Clone BO15389 Report

Search the DGRC for BO15389

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptcbx-RA
Protein status:BO15389.pep: full length peptide match
Sequenced Size:676

Clone Sequence Records

BO15389.3prime Sequence

674 bp (673 high quality bases) assembled on 2006-06-16

> BO15389.3prime
ATGGTCTAGAAAGCTTGCCTCAATGCTAAGTGGCTTAAACTCGCCCTCCT
TAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGAA
GGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCCC
GTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCGG
TGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTGT
ACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCTC
GCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGAT
CGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTCT
CCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGTA
CGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGAA
GACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAAA
ACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACTG
CAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCCG
ACTCAATCATGTCGACTGATAACT

BO15389.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PA 645 cbx-RA 1..642 660..19 3210 100 Minus
CG10536-PB 735 cbx-RB 91..732 660..19 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..825 660..19 3210 100 Minus
cbx-RA 1036 CG10536-RA 312..953 660..19 3210 100 Minus
cbx-RC 766 CG10536-RC 135..456 660..321 1420 94.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864593..9865070 19..496 2390 100 Plus
2R 25286936 2R 9865124..9865227 496..599 520 100 Plus
2R 25286936 2R 9865290..9865350 600..660 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:42:05 has no hits.

BO15389.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:41 Download gff for BO15389.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-PB 91..735 15..660 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:21 Download gff for BO15389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 91..735 15..660 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:14 Download gff for BO15389.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..956 15..660 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:29 Download gff for BO15389.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..956 15..660 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:29 Download gff for BO15389.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864589..9865069 15..495 99 <- Plus
2R 9865124..9865227 496..599 100 <- Plus
2R 9865290..9865361 600..673 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:14 Download gff for BO15389.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752094..5752574 15..495 99 <- Plus
arm_2R 5752629..5752732 496..599 100 <- Plus
arm_2R 5752795..5752866 600..673 93   Plus

BO15389.5prime Sequence

674 bp (673 high quality bases) assembled on 2006-06-16

> BO15389.5prime
GAAGTTATCAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
GCATTGAGGCAAGCTTTCTAGACC

BO15389.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PA 645 cbx-RA 1..642 17..658 3210 100 Plus
CG10536-PB 735 cbx-RB 91..732 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..825 17..658 3210 100 Plus
cbx-RA 1036 CG10536-RA 312..953 17..658 3210 100 Plus
cbx-RC 766 CG10536-RC 135..456 17..356 1420 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864593..9865070 658..181 2390 100 Minus
2R 25286936 2R 9865124..9865227 181..78 520 100 Minus
2R 25286936 2R 9865290..9865350 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-09 10:57:23 has no hits.

BO15389.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:42 Download gff for BO15389.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-PB 91..735 17..662 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:23 Download gff for BO15389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 91..735 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:30 Download gff for BO15389.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..956 17..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:58 Download gff for BO15389.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..956 17..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:58 Download gff for BO15389.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864589..9865069 182..662 99 <- Minus
2R 9865124..9865227 78..181 100 <- Minus
2R 9865290..9865361 4..77 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:30 Download gff for BO15389.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752094..5752574 182..662 99 <- Minus
arm_2R 5752629..5752732 78..181 100 <- Minus
arm_2R 5752795..5752866 4..77 93   Minus

BO15389.complete Sequence

676 bp (676 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633442

> BO15389.complete
GAAGTTATCAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
GCATTGAGGCAAGCTTTCTAGACCAT

BO15389.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 735 CG10536-PB 91..732 17..658 3210 100 Plus
cbx-RA 645 CG10536-PA 1..642 17..658 3210 100 Plus
cbx-RC 552 CG10536-PC 1..322 17..356 1395 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 184..825 17..658 3210 100 Plus
cbx-RA 1036 CG10536-RA 312..953 17..658 3210 100 Plus
cbx-RC 766 CG10536-RC 135..456 17..356 1395 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864593..9865070 658..181 2390 100 Minus
2R 25286936 2R 9865124..9865227 181..78 520 100 Minus
2R 25286936 2R 9865290..9865350 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:07:37 has no hits.

BO15389.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:04 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 91..735 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:50 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 165..809 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:37 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..953 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:04 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 165..809 17..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:19 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RA 312..953 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:19 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9864591..9865069 182..660 99 <- Minus
2R 9865124..9865227 78..181 100 <- Minus
2R 9865290..9865350 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:37 Download gff for BO15389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752096..5752574 182..660 99 <- Minus
arm_2R 5752629..5752732 78..181 100 <- Minus
arm_2R 5752795..5752855 17..77 100   Minus

BO15389.pep Sequence

Translation from 16 to 676

> BO15389.pep
MIESEKLSGIYVIPSYANSLQWFGVFFGRQGLYAESVFRFTILLPDRFPD
DKSLPSIIFQQDVIHPHVCPYTHSLDVSHAFPEWRCGEDHLWQLLKYLQV
IFSDPLDSIRGIEVDKLKNSEAAELLMNNKEEYVARVQENIKESKEHIFD
TPPTEDPHYIVFEKFQQDVHGPVLERIKAGRSKLTEPSAQQANGGHATGL
SWVKEGEFKPLSIEASFLDH

BO15389.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-PA 214 CG10536-PA 1..214 1..214 1139 100 Plus
cbx-PB 244 CG10536-PB 31..244 1..214 1139 100 Plus
cbx-PC 183 CG10536-PC 1..183 1..214 937 85.5 Plus
CG16894-PA 266 CG16894-PA 29..211 5..179 457 45.4 Plus