Clone BO15391 Report

Search the DGRC for BO15391

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:91
Vector:pDNR-Dual
Associated Gene/Transcripttwin-RC
Protein status:BO15391.pep: validated full length
Sequenced Size:1735

Clone Sequence Records

BO15391.3prime Sequence

787 bp (755 high quality bases) assembled on 2006-06-16

> BO15391.3prime
ATGGTCTAGAAAGCTTGCCCGGCGATTGATCAGCCCGTTAGGAGGCGCCT
GTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTGA
TCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCAG
CCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTCT
TCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTTG
GTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGTG
CGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTGT
AGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCCG
AGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACAG
CAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTGT
GGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGTC
TGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCGT
GCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCCC
ATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTTA
GGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTGC
CAGCTGATTGAACTCGATCAATGATTCCTTGATCAGC

BO15391.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31137-PA 1659 twin-RA 888..1656 787..19 3845 100 Minus
CG31137-PB 1638 twin-RB 867..1635 787..19 3845 100 Minus
CG31137-PE 1659 twin-RE 888..1656 787..19 3845 100 Minus
CG31137-PC 1704 twin-RC 933..1701 787..19 3845 100 Minus
CG31137-PD 1077 twin-RD 306..1074 787..19 3845 100 Minus
CG31137-PF 1659 twin-RF 888..1656 787..19 3845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RF 2690 CG31137-RF 1074..1842 787..19 3845 100 Minus
twin-RD 2950 CG31137-RD 1334..2102 787..19 3845 100 Minus
twin-RC 2586 CG31137-RC 970..1738 787..19 3845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24198439..24199207 19..787 3845 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:26:54 has no hits.

BO15391.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:43 Download gff for BO15391.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-PF 888..1659 18..787 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:25 Download gff for BO15391.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31137-PF 888..1659 18..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:25 Download gff for BO15391.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 970..1744 15..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:59 Download gff for BO15391.3prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 970..1744 15..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:59 Download gff for BO15391.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24198433..24199207 15..787 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:25 Download gff for BO15391.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024155..20024929 15..787 99   Plus

BO15391.5prime Sequence

922 bp (785 high quality bases) assembled on 2006-06-16

> BO15391.5prime
GAAGTTATCAGTCGACATGTGTATCTTTAAAAAAAGAGACGCTTATCATC
AGGCGGTTATTATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGAC
AAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGA
CATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCT
GCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCC
CTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCAT
GCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTC
TTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAAC
AACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCT
CGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACA
TCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGAC
AACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACT
GGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCT
ATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGT
CCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGA
GATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGG
AGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTACGAG
GGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAG
GAAGTACGTCGATGGCTGTGCC

BO15391.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31137-PC 1704 twin-RC 1..905 17..921 4525 100 Plus
CG31137-PA 1659 twin-RA 1..860 62..921 4300 100 Plus
CG31137-PE 1659 twin-RE 1..860 62..921 4300 100 Plus
CG31137-PF 1659 twin-RF 1..860 62..921 4300 100 Plus
CG31137-PB 1638 twin-RB 1..839 83..921 4195 100 Plus
CG31137-PD 1077 twin-RD 1..278 644..921 1390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RC 2586 CG31137-RC 38..942 17..921 4525 100 Plus
twin-RE 3548 CG31137-RE 320..1206 35..921 4435 100 Plus
twin-RF 2690 CG31137-RF 162..1046 37..921 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24199296..24199587 921..630 1460 100 Minus
3R 32079331 3R 24219964..24220157 385..192 955 99.5 Minus
3R 32079331 3R 24219600..24219776 560..384 885 100 Minus
3R 32079331 3R 24220214..24220345 198..67 660 100 Minus
3R 32079331 3R 24199882..24199951 630..561 350 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:45:59 has no hits.

BO15391.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:44 Download gff for BO15391.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-PC 1..905 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:26 Download gff for BO15391.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31137-PC 1..905 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:01 Download gff for BO15391.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 38..942 17..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:27 Download gff for BO15391.5prime
Subject Subject Range Query Range Percent Splice Strand
twin-RC 38..942 17..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:27 Download gff for BO15391.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24219600..24219775 385..560 100 <- Minus
3R 24219965..24220151 198..384 100 <- Minus
3R 24220215..24220343 69..197 100 <- Minus
3R 24220532..24220563 37..68 100 <- Minus
3R 24220828..24220847 17..36 100   Minus
3R 24199295..24199587 630..922 99 <- Minus
3R 24199883..24199951 561..629 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:01 Download gff for BO15391.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20025017..20025309 630..922 99 <- Minus
arm_3R 20025605..20025673 561..629 100 <- Minus
arm_3R 20045322..20045497 385..560 100 <- Minus
arm_3R 20045687..20045873 198..384 100 <- Minus
arm_3R 20045937..20046065 69..197 100 <- Minus
arm_3R 20046254..20046285 37..68 100 <- Minus
arm_3R 20046550..20046569 17..36 100   Minus

