Clone Sequence Records
BO15382.3prime Sequence
551 bp (550 high quality bases) assembled on 2006-06-16
> BO15382.3prime
ATGGTCTAGAAAGCTTGCAACTTGCTCCGGCGGCTGGCGCAAGTGCTCTG
GGATCTCCTGCAGCTCAGTCCTGGAAGCCTGCAGCGCTACGCCCTCGGGC
AGATTACGTTCAATATACTCTAGAAATGTATCTAGCGTGGAGCCCGTCAA
CTTGTGGAAGTTCATATAGCGGAAGTGGGTTCGCACCTCGTACTGTACGC
GATGTTTCTTGTAGATATGCACCGACTTCAGGAGCGTCATCCGCTCGTGG
TGCGCCTTGCGAGGTGACCAACATTTTCCCTTTTCAATGCCCAAATGCTC
GGCAGCAGTAGTAGCAAACCAGGTGTAGCTCTTCAGAACTGCCGGATCAA
TACCCCGCAGCTCAATCTCCAGCTTGCTGTAGAGTTTATCCGGTTCCGGA
GCAGGTGCCGCAGGTGAAAGATTGCCTTGTACGCCGGAACTGGTGTTTAC
CGTGGACAGAGCCCGCATTGGCTGTGTCCAGCGGAGCGTCTTTATAGCCT
GGGAATATAAATCTAGATGTTTCATATGCATTTTCATGTCGACTGATAAC
T
BO15382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4247-PB | 522 | mRpS10-RB | 1..519 | 537..19 | 2595 | 100 | Minus |
CG4247-PA | 492 | mRpS10-RA | 7..489 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RB | 746 | CG4247-RB | 61..579 | 537..19 | 2595 | 100 | Minus |
mRpS10-RA | 723 | CG4247-RA | 74..556 | 501..19 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15229762..15230027 | 537..272 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 15230096..15230349 | 272..19 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:42:15 has no hits.
BO15382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:35 Download gff for
BO15382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PB | 1..522 | 18..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:14 Download gff for
BO15382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PB | 1..522 | 18..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:15 Download gff for
BO15382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 54..583 | 13..548 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:52 Download gff for
BO15382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 54..583 | 13..548 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:52 Download gff for
BO15382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15230097..15230353 | 13..271 | 98 | | Minus |
3R | 15229755..15230027 | 272..548 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:15 Download gff for
BO15382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11055819..11056075 | 13..271 | 98 | | Minus |
arm_3R | 11055477..11055749 | 272..548 | 98 | -> | Minus |
BO15382.5prime Sequence
551 bp (550 high quality bases) assembled on 2006-06-16
> BO15382.5prime
GAAGTTATCAGTCGACATGAAAATGCATATGAAACATCTAGATTTATATT
CCCAGGCTATAAAGACGCTCCGCTGGACACAGCCAATGCGGGCTCTGTCC
ACGGTAAACACCAGTTCCGGCGTACAAGGCAATCTTTCACCTGCGGCACC
TGCTCCGGAACCGGATAAACTCTACAGCAAGCTGGAGATTGAGCTGCGGG
GTATTGATCCGGCAGTTCTGAAGAGCTACACCTGGTTTGCTACTACTGCT
GCCGAGCATTTGGGCATTGAAAAGGGAAAATGTTGGTCACCTCGCAAGGC
GCACCACGAGCGGATGACGCTCCTGAAGTCGGTGCATATCTACAAGAAAC
ATCGCGTACAGTACGAGGTGCGAACCCACTTCCGCTATATGAACTTCCAC
AAGTTGACGGGCTCCACGCTAGATACATTTCTAGAGTATATTGAACGTAA
TCTGCCCGAGGGCGTAGCGCTGCAGGCTTCCAGGACTGAGCTGCAGGAGA
TCCCAGAGCACTTGCGCCAGCCGCCGGAGCAAGTTGCAAGCTTTCTAGAC
C
BO15382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4247-PB | 522 | mRpS10-RB | 1..519 | 17..535 | 2595 | 100 | Plus |
CG4247-PA | 492 | mRpS10-RA | 7..489 | 53..535 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RB | 746 | CG4247-RB | 61..579 | 17..535 | 2595 | 100 | Plus |
mRpS10-RA | 723 | CG4247-RA | 74..556 | 53..535 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15229762..15230027 | 17..282 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 15230096..15230349 | 282..535 | 1270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:11:33 has no hits.
