Clone Sequence Records
BO15377.3prime Sequence
689 bp (688 high quality bases) assembled on 2006-06-16
> BO15377.3prime
ATGGTCTAGAAAGCTTGCGTCGAGGAAGCCGGTGTTGACCAGCTTCTCCA
AGAAGAACTTCACATCGCCCAGCTCCGAGTCCTTGATGCCCAGCGACTTC
AGCATGCCCAGATCCCCGTTCTCCACCGCCATGAAAACCGAGCGCAAGTG
TTCCAGGTCCGATCTCATTAGATGAAGGGCAGCTCCAAAATCCTCAATCG
TTTGCGACTCACTCAACGCGATGGCGACCTTCTCGACTCCGCCGAGAGGT
GAAAGGGCATCACGTGCCTTGCTGCCGAAAAGTTTTTCCAGGTAATTGGG
TCCGTGGGAGGCGATCAGGCTCTGGAGGAAGGATGCGGTCTCCTCGACCG
GCGGCCGCTTGGCAGCCGTACATAGACGCATATCCTCATCGTATCCGTCA
GAGCAATCGGGTGCACCATCGCATAAATATTGGATGGAAATGCAATTACC
ATCCCCGGGACACTTGAAGGGCTCATACGGATGACAGGCTTCGCTCCGCT
TCACGATGGGATTGGCCATGTGCCCGTACAAACGACTCAAATCGATGGCC
ATGGTGGTCGTGGTGGTCTGCAGGAGGAGCAGACAGACGGCGAATGATGG
CCACATGCTGAGGTGGTGCTGACGCGGCTGCTGATGATGATGATGATGGT
GGTGGTCCATTGCCAGGAAGGACATGTCGACTGATAACT
BO15377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-PA | 660 | CG31221-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
CG31221-PB | 660 | CG31221-RB | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 4352 | CG31221-RC | 649..1305 | 675..19 | 3285 | 100 | Minus |
CG31221-RB | 1633 | CG31221-RB | 644..1300 | 675..19 | 3285 | 100 | Minus |
CG31221-RA | 4352 | CG31221-RA | 649..1305 | 675..19 | 3285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19454066..19454265 | 363..164 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 19416205..19416388 | 675..492 | 920 | 100 | Minus |
3R | 32079331 | 3R | 19457118..19457264 | 165..19 | 735 | 100 | Minus |
3R | 32079331 | 3R | 19440702..19440831 | 492..363 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:51 has no hits.
BO15377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:26 Download gff for
BO15377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:02 Download gff for
BO15377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:46 Download gff for
BO15377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1305 | 19..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:07 Download gff for
BO15377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1305 | 19..681 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:07 Download gff for
BO15377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19416201..19416388 | 492..681 | 98 | -> | Minus |
3R | 19440703..19440831 | 363..491 | 100 | -> | Minus |
3R | 19454067..19454265 | 164..362 | 100 | -> | Minus |
3R | 19457120..19457264 | 19..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:46 Download gff for
BO15377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15241923..15242110 | 492..681 | 98 | -> | Minus |
arm_3R | 15266425..15266553 | 363..491 | 100 | -> | Minus |
arm_3R | 15279789..15279987 | 164..362 | 100 | -> | Minus |
arm_3R | 15282842..15282986 | 19..163 | 100 | | Minus |
BO15377.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-06-16
> BO15377.5prime
GAAGTTATCAGTCGACATGTCCTTCCTGGCAATGGACCACCACCATCATC
ATCATCATCAGCAGCCGCGTCAGCACCACCTCAGCATGTGGCCATCATTC
GCCGTCTGTCTGCTCCTCCTGCAGACCACCACGACCACCATGGCCATCGA
TTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGCG
AAGCCTGTCATCCGTATGAGCCCTTCAAGTGTCCCGGGGATGGTAATTGC
ATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGATA
CGATGAGGATATGCGTCTATGTACGGCTGCCAAGCGGCCGCCGGTCGAGG
AGACCGCATCCTTCCTCCAGAGCCTGATCGCCTCCCACGGACCCAATTAC
CTGGAAAAACTTTTCGGCAGCAAGGCACGTGATGCCCTTTCACCTCTCGG
CGGAGTCGAGAAGGTCGCCATCGCGTTGAGTGAGTCGCAAACGATTGAGG
ATTTTGGAGCTGCCCTTCATCTAATGAGATCGGACCTGGAACACTTGCGC
TCGGTTTTCATGGCGGTGGAGAACGGGGATCTGGGCATGCTGAAGTCGCT
GGGCATCAAGGACTCGGAGCTGGGCGATGTGAAGTTCTTCTTGGAGAAGC
TGGTCAACACCGGCTTCCTCGACGCAAGCTTTCTAGACC
BO15377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-PA | 660 | CG31221-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
CG31221-PB | 660 | CG31221-RB | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 4352 | CG31221-RC | 649..1305 | 17..673 | 3285 | 100 | Plus |
CG31221-RB | 1633 | CG31221-RB | 644..1300 | 17..673 | 3285 | 100 | Plus |
CG31221-RA | 4352 | CG31221-RA | 649..1305 | 17..673 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19454066..19454265 | 329..528 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 19416205..19416388 | 17..200 | 920 | 100 | Plus |
3R | 32079331 | 3R | 19457118..19457264 | 527..673 | 735 | 100 | Plus |
3R | 32079331 | 3R | 19440702..19440831 | 200..329 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:09:47 has no hits.
