Clone Sequence Records
BO15386.3prime Sequence
796 bp (748 high quality bases) assembled on 2006-06-16
> BO15386.3prime
ATGGTCTAGAAAGCTTGCCACACCTTACAATTTCATGTTCTCGATCTCGT
CCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAGG
CACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGGC
GAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAAA
TGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTTG
CGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTGA
TATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGCG
AATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGATC
ATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCGA
TACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGAA
ACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCACT
TCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTAG
ATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGCA
TAACACAGCGCAAACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAGG
ACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAAGGGTGTGAGAAA
GCCGAGGGAGCCCCAATGGAAGGCCCTGACGGGGGGCACAGATTGC
BO15386.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PC | 1128 | CG33156-RC | 348..1118 | 796..26 | 3805 | 99.7 | Minus |
CG33156-PA | 1365 | CG33156-RA | 585..1355 | 796..26 | 3805 | 99.7 | Minus |
CG33156-PE | 1473 | CG33156-RE | 693..1463 | 796..26 | 3805 | 99.7 | Minus |
CG33156-PB | 1362 | CG33156-RB | 582..1352 | 796..26 | 3805 | 99.7 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 480..298 | 465 | 90.1 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 480..298 | 465 | 90.1 | Minus |
CG6145-PB | 1263 | CG6145-RB | 799..981 | 480..298 | 465 | 90.1 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1431..1496 | 148..83 | 155 | 89.3 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1515..1580 | 148..83 | 155 | 89.3 | Minus |
CG6145-PB | 1263 | CG6145-RB | 1131..1196 | 148..83 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RF | 1795 | CG33156-RF | 652..1429 | 796..19 | 3830 | 99.5 | Minus |
CG33156-RB | 1824 | CG33156-RB | 681..1458 | 796..19 | 3830 | 99.5 | Minus |
CG33156-RE | 2330 | CG33156-RE | 1187..1964 | 796..19 | 3830 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549446 | 304..796 | 2435 | 99.6 | Plus |
2R | 25286936 | 2R | 13548610..13548896 | 19..305 | 1405 | 99.3 | Plus |
2R | 25286936 | 2R | 13538198..13538468 | 304..574 | 770 | 85.6 | Plus |
2R | 25286936 | 2R | 13537799..13538051 | 53..305 | 545 | 81 | Plus |
2R | 25286936 | 2R | 13538625..13538765 | 656..796 | 300 | 80.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:42:33 has no hits.
BO15386.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:39 Download gff for
BO15386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PE | 693..1473 | 18..796 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:19 Download gff for
BO15386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PE | 693..1473 | 18..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:20 Download gff for
BO15386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1187..1964 | 19..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:55 Download gff for
BO15386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1187..1964 | 19..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:55 Download gff for
BO15386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13548610..13548894 | 19..303 | 99 | <- | Plus |
2R | 13548954..13549446 | 304..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:20 Download gff for
BO15386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436115..9436399 | 19..303 | 99 | <- | Plus |
arm_2R | 9436459..9436951 | 304..796 | 99 | | Plus |
BO15386.5prime Sequence
829 bp (751 high quality bases) assembled on 2006-06-16
> BO15386.5prime
GAAGTTATCAGTCGACATGCCAGCACCAGAGGACCTAAACTCCTCCGACC
AAGAGGAATATTTCTGCACCGAAAAGGACGCCGCTGCCGATGGAAGTCAT
CTGTTGCATGCCCCTGGAACGGTGGATGGAGCAACTGCATCCACCTCGGC
TCCGGGACTGGGCGGCAACCACATGACCAGCAGCTGGTGGTGGCGCACTC
GCAGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGC
ATCATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCA
ACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGG
TCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTG
CTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGA
TGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAG
TGACTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATA
GTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCA
GCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTC
TCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTG
GAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCA
TCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAA
ATGGTGAGGCGCGACCTGCAGCCAACAGC
BO15386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PA | 1365 | CG33156-RA | 1..813 | 17..829 | 4040 | 99.8 | Plus |
CG33156-PB | 1362 | CG33156-RB | 173..810 | 192..829 | 3165 | 99.8 | Plus |
CG33156-PE | 1473 | CG33156-RE | 285..921 | 193..829 | 3160 | 99.8 | Plus |
CG33156-PC | 1128 | CG33156-RC | 1..576 | 254..829 | 2855 | 99.8 | Plus |
CG6145-PA | 1563 | CG6145-RA | 272..392 | 225..345 | 330 | 90.9 | Plus |
CG6145-PC | 1647 | CG6145-RC | 356..476 | 225..345 | 330 | 90.9 | Plus |
CG6145-PB | 1263 | CG6145-RB | 1..92 | 254..345 | 260 | 91.3 | Plus |
CG6145-PA | 1563 | CG6145-RA | 601..689 | 494..582 | 195 | 88.7 | Plus |
CG6145-PC | 1647 | CG6145-RC | 685..773 | 494..582 | 195 | 88.7 | Plus |
CG6145-PB | 1263 | CG6145-RB | 301..389 | 494..582 | 195 | 88.7 | Plus |
CG6145-PA | 1563 | CG6145-RA | 430..485 | 386..441 | 155 | 91 | Plus |
CG6145-PC | 1647 | CG6145-RC | 514..569 | 386..441 | 155 | 91 | Plus |
CG6145-PB | 1263 | CG6145-RB | 130..185 | 386..441 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RA | 1874 | CG33156-RA | 147..959 | 17..829 | 4050 | 99.9 | Plus |
CG33156-RF | 1795 | CG33156-RF | 243..880 | 192..829 | 3175 | 99.8 | Plus |
CG33156-RB | 1824 | CG33156-RB | 272..909 | 192..829 | 3175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13549599..13549917 | 510..192 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 13549218..13549536 | 829..511 | 1580 | 99.7 | Minus |
2R | 25286936 | 2R | 13552107..13552283 | 193..17 | 885 | 100 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 741..511 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13539104..13539350 | 441..192 | 585 | 83.2 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:39:57 has no hits.
