Clone BO15378 Report

Search the DGRC for BO15378

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG9602-RA
Protein status:BO15378.pep: validated full length
Sequenced Size:538

Clone Sequence Records

BO15378.3prime Sequence

536 bp (535 high quality bases) assembled on 2006-06-16

> BO15378.3prime
ATGGTCTAGAAAGCTTGCTTCCACCTCCTCCTGACTACGGCGGACGCACC
TGGTGACCTTGCGCTTGAATTCCGCATAATTCTCCCGGTACTCCTTGGCC
GCATCCACATTGGCGGCCGACTCGTCATTGGGATCGGTGAGCATGGAGAT
AACGGAAAGAAGGATCGTCTCCACGGTGTGGACCGGTAGCCAGCGCTCCT
CGGCCTTCTCGTAGCCCCACTTATCGTCACCAGGTTCGTGGAGGATCGAG
ATGCAAACGTCGCCGGCCTTGTCAATATTGGGATGCCAGATTTCGGTGAT
GAACTTCATCTTGGGCGGGCGCAGTGGGTACTCTTTGGGGAAGATCAGGT
GAGCCTTGAAGAAGCCGCCCTCGTATAGCGTATCTGGGGGACCGATGATC
ACCACCTCCCATTTGAAGATGTCGGAGTCGCTGACCAGACCGGCGGAGAA
GCCCTCGACGGGATGGCGTTGTAATTCGGAGAGCTGGCGATTGAGCAGTA
GCGATGCTTGCAGTTCGGACATGTCGACTGATAACT

BO15378.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9602-PA 507 CG9602-RA 1..504 522..19 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 660 CG9602-RA 72..578 525..19 2535 100 Minus
CG40045-RB 868 CG40045-RB 427..722 387..92 310 74.1 Minus
CG40045-RA 740 CG40045-RA 299..594 387..92 310 74.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13717536..13718042 19..525 2535 100 Plus
3L 28110227 3L 24035432..24035713 373..92 270 73 Minus
Blast to na_te.dros performed on 2015-02-10 22:38:22 has no hits.

BO15378.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:29 Download gff for BO15378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 18..522 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:05 Download gff for BO15378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 18..522 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:44 Download gff for BO15378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 59..578 19..536 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:52 Download gff for BO15378.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc87F-RA 59..578 19..536 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:52 Download gff for BO15378.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13717536..13718050 19..536 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:44 Download gff for BO15378.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9543258..9543772 19..536 99   Plus

BO15378.5prime Sequence

536 bp (535 high quality bases) assembled on 2006-06-16

> BO15378.5prime
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAAGCAAGCTTTCTAGACC

BO15378.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9602-PA 507 CG9602-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 660 CG9602-RA 72..578 14..520 2535 100 Plus
CG40045-RB 868 CG40045-RB 427..722 152..447 310 74.1 Plus
CG40045-RA 740 CG40045-RA 299..594 152..447 310 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13717536..13718042 520..14 2535 100 Minus
3L 28110227 3L 24035432..24035713 166..447 270 73 Plus
Blast to na_te.dros performed on 2015-02-12 19:46:34 has no hits.

BO15378.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:30 Download gff for BO15378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:06 Download gff for BO15378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:29 Download gff for BO15378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 58..578 2..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:27 Download gff for BO15378.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc87F-RA 58..578 2..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:27 Download gff for BO15378.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13717536..13718051 1..520 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:29 Download gff for BO15378.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9543258..9543773 1..520 99   Minus

BO15378.complete Sequence

538 bp (538 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633437

> BO15378.complete
GAAGTTATCAGTCGACATGTCCGAACTGCAAGCATCGCTACTGCTCAATC
GCCAGCTCTCCGAATTACAACGCCATCCCGTCGAGGGCTTCTCCGCCGGT
CTGGTCAGCGACTCCGACATCTTCAAATGGGAGGTGGTGATCATCGGTCC
CCCAGATACGCTATACGAGGGCGGCTTCTTCAAGGCTCACCTGATCTTCC
CCAAAGAGTACCCACTGCGCCCGCCCAAGATGAAGTTCATCACCGAAATC
TGGCATCCCAATATTGACAAGGCCGGCGACGTTTGCATCTCGATCCTCCA
CGAACCTGGTGACGATAAGTGGGGCTACGAGAAGGCCGAGGAGCGCTGGC
TACCGGTCCACACCGTGGAGACGATCCTTCTTTCCGTTATCTCCATGCTC
ACCGATCCCAATGACGAGTCGGCCGCCAATGTGGATGCGGCCAAGGAGTA
CCGGGAGAATTATGCGGAATTCAAGCGCAAGGTCACCAGGTGCGTCCGCC
GTAGTCAGGAGGAGGTGGAAGCAAGCTTTCTAGACCAT

BO15378.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 507 CG9602-PA 1..504 17..520 2520 100 Plus
CG40045-RA 507 CG40045-PA 136..431 152..447 310 73.6 Plus
CG40045-RD 504 CG40045-PD 147..428 166..447 270 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-RA 660 CG9602-RA 72..578 14..520 2535 100 Plus
CG40045-RB 868 CG40045-RB 427..722 152..447 310 73.6 Plus
CG40045-RA 740 CG40045-RA 299..594 152..447 310 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13717536..13718042 520..14 2535 100 Minus
3L 28110227 3L 24035432..24035713 166..447 270 73 Plus
Blast to na_te.dros performed on 2014-11-27 16:21:52 has no hits.

BO15378.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:10 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 1..507 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:00 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 48..568 2..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:18 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 75..578 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:10 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
CG9602-RA 48..568 2..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:51 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc87F-RA 75..578 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:51 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13717534..13718039 17..522 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:18 Download gff for BO15378.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9543256..9543761 17..522 99   Minus

BO15378.pep Sequence

Translation from 16 to 538

> BO15378.pep
MSELQASLLLNRQLSELQRHPVEGFSAGLVSDSDIFKWEVVIIGPPDTLY
EGGFFKAHLIFPKEYPLRPPKMKFITEIWHPNIDKAGDVCISILHEPGDD
KWGYEKAEERWLPVHTVETILLSVISMLTDPNDESAANVDAAKEYRENYA
EFKRKVTRCVRRSQEEVEASFLDH

BO15378.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc87F-PA 168 CG9602-PA 1..168 1..168 890 100 Plus
CG40045-PA 168 CG40045-PA 1..166 1..166 772 83.1 Plus
CG40045-PD 167 CG40045-PD 1..165 1..166 753 82.5 Plus
CG40045-PC 132 CG40045-PC 15..130 51..166 567 87.1 Plus
CG40045-PB 97 CG40045-PB 1..95 72..166 456 86.3 Plus