Clone Sequence Records
BO15381.3prime Sequence
533 bp (532 high quality bases) assembled on 2006-06-16
> BO15381.3prime
ATGGTCTAGAAAGCTTGCAGCTTTCAGCGGCGACTCGTTGAATCCGCGAG
CCGCGTAATCGGAAGGCGCCGATCGATCGGAGACCTTGGGATAGCCCTCA
TCTCCGGGCACGCACTGCTTGCGCGAGTGGATCACACGCCAGCCGCCCTT
CCGGGTCCAGTCATTCTGATTGTACTTGAAGTAGTAGGCGCCGGCGTAGA
TTCCGGTTAGGGCGAGCAGAGCCTTTCCGGTCCAGAAGCGCACGGTGTAC
GCGCGCTGAAAGCCCAGGACGGGTTCCAAAACATTGCAGACCTTGTCGAG
GGGAGCGCGGTAGAAGCGCTTGATGGGGTTGTTCAGCTCCAGCTCCAGGG
CGGGCACCTTGCGGGGTCCATGGTGCAGCTCCTGGTCCTTCAGCCACTGT
TTGCGCCAGGCGCGCTCCTCCGGCGACATGCCGATCAGGCGCTCCCGCTC
CCGCACCATGCGGCCCGCAATTACCATCGGCTTCACGCCGCCCGTTTCCG
AGGCACCACCAGCTACCATGTCGACTGATAACT
BO15381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13240-PA | 504 | l(2)35Di-RA | 1..501 | 519..19 | 2430 | 99.4 | Minus |
CG13240-PB | 417 | l(2)35Di-RB | 1..358 | 519..162 | 1740 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 992 | CG13240-RC | 103..603 | 519..19 | 2460 | 99.4 | Minus |
l(2)35Di-RA | 710 | CG13240-RA | 103..603 | 519..19 | 2460 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15750721..15750976 | 264..519 | 1265 | 99.6 | Plus |
2L | 23513712 | 2L | 15749708..15749851 | 19..162 | 705 | 99.3 | Plus |
2L | 23513712 | 2L | 15750549..15750652 | 162..265 | 505 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:32:01 has no hits.
BO15381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:33 Download gff for
BO15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 16..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:11 Download gff for
BO15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 16..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:59:58 Download gff for
BO15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..608 | 14..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:19 Download gff for
BO15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..608 | 14..519 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:19 Download gff for
BO15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15749709..15749851 | 20..162 | 99 | <- | Plus |
2L | 15750550..15750651 | 163..264 | 99 | <- | Plus |
2L | 15750722..15750976 | 265..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:59:58 Download gff for
BO15381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15749709..15749851 | 20..162 | 99 | <- | Plus |
arm_2L | 15750550..15750651 | 163..264 | 99 | <- | Plus |
arm_2L | 15750722..15750976 | 265..519 | 99 | | Plus |
BO15381.5prime Sequence
533 bp (532 high quality bases) assembled on 2006-05-29
> BO15381.5prime
GAAGTTATCAGTCGACATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGT
GTGATCCACTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAA
GGTCTCCGATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACG
AGTCGCCGCTGAAAGCTGCAAGCTTTCTAGACC
BO15381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13240-PA | 504 | l(2)35Di-RA | 1..501 | 17..517 | 2430 | 99.4 | Plus |
CG13240-PB | 417 | l(2)35Di-RB | 1..358 | 17..374 | 1740 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 992 | CG13240-RC | 103..603 | 17..517 | 2460 | 99.4 | Plus |
l(2)35Di-RA | 710 | CG13240-RA | 103..603 | 17..517 | 2460 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15750721..15750976 | 272..17 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 15749708..15749851 | 517..374 | 705 | 99.3 | Minus |
2L | 23513712 | 2L | 15750549..15750652 | 374..271 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:27:47 has no hits.
BO15381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:34 Download gff for
BO15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:12 Download gff for
BO15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13240-PA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:33 Download gff for
BO15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..608 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:12 Download gff for
BO15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..608 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:12 Download gff for
BO15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15749709..15749851 | 374..516 | 99 | <- | Minus |
2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
2L | 15750722..15750976 | 17..271 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:33 Download gff for
BO15381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15749709..15749851 | 374..516 | 99 | <- | Minus |
arm_2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
arm_2L | 15750722..15750976 | 17..271 | 99 | | Minus |
BO15381.complete Sequence
535 bp (535 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633439
> BO15381.complete
GAAGTTATCAGTCGACATGGTAGCTGGTGGTGCCTCGGAAACGGGCGGCG
TGAAGCCGATGGTAATTGCGGGCCGCATGGTGCGGGAGCGGGAGCGCCTG
ATCGGCATGTCGCCGGAGGAGCGCGCCTGGCGCAAACAGTGGCTGAAGGA
CCAGGAGCTGCACCATGGACCCCGCAAGGTGCCCGCCCTGGAGCTGGAGC
TGAACAACCCCATCAAGCGCTTCTACCGCGCTCCCCTCGACAAGGTCTGC
AATGTTTTGGAACCCGTCCTGGGCTTTCAGCGCGCGTACACCGTGCGCTT
CTGGACCGGAAAGGCTCTGCTCGCCCTAACCGGAATCTACGCCGGCGCCT
ACTACTTCAAGTACAATCAGAATGACTGGACCCGGAAGGGCGGCTGGCGT
GTGATCCACTCGCGCAAGCAGTGCGTGCCCGGAGATGAGGGCTATCCCAA
GGTCTCCGATCGATCGGCGCCTTCCGATTACGCGGCTCGCGGATTCAACG
AGTCGCCGCTGAAAGCTGCAAGCTTTCTAGACCAT
BO15381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 504 | CG13240-PC | 1..501 | 17..517 | 2460 | 99.4 | Plus |
l(2)35Di-RA | 504 | CG13240-PA | 1..501 | 17..517 | 2460 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-RC | 992 | CG13240-RC | 103..603 | 17..517 | 2460 | 99.4 | Plus |
l(2)35Di-RA | 710 | CG13240-RA | 103..603 | 17..517 | 2460 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15750721..15750976 | 272..17 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 15749708..15749851 | 517..374 | 705 | 99.3 | Minus |
2L | 23513712 | 2L | 15750549..15750652 | 374..271 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:43:54 has no hits.
BO15381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:11 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 1..504 | 17..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:02 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 79..584 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:22 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..603 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:11 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 79..584 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:09 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Di-RA | 103..603 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:09 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15749705..15749851 | 374..519 | 97 | <- | Minus |
2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
2L | 15750722..15750976 | 17..271 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:22 Download gff for
BO15381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15749705..15749851 | 374..519 | 97 | <- | Minus |
arm_2L | 15750550..15750651 | 272..373 | 99 | <- | Minus |
arm_2L | 15750722..15750976 | 17..271 | 99 | | Minus |
BO15381.pep Sequence
Translation from 16 to 535
> BO15381.pep
MVAGGASETGGVKPMVIAGRMVRERERLIGMSPEERAWRKQWLKDQELHH
GPRKVPALELELNNPIKRFYRAPLDKVCNVLEPVLGFQRAYTVRFWTGKA
LLALTGIYAGAYYFKYNQNDWTRKGGWRVIHSRKQCVPGDEGYPKVSDRS
APSDYAARGFNESPLKAASFLDH
BO15381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Di-PC | 167 | CG13240-PC | 1..167 | 1..167 | 901 | 100 | Plus |
l(2)35Di-PA | 167 | CG13240-PA | 1..167 | 1..167 | 901 | 100 | Plus |