Clone Sequence Records
BO15391.3prime Sequence
787 bp (755 high quality bases) assembled on 2006-06-16
> BO15391.3prime
ATGGTCTAGAAAGCTTGCCCGGCGATTGATCAGCCCGTTAGGAGGCGCCT
GTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTGA
TCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCAG
CCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTCT
TCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTTG
GTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGTG
CGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTGT
AGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCCG
AGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACAG
CAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTGT
GGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGTC
TGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCGT
GCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCCC
ATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTTA
GGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTGC
CAGCTGATTGAACTCGATCAATGATTCCTTGATCAGC
BO15391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31137-PA | 1659 | twin-RA | 888..1656 | 787..19 | 3845 | 100 | Minus |
CG31137-PB | 1638 | twin-RB | 867..1635 | 787..19 | 3845 | 100 | Minus |
CG31137-PE | 1659 | twin-RE | 888..1656 | 787..19 | 3845 | 100 | Minus |
CG31137-PC | 1704 | twin-RC | 933..1701 | 787..19 | 3845 | 100 | Minus |
CG31137-PD | 1077 | twin-RD | 306..1074 | 787..19 | 3845 | 100 | Minus |
CG31137-PF | 1659 | twin-RF | 888..1656 | 787..19 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RF | 2690 | CG31137-RF | 1074..1842 | 787..19 | 3845 | 100 | Minus |
twin-RD | 2950 | CG31137-RD | 1334..2102 | 787..19 | 3845 | 100 | Minus |
twin-RC | 2586 | CG31137-RC | 970..1738 | 787..19 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24198439..24199207 | 19..787 | 3845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:26:54 has no hits.
BO15391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:43 Download gff for
BO15391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-PF | 888..1659 | 18..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:25 Download gff for
BO15391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31137-PF | 888..1659 | 18..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:39:25 Download gff for
BO15391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 970..1744 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:59 Download gff for
BO15391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 970..1744 | 15..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:59 Download gff for
BO15391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24198433..24199207 | 15..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:39:25 Download gff for
BO15391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024155..20024929 | 15..787 | 99 | | Plus |
BO15391.5prime Sequence
922 bp (785 high quality bases) assembled on 2006-06-16
> BO15391.5prime
GAAGTTATCAGTCGACATGTGTATCTTTAAAAAAAGAGACGCTTATCATC
AGGCGGTTATTATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGAC
AAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGA
CATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCT
GCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCC
CTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCAT
GCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTC
TTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAAC
AACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCT
CGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACA
TCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGAC
AACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACT
GGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCT
ATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGT
CCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGA
GATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGG
AGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTACGAG
GGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAG
GAAGTACGTCGATGGCTGTGCC
BO15391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31137-PC | 1704 | twin-RC | 1..905 | 17..921 | 4525 | 100 | Plus |
CG31137-PA | 1659 | twin-RA | 1..860 | 62..921 | 4300 | 100 | Plus |
CG31137-PE | 1659 | twin-RE | 1..860 | 62..921 | 4300 | 100 | Plus |
CG31137-PF | 1659 | twin-RF | 1..860 | 62..921 | 4300 | 100 | Plus |
CG31137-PB | 1638 | twin-RB | 1..839 | 83..921 | 4195 | 100 | Plus |
CG31137-PD | 1077 | twin-RD | 1..278 | 644..921 | 1390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RC | 2586 | CG31137-RC | 38..942 | 17..921 | 4525 | 100 | Plus |
twin-RE | 3548 | CG31137-RE | 320..1206 | 35..921 | 4435 | 100 | Plus |
twin-RF | 2690 | CG31137-RF | 162..1046 | 37..921 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24199296..24199587 | 921..630 | 1460 | 100 | Minus |
3R | 32079331 | 3R | 24219964..24220157 | 385..192 | 955 | 99.5 | Minus |
3R | 32079331 | 3R | 24219600..24219776 | 560..384 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24220214..24220345 | 198..67 | 660 | 100 | Minus |
3R | 32079331 | 3R | 24199882..24199951 | 630..561 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:45:59 has no hits.
