Clone Sequence Records
BO15375.3prime Sequence
862 bp (802 high quality bases) assembled on 2006-06-16
> BO15375.3prime
ATGGTCTAGAAAGCTTGCTTTTAAATTACAATCGGATGCTAAACGTGCTT
TAGATTCTTTGGGAATGTTGATTGTGCTACTCGTGTAATGGCTGTGAACG
ACATCCTTTGGCGTGGACACATACTGATGGGACATGGCATTGTCCGTGAT
TATTTTGCGCACCACTTCCTCAACCGTTGGCGCCGTCGCCTCCAAGTCCG
CTTGGCTCTTGTTGTCTAGGTTGACGAGAGTCAGTGGCTGATCGGAATGC
ATTACGGAATCCATGCCGCCCTTGGCATTGCAGATGTCCAGTACCCAGGA
CACCACAAAGAAGCAGGCGGCGTTCATCGGAAAAGCCCGGATCAAGGTGG
AGTTTAGACCGCGAAAGAAGTACTGCGGTCCCTCGTTCCTAAAGCCCTTC
ATGGCACAGTCGATGAAGCCATTGTATTTGGCATTCGCGCCCAGGGCATC
GGCCTGCATGTGGGTCTTCACCACGTCGATGGGGTAGCACGCCAACCAGG
ACGACATGCCAGCACATCCGCCGGCCATTAGAGTGTACGCAACGCCGGGT
GTCTCCACTTGACGCATAAGGTACTCGAAGGACACAAAGTAGCTGGCAAA
GCCTGGAATATCCCTTAGAATGGTGGCTGTTAATCCCTTGAAGGCACCTC
TGATACCCTCCGTTTTTACTATGTACTTGAGGCAGTGAATGGGTCCAGTG
AACTTGATGCCGCTATCAACCTGCGTGGACAATTGGAGTCGCGTTTTGGC
CAACTCCATGGGCGCACACACGAAACCCTGAGCGACACCAGCGATGGAGC
CAGCGAAGAAGTGTGACGTCAGCGAATTGGGGTCATTGGACAAGCGTTGC
ACGTTTCCGTTA
BO15375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PA | 1200 | CG4995-RA | 356..1197 | 860..19 | 4185 | 99.8 | Minus |
CG4995-PC | 1083 | CG4995-RC | 239..1080 | 860..19 | 4185 | 99.8 | Minus |
CG4995-PB | 1200 | CG4995-RB | 356..1197 | 860..19 | 4185 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 377..1218 | 860..19 | 4195 | 99.9 | Minus |
CG4995-RB | 1431 | CG4995-RB | 562..1403 | 860..19 | 4195 | 99.9 | Minus |
CG4995-RC | 1205 | CG4995-RC | 336..1177 | 860..19 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10324375..10324962 | 606..19 | 2940 | 100 | Minus |
2L | 23513712 | 2L | 10324052..10324310 | 860..602 | 1280 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:45:03 has no hits.
