Clone BO15396 Report

Search the DGRC for BO15396

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:153
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptgrass-RA
Protein status:BO15396.pep: validated full length
Sequenced Size:1039

Clone Sequence Records

BO15396.3prime Sequence

763 bp (762 high quality bases) assembled on 2006-06-16

> BO15396.3prime
ATGGTCTAGAAAGCTTGCCAGGCCATTGCTGGCCATGGTGTCCGTGATCC
ACTGCACGTACTCGCCCACATTTGTGTACAGACCGGGCAGGCTAATCTGC
CCGCAGGTGACCACACCCTGGCTGACGATCCCGAACTCGACCATTTTCGG
CGCATACTCGCCCAAGTACTGGGCAGGTGCTTGGAGGGGGCCGCCGGAGT
CGCCCTTGCAGGAGTCCTGCAGGTCGCCACCACCCACGCAAAGTTGACTG
AGCGGCACTGCCCTGCGGTAGGCCTGGGAACAGGCGGATCGCGGCTGCAG
CGGCACGTTCGCCTGGAGCAACACATCCGACGACGAGCCGTTCTCCGTGG
TGCCCCAGCCGGTCACGAAGTAGGTGCTTATCTGCTCTGCCTTCTCCTTC
AGCTCATCCGTGATGGGCAGGCAAATGGGCTTGATGTGCTTCTGGAAGGG
GACGCTCCTGTTGAGCTTCAGGAGAGCTATGTCATGCATGATGTGGCGGG
CGTCGTACTTCTCATGAATCAGATGCTTCTCAATGCCCACATTCACAACT
GGCGGGGCACATTTCTTCTTGCGTCCCTGCTGCCGGCAATCCTCCTCCGT
AGAGATGCGGTGCTCGCCGAGCCGGATCTCATAAAGATCGTTCTGAAGAC
CGTGGACACAGTGAGCAGCAGTCAGGATGTAGCGCTCGGATATCATAGCT
CCGCCGCAAAGGAATCTGGACTCTCCAAACTGCTGATAACGGAGCAGGGC
CATCCAGGGTCTG

BO15396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5896-PA 1008 CG5896-RA 261..1005 763..19 3725 100 Minus
CG5896-PB 1134 CG5896-RB 387..1131 763..19 3725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1317 CG5896-RB 478..1222 763..19 3725 100 Minus
grass-RA 1391 CG5896-RA 552..1296 763..19 3725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27159265..27159686 440..19 2110 100 Minus
3R 32079331 3R 27159008..27159201 634..441 970 100 Minus
3R 32079331 3R 27158765..27158845 763..683 405 100 Minus
3R 32079331 3R 27158903..27158951 683..635 245 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:41:43 has no hits.

BO15396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:47 Download gff for BO15396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5896-PA 261..1008 16..763 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:30 Download gff for BO15396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5896-PB 387..1134 16..763 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:26 Download gff for BO15396.3prime
Subject Subject Range Query Range Percent Splice Strand
grass-RA 552..1296 19..763 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:25 Download gff for BO15396.3prime
Subject Subject Range Query Range Percent Splice Strand
grass-RA 552..1296 19..763 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:25 Download gff for BO15396.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27158765..27158844 684..763 100 -> Minus
3R 27158903..27158951 635..683 100 -> Minus
3R 27159008..27159201 441..634 100 -> Minus
3R 27159265..27159686 19..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:26 Download gff for BO15396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22984487..22984566 684..763 100 -> Minus
arm_3R 22984625..22984673 635..683 100 -> Minus
arm_3R 22984730..22984923 441..634 100 -> Minus
arm_3R 22984987..22985408 19..440 100   Minus

BO15396.5prime Sequence

835 bp (758 high quality bases) assembled on 2006-06-16

> BO15396.5prime
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTT
GCGTGGGTGGTGGCGACCTGCAGGACTCCTGCAAG

BO15396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5896-PB 1134 CG5896-RB 126..945 16..835 4100 100 Plus
CG5896-PA 1008 CG5896-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1317 CG5896-RB 217..1036 16..835 4100 100 Plus
grass-RA 1391 CG5896-RA 291..1110 16..835 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27159265..27159500 600..835 1180 100 Plus
3R 32079331 3R 27158630..27158845 142..357 1080 100 Plus
3R 32079331 3R 27159008..27159201 406..599 970 100 Plus
3R 32079331 3R 27158238..27158364 16..142 635 100 Plus
3R 32079331 3R 27158903..27158951 357..405 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:47:51 has no hits.