BO15391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:44 Download gff for
BO15391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-PC | 1..905 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:26 Download gff for
BO15391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31137-PC | 1..905 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:01 Download gff for
BO15391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 38..942 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:27 Download gff for
BO15391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 38..942 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:27 Download gff for
BO15391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24219600..24219775 | 385..560 | 100 | <- | Minus |
3R | 24219965..24220151 | 198..384 | 100 | <- | Minus |
3R | 24220215..24220343 | 69..197 | 100 | <- | Minus |
3R | 24220532..24220563 | 37..68 | 100 | <- | Minus |
3R | 24220828..24220847 | 17..36 | 100 | | Minus |
3R | 24199295..24199587 | 630..922 | 99 | <- | Minus |
3R | 24199883..24199951 | 561..629 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:01 Download gff for
BO15391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20025017..20025309 | 630..922 | 99 | <- | Minus |
arm_3R | 20025605..20025673 | 561..629 | 100 | <- | Minus |
arm_3R | 20045322..20045497 | 385..560 | 100 | <- | Minus |
arm_3R | 20045687..20045873 | 198..384 | 100 | <- | Minus |
arm_3R | 20045937..20046065 | 69..197 | 100 | <- | Minus |
arm_3R | 20046254..20046285 | 37..68 | 100 | <- | Minus |
arm_3R | 20046550..20046569 | 17..36 | 100 | | Minus |
BO15391.complete Sequence
1735 bp (1735 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633443
> BO15391.complete
GAAGTTATCAGTCGACATGTGTATCTTTAAAAAAAGAGACGCTTATCATC
AGGCGGTTATTATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGAC
AAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGA
CATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCT
GCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCC
CTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCAT
GCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTC
TTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAAC
AACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCT
CGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACA
TCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGAC
AACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACT
GGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCT
ATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGT
CCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGA
GATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGG
AGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTACGAG
GGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAG
GAAGTACGTCGATGGCTGTGCGATATTCTTCAGGGCGTCCAAGTTTACGC
TGATCAAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCCAATGCC
GAGGGCTCCGACAACATGCTGAACCGCGTAATGCCTAAGGATAACATCGG
TCTGGCCGCACTGCTCAAGGTGAAGGAGAACGCATGGGAGCCGATGTCCG
AGGTGACGCAGATCTCGCAGCCGCTGCTCGTCTGCACGGCGCACATACAC
TGGGACCCTGAGTTCTGCGACGTCAAGCTCATCCAGACGATGATGCTTAG
CAATGAGTTGAAGACGATCATCGACGAGGCGAGCCACAGTTTCCGACCTG
GTCACAAGAACGACTCCAATGCTGTCCAGCTGCTGCTGTGCGGTGACTTC
AACTCGCTACCCGATTCAGGCGTTGTGGAGTTTCTCGGCAAGGGCCGCGT
TTCCATGGATCATTTGGACTTCAAGGACATGGGCTACAAGTCCTGCCTGC
AGCGGCTGCTCTCGAACGACACCAACGAGTTTACGCACTCGTTCAAGCTA
GCCTCCGCCTACAACGAGGACATAATGCCGCACACCAACTATACGTTCGA
TTTTAAGGGCATCATCGACTACATTTTCTACACGAAGACGGGCATGGTGC
CGCTGGGCCTGCTGGGTCCTGTCTCCAATGATTGGCTGCGCGAGAATAAG
GTTGTTGGATGCCCACATCCGCATATACCCTCTGATCACTTCCCACTGCT
GGTCGAGCTAGAGCTGATGCATACGGCTAGCCAACAGGCGCCTCCTAACG
GGCTGATCAATCGCCGGGCAAGCTTTCTAGACCAT
BO15391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RC | 1704 | CG31137-PC | 1..1701 | 17..1717 | 8505 | 100 | Plus |
twin-RF | 1659 | CG31137-PF | 1..1656 | 62..1717 | 8280 | 100 | Plus |
twin-RE | 1659 | CG31137-PE | 1..1656 | 62..1717 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-RC | 2586 | CG31137-RC | 38..1738 | 17..1717 | 8505 | 100 | Plus |
twin-RE | 3548 | CG31137-RE | 320..2002 | 35..1717 | 8415 | 100 | Plus |
twin-RF | 2690 | CG31137-RF | 162..1842 | 37..1717 | 8405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24198439..24199213 | 1717..943 | 3875 | 100 | Minus |
3R | 32079331 | 3R | 24199273..24199587 | 944..630 | 1575 | 100 | Minus |
3R | 32079331 | 3R | 24219964..24220157 | 385..192 | 955 | 99.5 | Minus |
3R | 32079331 | 3R | 24219600..24219776 | 560..384 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24220214..24220345 | 198..67 | 660 | 100 | Minus |
3R | 32079331 | 3R | 24199882..24199951 | 630..561 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:56 has no hits.