BO15391.complete Sequence

1735 bp (1735 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ633443

> BO15391.complete
GAAGTTATCAGTCGACATGTGTATCTTTAAAAAAAGAGACGCTTATCATC
AGGCGGTTATTATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGAC
AAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGA
CATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCT
GCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCC
CTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCAT
GCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTC
TTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAAC
AACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCT
CGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACA
TCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGAC
AACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACT
GGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCT
ATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGT
CCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGA
GATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGG
AGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTACGAG
GGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAG
GAAGTACGTCGATGGCTGTGCGATATTCTTCAGGGCGTCCAAGTTTACGC
TGATCAAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCCAATGCC
GAGGGCTCCGACAACATGCTGAACCGCGTAATGCCTAAGGATAACATCGG
TCTGGCCGCACTGCTCAAGGTGAAGGAGAACGCATGGGAGCCGATGTCCG
AGGTGACGCAGATCTCGCAGCCGCTGCTCGTCTGCACGGCGCACATACAC
TGGGACCCTGAGTTCTGCGACGTCAAGCTCATCCAGACGATGATGCTTAG
CAATGAGTTGAAGACGATCATCGACGAGGCGAGCCACAGTTTCCGACCTG
GTCACAAGAACGACTCCAATGCTGTCCAGCTGCTGCTGTGCGGTGACTTC
AACTCGCTACCCGATTCAGGCGTTGTGGAGTTTCTCGGCAAGGGCCGCGT
TTCCATGGATCATTTGGACTTCAAGGACATGGGCTACAAGTCCTGCCTGC
AGCGGCTGCTCTCGAACGACACCAACGAGTTTACGCACTCGTTCAAGCTA
GCCTCCGCCTACAACGAGGACATAATGCCGCACACCAACTATACGTTCGA
TTTTAAGGGCATCATCGACTACATTTTCTACACGAAGACGGGCATGGTGC
CGCTGGGCCTGCTGGGTCCTGTCTCCAATGATTGGCTGCGCGAGAATAAG
GTTGTTGGATGCCCACATCCGCATATACCCTCTGATCACTTCCCACTGCT
GGTCGAGCTAGAGCTGATGCATACGGCTAGCCAACAGGCGCCTCCTAACG
GGCTGATCAATCGCCGGGCAAGCTTTCTAGACCAT

BO15391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RC 1704 CG31137-PC 1..1701 17..1717 8505 100 Plus
twin-RF 1659 CG31137-PF 1..1656 62..1717 8280 100 Plus
twin-RE 1659 CG31137-PE 1..1656 62..1717 8280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
twin-RC 2586 CG31137-RC 38..1738 17..1717 8505 100 Plus
twin-RE 3548 CG31137-RE 320..2002 35..1717 8415 100 Plus
twin-RF 2690 CG31137-RF 162..1842 37..1717 8405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24198439..24199213 1717..943 3875 100 Minus
3R 32079331 3R 24199273..24199587 944..630 1575 100 Minus
3R 32079331 3R 24219964..24220157 385..192 955 99.5 Minus
3R 32079331 3R 24219600..24219776 560..384 885 100 Minus
3R 32079331 3R 24220214..24220345 198..67 660 100 Minus
3R 32079331 3R 24199882..24199951 630..561 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:38:56 has no hits.

BO15391.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:32 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 1..1704 17..1718 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:06 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 38..1738 17..1719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:21 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 38..1738 17..1719 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:32 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 38..1744 17..1721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:19 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
twin-RC 38..1738 17..1719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:19 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24198435..24199213 943..1719 99 <- Minus
3R 24199275..24199587 630..942 100 <- Minus
3R 24199883..24199951 561..629 100 <- Minus
3R 24219600..24219775 385..560 100 <- Minus
3R 24219965..24220151 198..384 100 <- Minus
3R 24220215..24220343 69..197 100 <- Minus
3R 24220532..24220563 37..68 100 <- Minus
3R 24220828..24220847 17..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:21 Download gff for BO15391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20024157..20024935 943..1719 99 <- Minus
arm_3R 20024997..20025309 630..942 100 <- Minus
arm_3R 20025605..20025673 561..629 100 <- Minus
arm_3R 20045322..20045497 385..560 100 <- Minus
arm_3R 20045687..20045873 198..384 100 <- Minus
arm_3R 20045937..20046065 69..197 100 <- Minus
arm_3R 20046254..20046285 37..68 100 <- Minus
arm_3R 20046550..20046569 17..36 100   Minus

BO15391.pep Sequence

Translation from 16 to 1735

> BO15391.pep
MCIFKKRDAYHQAVIMKGNHYKMSRNKDKYDSANRRQQIFLSQEDIAAGK
KTNWSGLEITGCVRNISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLR
TLDLSSNKLRSLPAELGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGL
MGNPLQKEFMNIYNEPNGTQKLLTYMLDNLSFTVNPPPQRPWLPLAKPNK
TRPACIFTVMCYNVLCDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYA
ADIISLQEIETEQFYHFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDG
CAIFFRASKFTLIKESLIEFNQLAMANAEGSDNMLNRVMPKDNIGLAALL
KVKENAWEPMSEVTQISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKT
IIDEASHSFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHL
DFKDMGYKSCLQRLLSNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGII
DYIFYTKTGMVPLGLLGPVSNDWLRENKVVGCPHPHIPSDHFPLLVELEL
MHTASQQAPPNGLINRRASFLDH

BO15391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
twin-PC 567 CG31137-PC 1..567 1..567 3020 100 Plus
twin-PF 552 CG31137-PF 1..552 16..567 2939 100 Plus
twin-PE 552 CG31137-PE 1..552 16..567 2939 100 Plus
twin-PA 552 CG31137-PA 1..552 16..567 2939 100 Plus
twin-PB 545 CG31137-PB 1..545 23..567 2897 100 Plus