Clone Sequence Records
BO15378.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-06-16
> BO15378.3prime
ATGGTCTAGAAAGCTTGCTTCCACCTCCTCCTGACTACGGCGGACGCACC
TGGTGACCTTGCGCTTGAATTCCGCATAATTCTCCCGGTACTCCTTGGCC
GCATCCACATTGGCGGCCGACTCGTCATTGGGATCGGTGAGCATGGAGAT
AACGGAAAGAAGGATCGTCTCCACGGTGTGGACCGGTAGCCAGCGCTCCT
CGGCCTTCTCGTAGCCCCACTTATCGTCACCAGGTTCGTGGAGGATCGAG
ATGCAAACGTCGCCGGCCTTGTCAATATTGGGATGCCAGATTTCGGTGAT
GAACTTCATCTTGGGCGGGCGCAGTGGGTACTCTTTGGGGAAGATCAGGT
GAGCCTTGAAGAAGCCGCCCTCGTATAGCGTATCTGGGGGACCGATGATC
ACCACCTCCCATTTGAAGATGTCGGAGTCGCTGACCAGACCGGCGGAGAA
GCCCTCGACGGGATGGCGTTGTAATTCGGAGAGCTGGCGATTGAGCAGTA
GCGATGCTTGCAGTTCGGACATGTCGACTGATAACT
BO15378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9602-PA | 507 | CG9602-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 660 | CG9602-RA | 72..578 | 525..19 | 2535 | 100 | Minus |
CG40045-RB | 868 | CG40045-RB | 427..722 | 387..92 | 310 | 74.1 | Minus |
CG40045-RA | 740 | CG40045-RA | 299..594 | 387..92 | 310 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13717536..13718042 | 19..525 | 2535 | 100 | Plus |
3L | 28110227 | 3L | 24035432..24035713 | 373..92 | 270 | 73 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:38:22 has no hits.
BO15378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:29 Download gff for
BO15378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:05 Download gff for
BO15378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:44 Download gff for
BO15378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 59..578 | 19..536 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:52 Download gff for
BO15378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc87F-RA | 59..578 | 19..536 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:52 Download gff for
BO15378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13717536..13718050 | 19..536 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:44 Download gff for
BO15378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9543258..9543772 | 19..536 | 99 | | Plus |
BO15378.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-06-16
> BO15378.5prime
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAAGCAAGCTTTCTAGACC
BO15378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9602-PA | 507 | CG9602-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 660 | CG9602-RA | 72..578 | 14..520 | 2535 | 100 | Plus |
CG40045-RB | 868 | CG40045-RB | 427..722 | 152..447 | 310 | 74.1 | Plus |
CG40045-RA | 740 | CG40045-RA | 299..594 | 152..447 | 310 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13717536..13718042 | 520..14 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 24035432..24035713 | 166..447 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:46:34 has no hits.
BO15378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:30 Download gff for
BO15378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:06 Download gff for
BO15378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:29 Download gff for
BO15378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 58..578 | 2..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:27 Download gff for
BO15378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc87F-RA | 58..578 | 2..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:27 Download gff for
BO15378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13717536..13718051 | 1..520 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:29 Download gff for
BO15378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9543258..9543773 | 1..520 | 99 | | Minus |
BO15378.complete Sequence
538 bp (538 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633437
> BO15378.complete
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAAGCAAGCTTTCTAGACCAT
BO15378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 507 | CG9602-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG40045-RA | 507 | CG40045-PA | 136..431 | 152..447 | 310 | 73.6 | Plus |
CG40045-RD | 504 | CG40045-PD | 147..428 | 166..447 | 270 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-RA | 660 | CG9602-RA | 72..578 | 14..520 | 2535 | 100 | Plus |
CG40045-RB | 868 | CG40045-RB | 427..722 | 152..447 | 310 | 73.6 | Plus |
CG40045-RA | 740 | CG40045-RA | 299..594 | 152..447 | 310 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13717536..13718042 | 520..14 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 24035432..24035713 | 166..447 | 270 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:21:52 has no hits.
BO15378.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:10 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:00 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 48..568 | 2..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:18 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 75..578 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:10 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9602-RA | 48..568 | 2..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:51 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc87F-RA | 75..578 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:51 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13717534..13718039 | 17..522 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:18 Download gff for
BO15378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9543256..9543761 | 17..522 | 99 | | Minus |
BO15378.pep Sequence
Translation from 16 to 538
> BO15378.pep
MSELQASLLLNRQLSELQRHPVEGFSAGLVSDSDIFKWEVVIIGPPDTLY
EGGFFKAHLIFPKEYPLRPPKMKFITEIWHPNIDKAGDVCISILHEPGDD
KWGYEKAEERWLPVHTVETILLSVISMLTDPNDESAANVDAAKEYRENYA
EFKRKVTRCVRRSQEEVEASFLDH
BO15378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc87F-PA | 168 | CG9602-PA | 1..168 | 1..168 | 890 | 100 | Plus |
CG40045-PA | 168 | CG40045-PA | 1..166 | 1..166 | 772 | 83.1 | Plus |
CG40045-PD | 167 | CG40045-PD | 1..165 | 1..166 | 753 | 82.5 | Plus |
CG40045-PC | 132 | CG40045-PC | 15..130 | 51..166 | 567 | 87.1 | Plus |
CG40045-PB | 97 | CG40045-PB | 1..95 | 72..166 | 456 | 86.3 | Plus |