BO15386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:40 Download gff for
BO15386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:20 Download gff for
BO15386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:24 Download gff for
BO15386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 137..959 | 6..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:19 Download gff for
BO15386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 137..959 | 6..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:19 Download gff for
BO15386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13549218..13549536 | 511..829 | 99 | <- | Minus |
2R | 13549599..13549916 | 193..510 | 100 | <- | Minus |
2R | 13552108..13552293 | 6..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:24 Download gff for
BO15386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9439613..9439798 | 6..192 | 97 | | Minus |
arm_2R | 9436723..9437041 | 511..829 | 99 | <- | Minus |
arm_2R | 9437104..9437421 | 193..510 | 100 | <- | Minus |
BO15386.complete Sequence
1396 bp (1396 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633441
> BO15386.complete
GAAGTTATCAGTCGACATGCCAGCACCAGAGGACCTAAACTCCTCCGACC
AAGAGGAATATTTCTGCACCGAAAAGGACGCCGCTGCCGATGGAAGTCAT
CTGTTGCATGCCCCTGGAACGGTGGATGGAGCAACTGCATCCACCTCGGC
TCCGGGACTGGGCGGCAACCACATGACCAGCAGCTGGTGGTGGCGCACTC
GCAGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGC
ATCATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCA
ACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGG
TCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTG
CTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGA
TGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAG
TGACTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATA
GTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCA
GCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTC
TCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTG
GAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCA
TCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAG
ATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTG
GTCATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCT
GGACGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGA
CGCCCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATC
CATCCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCT
TAGCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAG
TATCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAAC
AGGCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTA
TCCCGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCT
CCCTAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTG
GACGAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGA
GATCGAGAACATGAAATTGTACGATGTGGCAAGCTTTCTAGACCAT
BO15386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RA | 1365 | CG33156-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG33156-RF | 1353 | CG33156-PF | 164..1350 | 192..1378 | 5935 | 100 | Plus |
CG33156-RB | 1362 | CG33156-PB | 173..1359 | 192..1378 | 5935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RA | 1874 | CG33156-RA | 147..1508 | 17..1378 | 6810 | 100 | Plus |
CG33156-RF | 1795 | CG33156-RF | 243..1429 | 192..1378 | 5935 | 100 | Plus |
CG33156-RB | 1824 | CG33156-RB | 272..1458 | 192..1378 | 5935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549536 | 1093..511 | 2915 | 100 | Minus |
2R | 25286936 | 2R | 13549599..13549917 | 510..192 | 1595 | 100 | Minus |
2R | 25286936 | 2R | 13548610..13548896 | 1378..1092 | 1435 | 100 | Minus |
2R | 25286936 | 2R | 13552107..13552283 | 193..17 | 885 | 100 | Minus |
2R | 25286936 | 2R | 13538198..13538468 | 1093..823 | 770 | 85.6 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 741..511 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13539104..13539350 | 441..192 | 585 | 83.2 | Minus |
2R | 25286936 | 2R | 13537799..13538051 | 1344..1092 | 545 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:18 has no hits.
BO15386.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:15 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 1..1365 | 17..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:33:11 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 114..1485 | 6..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:16 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 147..1508 | 17..1380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:15 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 114..1485 | 6..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:59 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RA | 147..1508 | 17..1380 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:59 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13552108..13552283 | 17..192 | 100 | | Minus |
2R | 13549599..13549916 | 193..510 | 100 | <- | Minus |
2R | 13548608..13548894 | 1094..1380 | 99 | <- | Minus |
2R | 13548954..13549536 | 511..1093 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:16 Download gff for
BO15386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436113..9436399 | 1094..1380 | 99 | <- | Minus |
arm_2R | 9436459..9437041 | 511..1093 | 100 | <- | Minus |
arm_2R | 9437104..9437421 | 193..510 | 100 | <- | Minus |
arm_2R | 9439613..9439788 | 17..192 | 100 | | Minus |
BO15386.pep Sequence
Translation from 16 to 1396
> BO15386.pep
MPAPEDLNSSDQEEYFCTEKDAAADGSHLLHAPGTVDGATASTSAPGLGG
NHMTSSWWWRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWY
KPPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNE
NVRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPP
VMAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDR
KHEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYI
TSVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPI
VVPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCI
CAQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMK
LYDVASFLDH
BO15386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PA | 454 | CG33156-PA | 1..454 | 1..454 | 2371 | 100 | Plus |
CG33156-PE | 490 | CG33156-PE | 73..490 | 37..454 | 2067 | 96.2 | Plus |
CG33156-PF | 450 | CG33156-PF | 56..450 | 60..454 | 2041 | 100 | Plus |
CG33156-PB | 453 | CG33156-PB | 59..453 | 60..454 | 2041 | 100 | Plus |
CG33156-PC | 375 | CG33156-PC | 1..375 | 80..454 | 1933 | 100 | Plus |