Clone BO15379 Report

Search the DGRC for BO15379

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG5946-RA
Protein status:BO15379.pep: validated full length
Sequenced Size:973

Clone Sequence Records

BO15379.3prime Sequence

880 bp (765 high quality bases) assembled on 2006-06-16

> BO15379.3prime
ATGGTCTAGAAAGCTTGCGTAGGCAAAACGGGTGTCCGGATGGTAGCCAA
GCTTGTCCAGCGCCGGATTGCAGGCAAAGTTAATCATTGGTGGTGGGCCG
CAAAGCAACACAATGGTATCGTCCTTGGCCGGAAGCAGGTGGGCGGCGAT
CATTTCCTCATTGATGAAGCCAACGCTATACTGCCAACCTTCGTTTGCCT
TGTCGACTGTGTACCAGATCTTGAACTGGTCAGGATGCTTCTGGGCCAGT
TCGTCCAACTCTGCACGCAGTAGAATGTCCTTTTCGCTCTGATTGGCGAA
CAGCAACGCCAGTTCAGTCTTATCCTTATCGCTGCGCTTGAGAACTTCCC
TGGCCAATTGAAGCATTGGAGTAATGCCAGTGCCGCCGGCAATCATGTTG
ACCCGCTTGGCGGTCACGTGCTTTGGAGGATCCTTGCGCAACTTTTTGAT
GGAGAAGGTGCCATTGCCGAGATATTGTAGCCTACCCGAGGGACCACGGA
ACGAGATCTTGTCCCCCAACTCGAGCTGCTCCAGGTGTTGTGTCATTTTG
CCGCCGGCCGGGAACTTGGGATGCGAATCCTTGAAGTACACCTTGACGAC
TAGGTCCACGTAGCCCACATCCTCATCAGACGATATAGGAGTGTATGGCC
GAATTATTAGCTCATTGTCGATGGTGGCGATCAGATGAATGTGCTGGCCA
ACGGGCAGGCCAAGGACATGCTGCTTGGAGGGCAATCCAAACCGGAATCT
CCTAGTGTCATGGCTCAGATTCTCCTTTTCAATGAGAGGCAGCAGGTACT
TGTCATTGGGATCCACAAGTGTGCGCAGCCGAGCGGTGCGATTGGGTTCC
CGGCGTGGTTTCGTGGACTTTCTATTCAGC

BO15379.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PB 951 CG5946-RB 97..948 870..19 4210 99.7 Minus
CG5946-PA 942 CG5946-RA 88..939 870..19 4210 99.7 Minus
CG5946-PC 942 CG5946-RC 88..769 870..189 3360 99.7 Minus
CG5946-PD 951 CG5946-RD 97..778 870..189 3360 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RF 1460 CG5946-RF 435..1296 880..19 4250 99.5 Minus
CG5946-RA 1224 CG5946-RA 199..1060 880..19 4250 99.5 Minus
CG5946-RB 1686 CG5946-RB 373..1234 880..19 4250 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818845 289..880 2900 99.3 Plus
3L 28110227 3L 11817147..11817318 19..190 860 100 Plus
3L 28110227 3L 11818086..11818189 187..290 520 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:09:21 has no hits.

BO15379.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:31 Download gff for BO15379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 78..942 15..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:08 Download gff for BO15379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 78..942 15..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:44 Download gff for BO15379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RB 373..1237 15..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:42:04 Download gff for BO15379.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RB 373..1237 15..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:42:04 Download gff for BO15379.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11817144..11817316 15..188 98 <- Plus
3L 11818088..11818187 189..288 100 <- Plus
3L 11818254..11818845 289..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:44 Download gff for BO15379.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810244..11810416 15..188 98 <- Plus
arm_3L 11811188..11811287 189..288 100 <- Plus
arm_3L 11811354..11811945 289..880 99   Plus

BO15379.5prime Sequence

918 bp (781 high quality bases) assembled on 2006-06-16

> BO15379.5prime
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGANGAAATGATCGCCGCCCACCTGCTTCCGGCCAAG
GACGATACCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGC
CTGCAATCCGGCGCTGGA

