Clone Sequence Records
BO15379.3prime Sequence
880 bp (765 high quality bases) assembled on 2006-06-16
> BO15379.3prime
ATGGTCTAGAAAGCTTGCGTAGGCAAAACGGGTGTCCGGATGGTAGCCAA
GCTTGTCCAGCGCCGGATTGCAGGCAAAGTTAATCATTGGTGGTGGGCCG
CAAAGCAACACAATGGTATCGTCCTTGGCCGGAAGCAGGTGGGCGGCGAT
CATTTCCTCATTGATGAAGCCAACGCTATACTGCCAACCTTCGTTTGCCT
TGTCGACTGTGTACCAGATCTTGAACTGGTCAGGATGCTTCTGGGCCAGT
TCGTCCAACTCTGCACGCAGTAGAATGTCCTTTTCGCTCTGATTGGCGAA
CAGCAACGCCAGTTCAGTCTTATCCTTATCGCTGCGCTTGAGAACTTCCC
TGGCCAATTGAAGCATTGGAGTAATGCCAGTGCCGCCGGCAATCATGTTG
ACCCGCTTGGCGGTCACGTGCTTTGGAGGATCCTTGCGCAACTTTTTGAT
GGAGAAGGTGCCATTGCCGAGATATTGTAGCCTACCCGAGGGACCACGGA
ACGAGATCTTGTCCCCCAACTCGAGCTGCTCCAGGTGTTGTGTCATTTTG
CCGCCGGCCGGGAACTTGGGATGCGAATCCTTGAAGTACACCTTGACGAC
TAGGTCCACGTAGCCCACATCCTCATCAGACGATATAGGAGTGTATGGCC
GAATTATTAGCTCATTGTCGATGGTGGCGATCAGATGAATGTGCTGGCCA
ACGGGCAGGCCAAGGACATGCTGCTTGGAGGGCAATCCAAACCGGAATCT
CCTAGTGTCATGGCTCAGATTCTCCTTTTCAATGAGAGGCAGCAGGTACT
TGTCATTGGGATCCACAAGTGTGCGCAGCCGAGCGGTGCGATTGGGTTCC
CGGCGTGGTTTCGTGGACTTTCTATTCAGC
BO15379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PB | 951 | CG5946-RB | 97..948 | 870..19 | 4210 | 99.7 | Minus |
CG5946-PA | 942 | CG5946-RA | 88..939 | 870..19 | 4210 | 99.7 | Minus |
CG5946-PC | 942 | CG5946-RC | 88..769 | 870..189 | 3360 | 99.7 | Minus |
CG5946-PD | 951 | CG5946-RD | 97..778 | 870..189 | 3360 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RF | 1460 | CG5946-RF | 435..1296 | 880..19 | 4250 | 99.5 | Minus |
CG5946-RA | 1224 | CG5946-RA | 199..1060 | 880..19 | 4250 | 99.5 | Minus |
CG5946-RB | 1686 | CG5946-RB | 373..1234 | 880..19 | 4250 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818845 | 289..880 | 2900 | 99.3 | Plus |
3L | 28110227 | 3L | 11817147..11817318 | 19..190 | 860 | 100 | Plus |
3L | 28110227 | 3L | 11818086..11818189 | 187..290 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:09:21 has no hits.
BO15379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:31 Download gff for
BO15379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 78..942 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:08 Download gff for
BO15379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 78..942 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:44 Download gff for
BO15379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 373..1237 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:42:04 Download gff for
BO15379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RB | 373..1237 | 15..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:42:04 Download gff for
BO15379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817144..11817316 | 15..188 | 98 | <- | Plus |
3L | 11818088..11818187 | 189..288 | 100 | <- | Plus |
3L | 11818254..11818845 | 289..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:44 Download gff for
BO15379.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810244..11810416 | 15..188 | 98 | <- | Plus |
arm_3L | 11811188..11811287 | 189..288 | 100 | <- | Plus |
arm_3L | 11811354..11811945 | 289..880 | 99 | | Plus |
BO15379.5prime Sequence
918 bp (781 high quality bases) assembled on 2006-06-16
> BO15379.5prime
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGANGAAATGATCGCCGCCCACCTGCTTCCGGCCAAG
GACGATACCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGC
CTGCAATCCGGCGCTGGA
BO15379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PA | 942 | CG5946-RA | 1..902 | 17..918 | 4466 | 99.7 | Plus |
CG5946-PB | 951 | CG5946-RB | 23..911 | 30..918 | 4401 | 99.7 | Plus |
CG5946-PC | 942 | CG5946-RC | 1..769 | 17..785 | 3820 | 99.8 | Plus |
CG5946-PD | 951 | CG5946-RD | 23..778 | 30..785 | 3755 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RA | 1224 | CG5946-RA | 122..1023 | 17..918 | 4484 | 99.8 | Plus |
CG5946-RF | 1460 | CG5946-RF | 371..1259 | 30..918 | 4419 | 99.8 | Plus |
CG5946-RB | 1686 | CG5946-RB | 309..1197 | 30..918 | 4419 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818907 | 685..32 | 3255 | 99.8 | Minus |
3L | 28110227 | 3L | 11817184..11817318 | 918..784 | 664 | 99.3 | Minus |
3L | 28110227 | 3L | 11818086..11818189 | 787..684 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:47:43 has no hits.