BO15382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:36 Download gff for
BO15382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PB | 1..522 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:15 Download gff for
BO15382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PB | 1..522 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:48 Download gff for
BO15382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 54..583 | 6..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:29 Download gff for
BO15382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 54..583 | 6..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:29 Download gff for
BO15382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15229755..15230027 | 6..282 | 98 | -> | Plus |
3R | 15230097..15230353 | 283..541 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:48 Download gff for
BO15382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11055477..11055749 | 6..282 | 98 | -> | Plus |
arm_3R | 11055819..11056075 | 283..541 | 98 | | Plus |
BO15382.complete Sequence
553 bp (553 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633440
> BO15382.complete
GAAGTTATCAGTCGACATGAAAATGCATATGAAACATCTAGATTTATATT
CCCAGGCTATAAAGACGCTCCGCTGGACACAGCCAATGCGGGCTCTGTCC
ACGGTAAACACCAGTTCCGGCGTACAAGGCAATCTTTCACCTGCGGCACC
TGCTCCGGAACCGGATAAACTCTACAGCAAGCTGGAGATTGAGCTGCGGG
GTATTGATCCGGCAGTTCTGAAGAGCTACACCTGGTTTGCTACTACTGCT
GCCGAGCATTTGGGCATTGAAAAGGGAAAATGTTGGTCACCTCGCAAGGC
GCACCACGAGCGGATGACGCTCCTGAAGTCGGTGCATATCTACAAGAAAC
ATCGCGTACAGTACGAGGTGCGAACCCACTTCCGCTATATGAACTTCCAC
AAGTTGACGGGCTCCACGCTAGATACATTTCTAGAGTATATTGAACGTAA
TCTGCCCGAGGGCGTAGCGCTGCAGGCTTCCAGGACTGAGCTGCAGGAGA
TCCCAGAGCACTTGCGCCAGCCGCCGGAGCAAGTTGCAAGCTTTCTAGAC
CAT
BO15382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RB | 522 | CG4247-PB | 1..519 | 17..535 | 2595 | 100 | Plus |
mRpS10-RA | 492 | CG4247-PA | 7..489 | 53..535 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RB | 746 | CG4247-RB | 61..579 | 17..535 | 2595 | 100 | Plus |
mRpS10-RA | 723 | CG4247-RA | 74..556 | 53..535 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15229762..15230027 | 17..282 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 15230096..15230349 | 282..535 | 1270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:08:15 has no hits.
BO15382.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:12 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 1..522 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:05 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 1..532 | 9..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:46 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 61..579 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:12 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 1..532 | 9..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:35 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RB | 61..579 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:35 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15230097..15230349 | 283..537 | 99 | | Plus |
3R | 15229762..15230027 | 17..282 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:46 Download gff for
BO15382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11055484..11055749 | 17..282 | 100 | -> | Plus |
arm_3R | 11055819..11056071 | 283..537 | 99 | | Plus |
BO15382.pep Sequence
Translation from 16 to 553
> BO15382.pep
MKMHMKHLDLYSQAIKTLRWTQPMRALSTVNTSSGVQGNLSPAAPAPEPD
KLYSKLEIELRGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERM
TLLKSVHIYKKHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGV
ALQASRTELQEIPEHLRQPPEQVASFLDH
BO15382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-PB | 173 | CG4247-PB | 1..173 | 1..173 | 915 | 100 | Plus |
mRpS10-PA | 163 | CG4247-PA | 3..163 | 13..173 | 849 | 100 | Plus |