BO15396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:49 Download gff for BO15396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5896-PB 116..945 3..835 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:32 Download gff for BO15396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5896-PB 116..945 3..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:38 Download gff for BO15396.5prime
Subject Subject Range Query Range Percent Splice Strand
grass-RA 281..1110 3..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:34 Download gff for BO15396.5prime
Subject Subject Range Query Range Percent Splice Strand
grass-RA 281..1110 3..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:34 Download gff for BO15396.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27158228..27158364 3..142 96 -> Plus
3R 27158631..27158844 143..356 100 -> Plus
3R 27158903..27158951 357..405 100 -> Plus
3R 27159008..27159201 406..599 100 -> Plus
3R 27159265..27159500 600..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:38 Download gff for BO15396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22983950..22984086 3..142 96 -> Plus
arm_3R 22984353..22984566 143..356 100 -> Plus
arm_3R 22984625..22984673 357..405 100 -> Plus
arm_3R 22984730..22984923 406..599 100 -> Plus
arm_3R 22984987..22985222 600..835 100   Plus

BO15396.complete Sequence

1039 bp assembled on 2007-10-17

GenBank Submission: FJ638739

> BO15396.complete
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTT
GCGTGGGTGGTGGCGACCTGCAGGACTCCTGCAAGGGCGACTCCGGCGGC
CCCCTCCAAGCACCTGCCCAGTACTTGGGCGAGTATGCGCCGAAAATGGT
CGAGTTCGGGATCGTCAGCCAGGGTGTGGTCACCTGCGGGCAGATTAGCC
TGCCCGGTCTGTACACAAATGTGGGCGAGTACGTGCAGTGGATCACGGAC
ACCATGGCCAGCAATGGCCTGGCAAGCTTTCTAGACCAT

BO15396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1134 CG5896-PB 126..1131 16..1021 5030 100 Plus
grass-RA 1008 CG5896-PA 1..1005 17..1021 5025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
grass-RB 1317 CG5896-RB 217..1222 16..1021 5030 100 Plus
grass-RA 1391 CG5896-RA 291..1296 16..1021 5030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27159265..27159686 600..1021 2110 100 Plus
3R 32079331 3R 27158630..27158845 142..357 1080 100 Plus
3R 32079331 3R 27159008..27159201 406..599 970 100 Plus
3R 32079331 3R 27158238..27158364 16..142 635 100 Plus
3R 32079331 3R 27158903..27158951 357..405 245 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:56:02 has no hits.

BO15396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:55 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RB 116..1134 3..1024 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:25 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RB 209..1224 3..1021 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:50 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RA 292..1296 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:07 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RB 220..1224 17..1023 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:04 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
grass-RA 292..1296 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:04 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27158239..27158364 17..142 100 -> Plus
3R 27158631..27158844 143..356 100 -> Plus
3R 27158903..27158951 357..405 100 -> Plus
3R 27159008..27159201 406..599 100 -> Plus
3R 27159265..27159686 600..1023 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:50 Download gff for BO15396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22983961..22984086 17..142 100 -> Plus
arm_3R 22984353..22984566 143..356 100 -> Plus
arm_3R 22984625..22984673 357..405 100 -> Plus
arm_3R 22984730..22984923 406..599 100 -> Plus
arm_3R 22984987..22985408 600..1023 99   Plus

BO15396.pep Sequence

Translation from 16 to 1039

> BO15396.pep
MPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSA
NIQHNSKVMSLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFG
ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQG
RKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPI
CLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQ
AYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIV
SQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGLASFLDH

BO15396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
grass-PA 335 CG5896-PA 1..335 1..335 1786 100 Plus
grass-PB 377 CG5896-PB 43..377 1..335 1786 100 Plus
CG5909-PA 381 CG5909-PA 52..380 20..330 483 33.5 Plus
ea-PA 392 CG4920-PA 72..392 30..332 479 37 Plus
ea-PB 261 CG4920-PB 2..261 82..332 416 38.7 Plus