BO15379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:32 Download gff for
BO15379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:09 Download gff for
BO15379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:03 Download gff for
BO15379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..1022 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:02 Download gff for
BO15379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..1022 | 17..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:02 Download gff for
BO15379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817185..11817316 | 786..917 | 99 | <- | Minus |
3L | 11818088..11818187 | 686..785 | 100 | <- | Minus |
3L | 11818254..11818907 | 32..685 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:03 Download gff for
BO15379.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810285..11810416 | 786..917 | 99 | <- | Minus |
arm_3L | 11811188..11811287 | 686..785 | 100 | <- | Minus |
arm_3L | 11811354..11812007 | 32..685 | 99 | <- | Minus |
BO15379.complete Sequence
973 bp assembled on 2007-10-17
GenBank Submission: FJ633438
> BO15379.complete
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCGGCCAAG
GACGATACCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGC
CTGCAATCCGGCGCTGGACAAGCTTGGCTACCATCCGGACACCCGTTTTG
CCTACGCAAGCTTTCTAGACCAT
BO15379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RA | 942 | CG5946-PA | 1..939 | 17..955 | 4680 | 99.9 | Plus |
CG5946-RF | 951 | CG5946-PF | 23..948 | 30..955 | 4615 | 99.9 | Plus |
CG5946-RB | 951 | CG5946-PB | 23..948 | 30..955 | 4615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-RA | 1224 | CG5946-RA | 122..1060 | 17..955 | 4680 | 99.9 | Plus |
CG5946-RF | 1460 | CG5946-RF | 371..1296 | 30..955 | 4615 | 99.9 | Plus |
CG5946-RB | 1686 | CG5946-RB | 309..1234 | 30..955 | 4615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11818254..11818907 | 685..32 | 3255 | 99.8 | Minus |
3L | 28110227 | 3L | 11817147..11817318 | 955..784 | 860 | 100 | Minus |
3L | 28110227 | 3L | 11818086..11818189 | 787..684 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:52 has no hits.
BO15379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:54 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:23 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 115..1056 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:51 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..1060 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:03 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 115..1053 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:05 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5946-RA | 122..1060 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:05 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11817145..11817316 | 786..957 | 98 | <- | Minus |
3L | 11818088..11818187 | 686..785 | 100 | <- | Minus |
3L | 11818254..11818907 | 32..685 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:51 Download gff for
BO15379.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11810245..11810416 | 786..957 | 98 | <- | Minus |
arm_3L | 11811188..11811287 | 686..785 | 100 | <- | Minus |
arm_3L | 11811354..11812007 | 32..685 | 99 | <- | Minus |
BO15379.pep Sequence
Translation from 16 to 973
> BO15379.pep
MTEFDFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTLVDP
NDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATIDNEL
IIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLELGDK
ISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITPMLQ
LAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKIWYT
VDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACNPAL
DKLGYHPDTRFAYASFLDH
BO15379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5946-PA | 313 | CG5946-PA | 1..313 | 1..313 | 1638 | 100 | Plus |
CG5946-PF | 316 | CG5946-PF | 4..316 | 1..313 | 1616 | 98.7 | Plus |
CG5946-PB | 316 | CG5946-PB | 4..316 | 1..313 | 1616 | 98.7 | Plus |
CG5946-PC | 313 | CG5946-PC | 1..313 | 1..313 | 1503 | 90.4 | Plus |
CG5946-PD | 316 | CG5946-PD | 4..316 | 1..313 | 1481 | 89.1 | Plus |