Clone Sequence Records
BO15389.3prime Sequence
674 bp (673 high quality bases) assembled on 2006-06-16
> BO15389.3prime
ATGGTCTAGAAAGCTTGCCTCAATGCTAAGTGGCTTAAACTCGCCCTCCT
TAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGAA
GGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCCC
GTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCGG
TGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTGT
ACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCTC
GCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGAT
CGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTCT
CCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGTA
CGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGAA
GACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAAA
ACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACTG
CAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCCG
ACTCAATCATGTCGACTGATAACT
BO15389.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PA | 645 | cbx-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
CG10536-PB | 735 | cbx-RB | 91..732 | 660..19 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 184..825 | 660..19 | 3210 | 100 | Minus |
cbx-RA | 1036 | CG10536-RA | 312..953 | 660..19 | 3210 | 100 | Minus |
cbx-RC | 766 | CG10536-RC | 135..456 | 660..321 | 1420 | 94.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864593..9865070 | 19..496 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 9865124..9865227 | 496..599 | 520 | 100 | Plus |
2R | 25286936 | 2R | 9865290..9865350 | 600..660 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:42:05 has no hits.
BO15389.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:41 Download gff for
BO15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 91..735 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:21 Download gff for
BO15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 91..735 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:14 Download gff for
BO15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..956 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:29 Download gff for
BO15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..956 | 15..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:29 Download gff for
BO15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864589..9865069 | 15..495 | 99 | <- | Plus |
2R | 9865124..9865227 | 496..599 | 100 | <- | Plus |
2R | 9865290..9865361 | 600..673 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:14 Download gff for
BO15389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752094..5752574 | 15..495 | 99 | <- | Plus |
arm_2R | 5752629..5752732 | 496..599 | 100 | <- | Plus |
arm_2R | 5752795..5752866 | 600..673 | 93 | | Plus |
BO15389.5prime Sequence
674 bp (673 high quality bases) assembled on 2006-06-16
> BO15389.5prime
GAAGTTATCAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
GCATTGAGGCAAGCTTTCTAGACC
BO15389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PA | 645 | cbx-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG10536-PB | 735 | cbx-RB | 91..732 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 184..825 | 17..658 | 3210 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 312..953 | 17..658 | 3210 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 135..456 | 17..356 | 1420 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864593..9865070 | 658..181 | 2390 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 181..78 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865350 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 10:57:23 has no hits.
BO15389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:42 Download gff for
BO15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 91..735 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:23 Download gff for
BO15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 91..735 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:30 Download gff for
BO15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..956 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:58 Download gff for
BO15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..956 | 17..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:58 Download gff for
BO15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864589..9865069 | 182..662 | 99 | <- | Minus |
2R | 9865124..9865227 | 78..181 | 100 | <- | Minus |
2R | 9865290..9865361 | 4..77 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:30 Download gff for
BO15389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752094..5752574 | 182..662 | 99 | <- | Minus |
arm_2R | 5752629..5752732 | 78..181 | 100 | <- | Minus |
arm_2R | 5752795..5752866 | 4..77 | 93 | | Minus |
BO15389.complete Sequence
676 bp (676 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633442
> BO15389.complete
GAAGTTATCAGTCGACATGATTGAGTCGGAGAAGTTGAGTGGGATATATG
TGATACCCAGCTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGC
CGACAGGGCTTGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCC
AGATCGTTTTCCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGG
ATGTGATTCATCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGC
CACGCCTTCCCGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTT
AAAGTACCTGCAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCA
TTGAGGTAGATAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAAT
AACAAGGAGGAGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAA
GGAGCATATATTTGACACCCCACCCACCGAAGATCCGCACTACATAGTAT
TCGAGAAGTTCCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAG
GCCGGAAGAAGCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGG
ACATGCAACTGGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTA
GCATTGAGGCAAGCTTTCTAGACCAT
BO15389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 735 | CG10536-PB | 91..732 | 17..658 | 3210 | 100 | Plus |
cbx-RA | 645 | CG10536-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
cbx-RC | 552 | CG10536-PC | 1..322 | 17..356 | 1395 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 184..825 | 17..658 | 3210 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 312..953 | 17..658 | 3210 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 135..456 | 17..356 | 1395 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864593..9865070 | 658..181 | 2390 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 181..78 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865350 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:07:37 has no hits.
BO15389.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:04 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 91..735 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:50 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 165..809 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:37 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..953 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:04 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 165..809 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:19 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RA | 312..953 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:19 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864591..9865069 | 182..660 | 99 | <- | Minus |
2R | 9865124..9865227 | 78..181 | 100 | <- | Minus |
2R | 9865290..9865350 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:37 Download gff for
BO15389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752096..5752574 | 182..660 | 99 | <- | Minus |
arm_2R | 5752629..5752732 | 78..181 | 100 | <- | Minus |
arm_2R | 5752795..5752855 | 17..77 | 100 | | Minus |
BO15389.pep Sequence
Translation from 16 to 676
> BO15389.pep
MIESEKLSGIYVIPSYANSLQWFGVFFGRQGLYAESVFRFTILLPDRFPD
DKSLPSIIFQQDVIHPHVCPYTHSLDVSHAFPEWRCGEDHLWQLLKYLQV
IFSDPLDSIRGIEVDKLKNSEAAELLMNNKEEYVARVQENIKESKEHIFD
TPPTEDPHYIVFEKFQQDVHGPVLERIKAGRSKLTEPSAQQANGGHATGL
SWVKEGEFKPLSIEASFLDH
BO15389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-PA | 214 | CG10536-PA | 1..214 | 1..214 | 1139 | 100 | Plus |
cbx-PB | 244 | CG10536-PB | 31..244 | 1..214 | 1139 | 100 | Plus |
cbx-PC | 183 | CG10536-PC | 1..183 | 1..214 | 937 | 85.5 | Plus |
CG16894-PA | 266 | CG16894-PA | 29..211 | 5..179 | 457 | 45.4 | Plus |