Clone Sequence Records
BO15374.3prime Sequence
362 bp (361 high quality bases) assembled on 2006-06-16
> BO15374.3prime
ATGGTCTAGAAAGCTTGCCGCCGACTTCAGATCTAAGTCTCTCTCCCTTT
GGGTGCCCTCATAAAGGGCTTGTCGTCTCATCGCCTCACGCAATTGCTGC
TGCTCGAATCTCCTGACGGACCATTGATACCTGCAGGTCATCCAGTAGGC
GATGGTGCCGCAAAAGAAGGAGCCGAAGCCCACGTGGGTGGACAGGTGGG
TTCGCGAGGTGCCCAGAAAAGTCAGCAAGCCGATGCCGATCCCTCCGCTG
ATTCCGTAGAGAAAACTGTTACGAAAGCACGGGATCTGCGCCACATCGCG
TCCGAAGATAACGAAGCTCTTGGCGGGTTCCTCGGGTTCTTCGGCCATGT
CGACTGATAACT
BO15374.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7620-PA | 333 | l(3)87Df-RA | 1..330 | 348..19 | 1600 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 551 | CG7620-RA | 69..399 | 349..19 | 1625 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13031080..13031272 | 320..128 | 935 | 99 | Minus |
3R | 32079331 | 3R | 13031331..13031446 | 134..19 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:34:34 has no hits.
BO15374.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:22 Download gff for
BO15374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 18..348 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:57 Download gff for
BO15374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 18..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:34 Download gff for
BO15374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..403 | 13..349 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:57 Download gff for
BO15374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..403 | 13..349 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:57 Download gff for
BO15374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13031335..13031450 | 13..130 | 97 | | Minus |
3R | 13030981..13031011 | 319..349 | 100 | -> | Minus |
3R | 13031082..13031269 | 131..318 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:34 Download gff for
BO15374.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8856703..8856733 | 319..349 | 100 | -> | Minus |
arm_3R | 8856804..8856991 | 131..318 | 98 | -> | Minus |
arm_3R | 8857057..8857172 | 13..130 | 97 | | Minus |
BO15374.5prime Sequence
362 bp (361 high quality bases) assembled on 2006-06-16
> BO15374.5prime
GAAGTTATCAGTCGACATGGCCGAAGAACCCGAGGAACCCGCCAAGAGCT
TCGTTATCTTCGGACGCGATGTGGCGCAGATCCCGTGCTTTCGTAACAGT
TTTCTCTACGGAATCAGCGGAGGGATCGGCATCGGCTTGCTGACTTTTCT
GGGCACCTCGCGAACCCACCTGTCCACCCACGTGGGCTTCGGCTCCTTCT
TCTGCGGCACCATCGCCTACTGGATGACCTGCAGGTATCAATGGTCCGTC
AGGAGATTCGAGCAGCAGCAATTGCGTGAGGCGATGAGACGACAAGCCCT
TTATGAGGGCACCCAAAGGGAGAGAGACTTAGATCTGAAGTCGGCGGCAA
GCTTTCTAGACC
BO15374.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7620-PA | 333 | l(3)87Df-RA | 1..330 | 17..346 | 1625 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 551 | CG7620-RA | 69..399 | 16..346 | 1640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13031080..13031272 | 45..237 | 950 | 99.5 | Plus |
3R | 32079331 | 3R | 13031331..13031446 | 231..346 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:13:50 has no hits.
BO15374.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:23 Download gff for
BO15374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:58 Download gff for
BO15374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7620-PA | 1..333 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:36 Download gff for
BO15374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..403 | 16..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:05 Download gff for
BO15374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 69..403 | 16..352 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:05 Download gff for
BO15374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13030981..13031011 | 16..46 | 100 | -> | Plus |
3R | 13031082..13031269 | 47..234 | 99 | -> | Plus |
3R | 13031335..13031450 | 235..352 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:36 Download gff for
BO15374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8856703..8856733 | 16..46 | 100 | -> | Plus |
arm_3R | 8856804..8856991 | 47..234 | 99 | -> | Plus |
arm_3R | 8857057..8857172 | 235..352 | 97 | | Plus |
BO15374.complete Sequence
364 bp (364 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633434
> BO15374.complete
GAAGTTATCAGTCGACATGGCCGAAGAACCCGAGGAACCCGCCAAGAGCT
TCGTTATCTTCGGACGCGATGTGGCGCAGATCCCGTGCTTTCGTAACAGT
TTTCTCTACGGAATCAGCGGAGGGATCGGCATCGGCTTGCTGACTTTTCT
GGGCACCTCGCGAACCCACCTGTCCACCCACGTGGGCTTCGGCTCCTTCT
TCTGCGGCACCATCGCCTACTGGATGACCTGCAGGTATCAATGGTCCGTC
AGGAGATTCGAGCAGCAGCAATTGCGTGAGGCGATGAGACGACAAGCCCT
TTATGAGGGCACCCAAAGGGAGAGAGACTTAGATCTGAAGTCGGCGGCAA
GCTTTCTAGACCAT
BO15374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 333 | CG7620-PA | 1..330 | 17..346 | 1635 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-RA | 551 | CG7620-RA | 69..399 | 16..346 | 1640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13031080..13031272 | 45..237 | 950 | 99.5 | Plus |
3R | 32079331 | 3R | 13031331..13031446 | 231..346 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:08 has no hits.
BO15374.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:47 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 1..333 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:51 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 40..374 | 16..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:49 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 70..399 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:47 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 40..374 | 16..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:45 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)87Df-RA | 70..399 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:45 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13030982..13031011 | 17..46 | 100 | -> | Plus |
3R | 13031082..13031269 | 47..234 | 99 | -> | Plus |
3R | 13031335..13031446 | 235..348 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:49 Download gff for
BO15374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8856704..8856733 | 17..46 | 100 | -> | Plus |
arm_3R | 8856804..8856991 | 47..234 | 99 | -> | Plus |
arm_3R | 8857057..8857168 | 235..348 | 98 | | Plus |
BO15374.pep Sequence
Translation from 16 to 364
> BO15374.pep
MAEEPEEPAKSFVIFGRDVAQIPCFRNSFLYGISGGIGIGLLTFLGTSRT
HLSTHVGFGSFFCGTIAYWMTCRYQWSVRRFEQQQLREAMRRQALYEGTQ
RERDLDLKSAASFLDH
BO15374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)87Df-PA | 110 | CG7620-PA | 1..110 | 1..110 | 584 | 100 | Plus |