Clone Sequence Records
BO15372.3prime Sequence
596 bp (595 high quality bases) assembled on 2006-06-16
> BO15372.3prime
ATGGTCTAGAAAGCTTGCGTTGTTTGTTTCCCGCGGTGGGAGAAGATCCT
CCACAAGGCGGTCCATTGCCTGTATCATGCCCATCTCCATACCATTCTCC
AATCCATCGACGGCGGTACGCAAACTTCTTAGAGCTTCTTGGTTCTGGGC
GAACTCCCGTTGTTGCCGGCATAGATTTAGGCGCGGTTTGTGGGTGGTGT
TCAGATGTTCCAGGCACTGCTTCACATCGTTGGAGTCCAGAATGGCGGGA
CGCAGATCACTGCCCAGTTTGGATCGCAAACTAGCGATATCCTTGGCCGC
CTGGTCGACTTGATTCACATCAGATACACGATGGGCATCCACGGCCGCCT
GCAGGGCTCCGCACTTCAGGAGCCTCGCCAGCCGCCCAAAGTCCCGCTGA
TACTCACACTTGGCGTCCAGCCAAATGCGTACTTGCTCCTCCACCTGGCG
CTTTACATTGCGGCTGTCTTCCTGAAAACGGCGCATCGCCTCCAGGTGCA
GCAGGTATTGGATGTCGTCCATGGTGCCCTCAGTTGTCAATGATGGCGGT
GTGGTCGTGGTGGGAGTGGGTGGAGTTTCCATGTCGACTGATAACT
BO15372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4865-PA | 567 | CG4865-RA | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt4-RC | 986 | CG4865-RC | 344..907 | 582..19 | 2820 | 100 | Minus |
| dgt4-RB | 1101 | CG4865-RB | 400..963 | 582..19 | 2820 | 100 | Minus |
| dgt4-RA | 729 | CG4865-RA | 87..650 | 582..19 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4114228..4114791 | 582..19 | 2820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:42:24 has no hits.
BO15372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:18 Download gff for
BO15372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4865-PA | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:51 Download gff for
BO15372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4865-PA | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:18 Download gff for
BO15372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 75..654 | 13..594 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:25 Download gff for
BO15372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 75..654 | 13..594 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:25 Download gff for
BO15372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4114216..4114797 | 14..594 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:18 Download gff for
BO15372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4008249..4008830 | 14..594 | 98 | -> | Minus |
BO15372.5prime Sequence
596 bp (596 high quality bases) assembled on 2006-06-16
> BO15372.5prime
GAAGTTATCAGTCGACATGGAAACTCCACCCACTCCCACCACGACCACAC
CGCCATCATTGACAACTGAGGGCACCATGGACGACATCCAATACCTGCTG
CACCTGGAGGCGATGCGCCGTTTTCAGGAAGACAGCCGCAATGTAAAGCG
CCAGGTGGAGGAGCAAGTACGCATTTGGCTGGACGCCAAGTGTGAGTATC
AGCGGGACTTTGGGCGGCTGGCGAGGCTCCTGAAGTGCGGAGCCCTGCAG
GCGGCCGTGGATGCCCATCGTGTATCTGATGTGAATCAAGTCGACCAGGC
GGCCAAGGATATCGCTAGTTTGCGATCCAAACTGGGCAGTGATCTGCGTC
CCGCCATTCTGGACTCCAACGATGTGAAGCAGTGCCTGGAACATCTGAAC
ACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAACGGGAGTTCGC
CCAGAACCAAGAAGCTCTAAGAAGTTTGCGTACCGCCGTCGATGGATTGG
AGAATGGTATGGAGATGGGCATGATACAGGCAATGGACCGCCTTGTGGAG
GATCTTCTCCCACCGCGGGAAACAAACAACGCAAGCTTTCTAGACC
BO15372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4865-PA | 567 | CG4865-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt4-RC | 986 | CG4865-RC | 344..907 | 17..580 | 2820 | 100 | Plus |
| dgt4-RB | 1101 | CG4865-RB | 400..963 | 17..580 | 2820 | 100 | Plus |
| dgt4-RA | 729 | CG4865-RA | 87..650 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4114228..4114791 | 17..580 | 2820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:45:15 has no hits.