BO15377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:28 Download gff for
BO15377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:04 Download gff for
BO15377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-PB | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:20 Download gff for
BO15377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1305 | 11..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:13 Download gff for
BO15377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 645..1305 | 11..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:13 Download gff for
BO15377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19416201..19416388 | 11..200 | 98 | -> | Plus |
3R | 19440703..19440831 | 201..329 | 100 | -> | Plus |
3R | 19454067..19454265 | 330..528 | 100 | -> | Plus |
3R | 19457120..19457264 | 529..673 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:20 Download gff for
BO15377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15241923..15242110 | 11..200 | 98 | -> | Plus |
arm_3R | 15266425..15266553 | 201..329 | 100 | -> | Plus |
arm_3R | 15279789..15279987 | 330..528 | 100 | -> | Plus |
arm_3R | 15282842..15282986 | 529..673 | 100 | | Plus |
BO15377.complete Sequence
691 bp (691 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633436
> BO15377.complete
GAAGTTATCAGTCGACATGTCCTTCCTGGCAATGGACCACCACCATCATC
ATCATCATCAGCAGCCGCGTCAGCACCACCTCAGCATGTGGCCATCATTC
GCCGTCTGTCTGCTCCTCCTGCAGACCACCACGACCACCATGGCCATCGA
TTTGAGTCGTTTGTACGGGCACATGGCCAATCCCATCGTGAAGCGGAGCG
AAGCCTGTCATCCGTATGAGCCCTTCAAGTGTCCCGGGGATGGTAATTGC
ATTTCCATCCAATATTTATGCGATGGTGCACCCGATTGCTCTGACGGATA
CGATGAGGATATGCGTCTATGTACGGCTGCCAAGCGGCCGCCGGTCGAGG
AGACCGCATCCTTCCTCCAGAGCCTGATCGCCTCCCACGGACCCAATTAC
CTGGAAAAACTTTTCGGCAGCAAGGCACGTGATGCCCTTTCACCTCTCGG
CGGAGTCGAGAAGGTCGCCATCGCGTTGAGTGAGTCGCAAACGATTGAGG
ATTTTGGAGCTGCCCTTCATCTAATGAGATCGGACCTGGAACACTTGCGC
TCGGTTTTCATGGCGGTGGAGAACGGGGATCTGGGCATGCTGAAGTCGCT
GGGCATCAAGGACTCGGAGCTGGGCGATGTGAAGTTCTTCTTGGAGAAGC
TGGTCAACACCGGCTTCCTCGACGCAAGCTTTCTAGACCAT
BO15377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 765 | CG31221-PC | 1..657 | 17..673 | 3285 | 100 | Plus |
CG31221-RB | 660 | CG31221-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG31221-RA | 660 | CG31221-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-RC | 4352 | CG31221-RC | 649..1305 | 17..673 | 3285 | 100 | Plus |
CG31221-RB | 1633 | CG31221-RB | 644..1300 | 17..673 | 3285 | 100 | Plus |
CG31221-RA | 4352 | CG31221-RA | 649..1305 | 17..673 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19454066..19454265 | 329..528 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 19416205..19416388 | 17..200 | 920 | 100 | Plus |
3R | 32079331 | 3R | 19457118..19457264 | 527..673 | 735 | 100 | Plus |
3R | 32079331 | 3R | 19440702..19440831 | 200..329 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:05 has no hits.
BO15377.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:09 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RB | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:59 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RB | 639..1295 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:04 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 649..1305 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:09 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RB | 635..1295 | 11..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:44 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31221-RA | 649..1305 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:44 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19416205..19416388 | 17..200 | 100 | -> | Plus |
3R | 19440703..19440831 | 201..329 | 100 | -> | Plus |
3R | 19454067..19454265 | 330..528 | 100 | -> | Plus |
3R | 19457120..19457264 | 529..675 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:04 Download gff for
BO15377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15241927..15242110 | 17..200 | 100 | -> | Plus |
arm_3R | 15266425..15266553 | 201..329 | 100 | -> | Plus |
arm_3R | 15279789..15279987 | 330..528 | 100 | -> | Plus |
arm_3R | 15282842..15282986 | 529..675 | 98 | | Plus |
BO15377.pep Sequence
Translation from 16 to 691
> BO15377.pep
MSFLAMDHHHHHHHQQPRQHHLSMWPSFAVCLLLLQTTTTTMAIDLSRLY
GHMANPIVKRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMR
LCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKV
AIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDS
ELGDVKFFLEKLVNTGFLDASFLDH
BO15377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31221-PB | 219 | CG31221-PB | 1..219 | 1..219 | 1168 | 100 | Plus |
CG31221-PA | 219 | CG31221-PA | 1..219 | 1..219 | 1168 | 100 | Plus |
CG31221-PC | 254 | CG31221-PC | 1..219 | 1..219 | 1168 | 100 | Plus |