BO15375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:24 Download gff for
BO15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PC | 238..1083 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:48:59 Download gff for
BO15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 355..1200 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:42:56 Download gff for
BO15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 335..1182 | 14..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:50:40 Download gff for
BO15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 335..1182 | 14..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:50:40 Download gff for
BO15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10324051..10324309 | 603..861 | 99 | -> | Minus |
2L | 10324379..10324967 | 14..602 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:42:56 Download gff for
BO15375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10324051..10324309 | 603..861 | 99 | -> | Minus |
arm_2L | 10324379..10324967 | 14..602 | 99 | | Minus |
BO15375.5prime Sequence
874 bp (815 high quality bases) assembled on 2006-06-16
> BO15375.5prime
GAAGTTATCAGTCGACATGGTTGTGGATTTCGTAGCCGGACTCCTGGGCG
GAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCGATACCGTGAAGGTCCAC
CTGCAAACCGATGATCCTCGCAATCCCAAGTACAAAGGCACATTCCACTG
CTTCCGGACGATAGTGCAAAGAGACAAATTCATAGGATTATATCGTGGTA
TCAGCAGTCCCATGGGAGGAATCGGATTGGTGAACGCCATCGTTTTCGGG
GTCTACGGAAACGTGCAACGCTTGTCCAATGACCCCAATTCGCTGACGTC
ACACTTCTTCGCTGGCTCCATCGCTGGTGTCGCCCAGGGTTTCGTGTGTG
CGCCCATGGAGTTGGCCAAAACGCGACTCCAATTGTCCACGCAGGTTGAT
AGCGGCATCAAGTTCACTGGACCCATTCACTGCCTCAAGTACATAGTAAA
AACGGAGGGTATCAGAGGTGCCTTCAAGGGATTAACAGCCACCATTCTAA
GGGATATTCCAGGCTTTGCCAGCTACTTTGTGTCCTTCGAGTACCTTATG
CGTCAAGTGGAGACACCCGGCGTTGCGTACACTCTAATGGCCGGCGGATG
TGCTGGCATGTCGTCCTGGTTGGCGTGCTACCCCATCGACGTGGTGAAGA
CCCACATGCAGGCCGATGCCCTGGGCGCGAATGCCAAATACAATGGCTTC
ATCGACTGTGCCATGAANGGCTTTAGGAACGAGGGACCGCAGTACTTCTT
TCGCGGTCTAAACTCCACCTTGATCCGGGCTTTTCCGATGAACGCCGCCT
GCTTCTTTGTGGTGTCCTGGGTACTGGACATCTGCAATGCCAAAGGCGGC
ATGGATTCCGTAATGCATTCCGAT
BO15375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PA | 1200 | CG4995-RA | 118..975 | 17..874 | 4246 | 99.7 | Plus |
CG4995-PC | 1083 | CG4995-RC | 1..858 | 17..874 | 4246 | 99.7 | Plus |
CG4995-PB | 1200 | CG4995-RB | 118..975 | 17..874 | 4246 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 139..996 | 17..874 | 4264 | 99.8 | Plus |
CG4995-RB | 1431 | CG4995-RB | 324..1181 | 17..874 | 4264 | 99.8 | Plus |
CG4995-RC | 1205 | CG4995-RC | 98..955 | 17..874 | 4264 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10323847..10324310 | 50..513 | 2320 | 100 | Plus |
2L | 23513712 | 2L | 10324375..10324740 | 509..874 | 1804 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:40:20 has no hits.
BO15375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:25 Download gff for
BO15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PC | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:01 Download gff for
BO15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-PB | 118..975 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:26 Download gff for
BO15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..955 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:23 Download gff for
BO15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..955 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:23 Download gff for
BO15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
2L | 10324379..10324740 | 513..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:26 Download gff for
BO15375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
arm_2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
arm_2L | 10324379..10324740 | 513..874 | 99 | | Plus |
BO15375.complete Sequence
1114 bp (1114 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633435