BO15391.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:32 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 1..1704 | 17..1718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:06 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 38..1738 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:21 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 38..1738 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:32 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 38..1744 | 17..1721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:19 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
twin-RC | 38..1738 | 17..1719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:19 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24198435..24199213 | 943..1719 | 99 | <- | Minus |
3R | 24199275..24199587 | 630..942 | 100 | <- | Minus |
3R | 24199883..24199951 | 561..629 | 100 | <- | Minus |
3R | 24219600..24219775 | 385..560 | 100 | <- | Minus |
3R | 24219965..24220151 | 198..384 | 100 | <- | Minus |
3R | 24220215..24220343 | 69..197 | 100 | <- | Minus |
3R | 24220532..24220563 | 37..68 | 100 | <- | Minus |
3R | 24220828..24220847 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:21 Download gff for
BO15391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20024157..20024935 | 943..1719 | 99 | <- | Minus |
arm_3R | 20024997..20025309 | 630..942 | 100 | <- | Minus |
arm_3R | 20025605..20025673 | 561..629 | 100 | <- | Minus |
arm_3R | 20045322..20045497 | 385..560 | 100 | <- | Minus |
arm_3R | 20045687..20045873 | 198..384 | 100 | <- | Minus |
arm_3R | 20045937..20046065 | 69..197 | 100 | <- | Minus |
arm_3R | 20046254..20046285 | 37..68 | 100 | <- | Minus |
arm_3R | 20046550..20046569 | 17..36 | 100 | | Minus |
BO15391.pep Sequence
Translation from 16 to 1735
> BO15391.pep
MCIFKKRDAYHQAVIMKGNHYKMSRNKDKYDSANRRQQIFLSQEDIAAGK
KTNWSGLEITGCVRNISPSLWEFEHLTALYLNDNQLLRLPADVGMLTSLR
TLDLSSNKLRSLPAELGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGL
MGNPLQKEFMNIYNEPNGTQKLLTYMLDNLSFTVNPPPQRPWLPLAKPNK
TRPACIFTVMCYNVLCDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYA
ADIISLQEIETEQFYHFFLPELKNDGYEGIFSPKSRAKTMSELERKYVDG
CAIFFRASKFTLIKESLIEFNQLAMANAEGSDNMLNRVMPKDNIGLAALL
KVKENAWEPMSEVTQISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKT
IIDEASHSFRPGHKNDSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHL
DFKDMGYKSCLQRLLSNDTNEFTHSFKLASAYNEDIMPHTNYTFDFKGII
DYIFYTKTGMVPLGLLGPVSNDWLRENKVVGCPHPHIPSDHFPLLVELEL
MHTASQQAPPNGLINRRASFLDH
BO15391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
twin-PC | 567 | CG31137-PC | 1..567 | 1..567 | 3020 | 100 | Plus |
twin-PF | 552 | CG31137-PF | 1..552 | 16..567 | 2939 | 100 | Plus |
twin-PE | 552 | CG31137-PE | 1..552 | 16..567 | 2939 | 100 | Plus |
twin-PA | 552 | CG31137-PA | 1..552 | 16..567 | 2939 | 100 | Plus |
twin-PB | 545 | CG31137-PB | 1..545 | 23..567 | 2897 | 100 | Plus |