
TGGCCAAATTGGCCGCGGATCTGAGGGCAAAAAAATCTGCAAGCTTTCTA
GACCAT
BO15371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 525 | CG4210-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-RA | 682 | CG4210-RA | 60..581 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15214426..15214744 | 220..538 | 1595 | 100 | Plus |
3R | 32079331 | 3R | 15214288..15214365 | 142..219 | 390 | 100 | Plus |
3R | 32079331 | 3R | 15214033..15214108 | 17..92 | 380 | 100 | Plus |
3R | 32079331 | 3R | 15214170..15214221 | 92..143 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:22:48 has no hits.
BO15371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:07 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:55 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 60..587 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:01 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 60..581 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:07 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 60..587 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:00 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4210-RA | 60..581 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:00 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15214033..15214107 | 17..91 | 100 | -> | Plus |
3R | 15214170..15214221 | 92..143 | 100 | -> | Plus |
3R | 15214290..15214365 | 144..219 | 100 | -> | Plus |
3R | 15214426..15214744 | 220..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:01 Download gff for
BO15371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11039755..11039829 | 17..91 | 100 | -> | Plus |
arm_3R | 11039892..11039943 | 92..143 | 100 | -> | Plus |
arm_3R | 11040012..11040087 | 144..219 | 100 | -> | Plus |
arm_3R | 11040148..11040466 | 220..540 | 99 | | Plus |
BO15371.pep Sequence
Translation from 16 to 556
> BO15371.pep
MSKSGEFTFRRALAEDIKDVLSMIQELADFEKMSNGPQLTEEDLKRDAGL
TGGQEYCEVYVLVDNDTDQAIGYSICYKAYSTWQGRYFFVEDIYVRPEHR
KRGAGKRIFLEVASRAVELQCPRLEFNVLEWNPARKFYESLGAVDLTDKE
GWHYYRVEEQQLAKLAADLRAKKSASFLDH
BO15371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4210-PA | 174 | CG4210-PA | 1..174 | 1..174 | 912 | 100 | Plus |