BO15379.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PA 942 CG5946-RA 1..902 17..918 4466 99.7 Plus
CG5946-PB 951 CG5946-RB 23..911 30..918 4401 99.7 Plus
CG5946-PC 942 CG5946-RC 1..769 17..785 3820 99.8 Plus
CG5946-PD 951 CG5946-RD 23..778 30..785 3755 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 1224 CG5946-RA 122..1023 17..918 4484 99.8 Plus
CG5946-RF 1460 CG5946-RF 371..1259 30..918 4419 99.8 Plus
CG5946-RB 1686 CG5946-RB 309..1197 30..918 4419 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818907 685..32 3255 99.8 Minus
3L 28110227 3L 11817184..11817318 918..784 664 99.3 Minus
3L 28110227 3L 11818086..11818189 787..684 520 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:47:43 has no hits.

BO15379.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:32 Download gff for BO15379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 1..901 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:09 Download gff for BO15379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-PA 1..901 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:03 Download gff for BO15379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..1022 17..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:02 Download gff for BO15379.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..1022 17..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:02 Download gff for BO15379.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11817185..11817316 786..917 99 <- Minus
3L 11818088..11818187 686..785 100 <- Minus
3L 11818254..11818907 32..685 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:03 Download gff for BO15379.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810285..11810416 786..917 99 <- Minus
arm_3L 11811188..11811287 686..785 100 <- Minus
arm_3L 11811354..11812007 32..685 99 <- Minus

BO15379.complete Sequence

973 bp assembled on 2007-10-17

GenBank Submission: FJ633438

> BO15379.complete
GAAGTTATCAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGG
GTGTGGTAGCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAAT
AAGAAGTCCACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCG
CACACTTGTGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGG
AGAATCTGAGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAG
CAGCATGTCCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCAC
CATCGACAATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATG
AGGATGTGGGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCG
CATCCCAAGTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCT
CGAGTTGGGGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAAT
ATCTCGGCAATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCA
AAGCACGTGACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCAT
TACTCCAATGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGG
ATAAGACTGAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATT
CTACTGCGTGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTT
CAAGATCTGGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCG
TTGGCTTCATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCGGCCAAG
GACGATACCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGC
CTGCAATCCGGCGCTGGACAAGCTTGGCTACCATCCGGACACCCGTTTTG
CCTACGCAAGCTTTCTAGACCAT

BO15379.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 942 CG5946-PA 1..939 17..955 4680 99.9 Plus
CG5946-RF 951 CG5946-PF 23..948 30..955 4615 99.9 Plus
CG5946-RB 951 CG5946-PB 23..948 30..955 4615 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 1224 CG5946-RA 122..1060 17..955 4680 99.9 Plus
CG5946-RF 1460 CG5946-RF 371..1296 30..955 4615 99.9 Plus
CG5946-RB 1686 CG5946-RB 309..1234 30..955 4615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818907 685..32 3255 99.8 Minus
3L 28110227 3L 11817147..11817318 955..784 860 100 Minus
3L 28110227 3L 11818086..11818189 787..684 520 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:40:52 has no hits.

BO15379.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:54 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 1..942 17..959 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:23 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 115..1056 17..959 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:51 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..1060 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:03 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 115..1053 17..957 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:05 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 122..1060 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:05 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11817145..11817316 786..957 98 <- Minus
3L 11818088..11818187 686..785 100 <- Minus
3L 11818254..11818907 32..685 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:51 Download gff for BO15379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810245..11810416 786..957 98 <- Minus
arm_3L 11811188..11811287 686..785 100 <- Minus
arm_3L 11811354..11812007 32..685 99 <- Minus

BO15379.pep Sequence

Translation from 16 to 973

> BO15379.pep
MTEFDFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTLVDP
NDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATIDNEL
IIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLELGDK
ISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITPMLQ
LAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKIWYT
VDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACNPAL
DKLGYHPDTRFAYASFLDH

BO15379.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PA 313 CG5946-PA 1..313 1..313 1638 100 Plus
CG5946-PF 316 CG5946-PF 4..316 1..313 1616 98.7 Plus
CG5946-PB 316 CG5946-PB 4..316 1..313 1616 98.7 Plus
CG5946-PC 313 CG5946-PC 1..313 1..313 1503 90.4 Plus
CG5946-PD 316 CG5946-PD 4..316 1..313 1481 89.1 Plus