> BO15375.complete
GAAGTTATCAGTCGACATGGTTGTGGATTTCGTAGCCGGACTCCTGGGCG
GAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCGATACCGTGAAGGTCCAC
CTGCAAACCGATGATCCTCGCAATCCCAAGTACAAAGGCACATTCCACTG
CTTCCGGACGATAGTGCAAAGAGACAAATTCATAGGATTATATCGTGGTA
TCAGCAGTCCCATGGGAGGAATCGGATTGGTGAACGCCATCGTTTTCGGG
GTCTACGGAAACGTGCAACGCTTGTCCAATGACCCCAATTCGCTGACGTC
ACACTTCTTCGCTGGCTCCATCGCTGGTGTCGCCCAGGGTTTCGTGTGTG
CGCCCATGGAGTTGGCCAAAACGCGACTCCAATTGTCCACGCAGGTTGAT
AGCGGCATCAAGTTCACTGGACCCATTCACTGCCTCAAGTACATAGTAAA
AACGGAGGGTATCAGAGGTGCCTTCAAGGGATTAACAGCCACCATTCTAA
GGGATATTCCAGGCTTTGCCAGCTACTTTGTGTCCTTCGAGTACCTTATG
CGTCAAGTGGAGACACCCGGCGTTGCGTACACTCTAATGGCCGGCGGATG
TGCTGGCATGTCGTCCTGGTTGGCGTGCTACCCCATCGACGTGGTGAAGA
CCCACATGCAGGCCGATGCCCTGGGCGCGAATGCCAAATACAATGGCTTC
ATCGACTGTGCCATGAAGGGCTTTAGGAACGAGGGACCGCAGTACTTCTT
TCGCGGTCTAAACTCCACCTTGATCCGGGCTTTTCCGATGAACGCCGCCT
GCTTCTTTGTGGTGTCCTGGGTACTGGACATCTGCAATGCCAAGGGCGGC
ATGGATTCCGTAATGCATTCCGATCAGCCACTGACTCTCGTCAACCTAGA
CAACAAGAGCCAAGCGGACTTGGAGGCGACGGCGCCAACGGTTGAGGAAG
TGGTGCGCAAAATAATCACGGACAATGCCATGTCCCATCAGTATGTGTCC
ACGCCAAAGGATGTCGTTCACAGCCATTACACGAGTAGCACAATCAACAT
TCCCAAAGAATCTAAAGCACGTTTAGCATCCGATTGTAATTTAAAAGCAA
GCTTTCTAGACCAT
BO15375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1083 | CG4995-PD | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG4995-RB | 1200 | CG4995-PB | 118..1197 | 17..1096 | 5400 | 100 | Plus |
CG4995-RC | 1083 | CG4995-PC | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-RD | 1246 | CG4995-RD | 139..1218 | 17..1096 | 5400 | 100 | Plus |
CG4995-RB | 1431 | CG4995-RB | 324..1403 | 17..1096 | 5400 | 100 | Plus |
CG4995-RC | 1205 | CG4995-RC | 98..1177 | 17..1096 | 5400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10324375..10324962 | 509..1096 | 2940 | 100 | Plus |
2L | 23513712 | 2L | 10323847..10324310 | 50..513 | 2320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:48:03 has no hits.
BO15375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:08 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 118..1200 | 17..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:57 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 324..1408 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:08 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..1173 | 17..1092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:08 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RB | 324..1408 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:55 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4995-RC | 98..1173 | 17..1092 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:55 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
2L | 10324379..10324958 | 513..1092 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:08 Download gff for
BO15375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10323746..10323779 | 17..50 | 100 | -> | Plus |
arm_2L | 10323848..10324309 | 51..512 | 100 | -> | Plus |
arm_2L | 10324379..10324958 | 513..1092 | 100 | | Plus |
BO15375.pep Sequence
Translation from 16 to 1114
> BO15375.pep
MVVDFVAGLLGGAAGVLVGHPFDTVKVHLQTDDPRNPKYKGTFHCFRTIV
QRDKFIGLYRGISSPMGGIGLVNAIVFGVYGNVQRLSNDPNSLTSHFFAG
SIAGVAQGFVCAPMELAKTRLQLSTQVDSGIKFTGPIHCLKYIVKTEGIR
GAFKGLTATILRDIPGFASYFVSFEYLMRQVETPGVAYTLMAGGCAGMSS
WLACYPIDVVKTHMQADALGANAKYNGFIDCAMKGFRNEGPQYFFRGLNS
TLIRAFPMNAACFFVVSWVLDICNAKGGMDSVMHSDQPLTLVNLDNKSQA
DLEATAPTVEEVVRKIITDNAMSHQYVSTPKDVVHSHYTSSTINIPKESK
ARLASDCNLKASFLDH
BO15375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4995-PD | 360 | CG4995-PD | 1..360 | 1..360 | 1889 | 100 | Plus |
CG4995-PC | 360 | CG4995-PC | 1..360 | 1..360 | 1889 | 100 | Plus |
CG4995-PB | 399 | CG4995-PB | 40..399 | 1..360 | 1889 | 100 | Plus |
CG4995-PA | 399 | CG4995-PA | 40..399 | 1..360 | 1889 | 100 | Plus |
CG3476-PA | 299 | CG3476-PA | 15..299 | 2..275 | 403 | 37.4 | Plus |