BO15372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:19 Download gff for
BO15372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4865-PA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:53 Download gff for
BO15372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4865-PA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:55 Download gff for
BO15372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 75..654 | 5..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:46 Download gff for
BO15372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 75..654 | 5..586 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:46 Download gff for
BO15372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4114223..4114797 | 11..585 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:55 Download gff for
BO15372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4008256..4008830 | 11..585 | 98 | -> | Plus |
BO15372.complete Sequence
598 bp assembled on 2007-10-17
GenBank Submission: FJ633433
> BO15372.complete
GAAGTTATCAGTCGACATGGAAACTCCACCCACTCCCACCACGACCACAC
CGCCATCATTGACAACTGAGGGCACCATGGACGACATCCAATACCTGCTG
CACCTGGAGGCGATGCGCCGTTTTCAGGAAGACAGCCGCAATGTAAAGCG
CCAGGTGGAGGAGCAAGTACGCATTTGGCTGGACGCCAAGTGTGAGTATC
AGCGGGACTTTGGGCGGCTGGCGAGGCTCCTGAAGTGCGGAGCCCTGCAG
GCGGCCGTGGATGCCCATCGTGTATCTGATGTGAATCAAGTCGACCAGGC
GGCCAAGGATATCGCTAGTTTGCGATCCAAACTGGGCAGTGATCTGCGTC
CCGCCATTCTGGACTCCAACGATGTGAAGCAGTGCCTGGAACATCTGAAC
ACCACCCACAAACCGCGCCTAAATCTATGCCGGCAACAACGGGAGTTCGC
CCAGAACCAAGAAGCTCTAAGAAGTTTGCGTACCGCCGTCGATGGATTGG
AGAATGGTATGGAGATGGGCATGATACAGGCAATGGACCGCCTTGTGGAG
GATCTTCTCCCACCGCGGGAAACAAACAACGCAAGCTTTCTAGACCAT
BO15372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt4-RC | 567 | CG4865-PC | 1..564 | 17..580 | 2820 | 100 | Plus |
| dgt4-RB | 567 | CG4865-PB | 1..564 | 17..580 | 2820 | 100 | Plus |
| dgt4-RA | 567 | CG4865-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt4-RC | 986 | CG4865-RC | 344..907 | 17..580 | 2820 | 100 | Plus |
| dgt4-RB | 1101 | CG4865-RB | 400..963 | 17..580 | 2820 | 100 | Plus |
| dgt4-RA | 729 | CG4865-RA | 87..650 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4114228..4114791 | 17..580 | 2820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:17:23 has no hits.
BO15372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:53 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:21 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 58..637 | 5..586 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:57 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 87..639 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:36 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 70..622 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:49 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt4-RA | 87..639 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:49 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4114228..4114780 | 17..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:57 Download gff for
BO15372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4008261..4008813 | 17..569 | 100 | | Plus |
BO15372.pep Sequence
Translation from 16 to 598
> BO15372.pep
METPPTPTTTTPPSLTTEGTMDDIQYLLHLEAMRRFQEDSRNVKRQVEEQ
VRIWLDAKCEYQRDFGRLARLLKCGALQAAVDAHRVSDVNQVDQAAKDIA
SLRSKLGSDLRPAILDSNDVKQCLEHLNTTHKPRLNLCRQQREFAQNQEA
LRSLRTAVDGLENGMEMGMIQAMDRLVEDLLPPRETNNASFLDH
BO15372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt4-PC | 188 | CG4865-PC | 1..188 | 1..188 | 969 | 100 | Plus |
| dgt4-PB | 188 | CG4865-PB | 1..188 | 1..188 | 969 | 100 | Plus |
| dgt4-PA | 188 | CG4865-PA | 1..188 | 1..188 | 969 | 100 | Plus |
