Clone Sequence Records
BO15396.3prime Sequence
763 bp (762 high quality bases) assembled on 2006-06-16
> BO15396.3prime
ATGGTCTAGAAAGCTTGCCAGGCCATTGCTGGCCATGGTGTCCGTGATCC
ACTGCACGTACTCGCCCACATTTGTGTACAGACCGGGCAGGCTAATCTGC
CCGCAGGTGACCACACCCTGGCTGACGATCCCGAACTCGACCATTTTCGG
CGCATACTCGCCCAAGTACTGGGCAGGTGCTTGGAGGGGGCCGCCGGAGT
CGCCCTTGCAGGAGTCCTGCAGGTCGCCACCACCCACGCAAAGTTGACTG
AGCGGCACTGCCCTGCGGTAGGCCTGGGAACAGGCGGATCGCGGCTGCAG
CGGCACGTTCGCCTGGAGCAACACATCCGACGACGAGCCGTTCTCCGTGG
TGCCCCAGCCGGTCACGAAGTAGGTGCTTATCTGCTCTGCCTTCTCCTTC
AGCTCATCCGTGATGGGCAGGCAAATGGGCTTGATGTGCTTCTGGAAGGG
GACGCTCCTGTTGAGCTTCAGGAGAGCTATGTCATGCATGATGTGGCGGG
CGTCGTACTTCTCATGAATCAGATGCTTCTCAATGCCCACATTCACAACT
GGCGGGGCACATTTCTTCTTGCGTCCCTGCTGCCGGCAATCCTCCTCCGT
AGAGATGCGGTGCTCGCCGAGCCGGATCTCATAAAGATCGTTCTGAAGAC
CGTGGACACAGTGAGCAGCAGTCAGGATGTAGCGCTCGGATATCATAGCT
CCGCCGCAAAGGAATCTGGACTCTCCAAACTGCTGATAACGGAGCAGGGC
CATCCAGGGTCTG
BO15396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5896-PA | 1008 | CG5896-RA | 261..1005 | 763..19 | 3725 | 100 | Minus |
CG5896-PB | 1134 | CG5896-RB | 387..1131 | 763..19 | 3725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1317 | CG5896-RB | 478..1222 | 763..19 | 3725 | 100 | Minus |
grass-RA | 1391 | CG5896-RA | 552..1296 | 763..19 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27159265..27159686 | 440..19 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 27159008..27159201 | 634..441 | 970 | 100 | Minus |
3R | 32079331 | 3R | 27158765..27158845 | 763..683 | 405 | 100 | Minus |
3R | 32079331 | 3R | 27158903..27158951 | 683..635 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:41:43 has no hits.
BO15396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:47 Download gff for
BO15396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5896-PA | 261..1008 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:30 Download gff for
BO15396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5896-PB | 387..1134 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:49:26 Download gff for
BO15396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 552..1296 | 19..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:03:25 Download gff for
BO15396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 552..1296 | 19..763 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:03:25 Download gff for
BO15396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27158765..27158844 | 684..763 | 100 | -> | Minus |
3R | 27158903..27158951 | 635..683 | 100 | -> | Minus |
3R | 27159008..27159201 | 441..634 | 100 | -> | Minus |
3R | 27159265..27159686 | 19..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:49:26 Download gff for
BO15396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22984487..22984566 | 684..763 | 100 | -> | Minus |
arm_3R | 22984625..22984673 | 635..683 | 100 | -> | Minus |
arm_3R | 22984730..22984923 | 441..634 | 100 | -> | Minus |
arm_3R | 22984987..22985408 | 19..440 | 100 | | Minus |
BO15396.5prime Sequence
835 bp (758 high quality bases) assembled on 2006-06-16
> BO15396.5prime
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTT
GCGTGGGTGGTGGCGACCTGCAGGACTCCTGCAAG
BO15396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5896-PB | 1134 | CG5896-RB | 126..945 | 16..835 | 4100 | 100 | Plus |
CG5896-PA | 1008 | CG5896-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1317 | CG5896-RB | 217..1036 | 16..835 | 4100 | 100 | Plus |
grass-RA | 1391 | CG5896-RA | 291..1110 | 16..835 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27159265..27159500 | 600..835 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 27158630..27158845 | 142..357 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 27159008..27159201 | 406..599 | 970 | 100 | Plus |
3R | 32079331 | 3R | 27158238..27158364 | 16..142 | 635 | 100 | Plus |
3R | 32079331 | 3R | 27158903..27158951 | 357..405 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:47:51 has no hits.
BO15396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:49 Download gff for
BO15396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5896-PB | 116..945 | 3..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:32 Download gff for
BO15396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5896-PB | 116..945 | 3..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:38 Download gff for
BO15396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 281..1110 | 3..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:34 Download gff for
BO15396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 281..1110 | 3..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:34 Download gff for
BO15396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27158228..27158364 | 3..142 | 96 | -> | Plus |
3R | 27158631..27158844 | 143..356 | 100 | -> | Plus |
3R | 27158903..27158951 | 357..405 | 100 | -> | Plus |
3R | 27159008..27159201 | 406..599 | 100 | -> | Plus |
3R | 27159265..27159500 | 600..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:38 Download gff for
BO15396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22983950..22984086 | 3..142 | 96 | -> | Plus |
arm_3R | 22984353..22984566 | 143..356 | 100 | -> | Plus |
arm_3R | 22984625..22984673 | 357..405 | 100 | -> | Plus |
arm_3R | 22984730..22984923 | 406..599 | 100 | -> | Plus |
arm_3R | 22984987..22985222 | 600..835 | 100 | | Plus |
BO15396.complete Sequence
1039 bp assembled on 2007-10-17
GenBank Submission: FJ638739
> BO15396.complete
GAAGTTATCAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGC
GCCTGACGGAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCC
AGTTACCTGCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTT
CTGCTGCCCCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGT
TCAAGGACGAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCC
AATGGCTACGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCG
TTATCAGCAGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATAT
CCGAGCGCTACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAAC
GATCTTTATGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGA
TTGCCGGCAGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATG
TGGGCATTGAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATC
ATGCATGACATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAA
GCACATCAAGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGG
CAGAGCAGATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAAC
GGCTCGTCGTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCG
ATCCGCCTGTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTT
GCGTGGGTGGTGGCGACCTGCAGGACTCCTGCAAGGGCGACTCCGGCGGC
CCCCTCCAAGCACCTGCCCAGTACTTGGGCGAGTATGCGCCGAAAATGGT
CGAGTTCGGGATCGTCAGCCAGGGTGTGGTCACCTGCGGGCAGATTAGCC
TGCCCGGTCTGTACACAAATGTGGGCGAGTACGTGCAGTGGATCACGGAC
ACCATGGCCAGCAATGGCCTGGCAAGCTTTCTAGACCAT
BO15396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1134 | CG5896-PB | 126..1131 | 16..1021 | 5030 | 100 | Plus |
grass-RA | 1008 | CG5896-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-RB | 1317 | CG5896-RB | 217..1222 | 16..1021 | 5030 | 100 | Plus |
grass-RA | 1391 | CG5896-RA | 291..1296 | 16..1021 | 5030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27159265..27159686 | 600..1021 | 2110 | 100 | Plus |
3R | 32079331 | 3R | 27158630..27158845 | 142..357 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 27159008..27159201 | 406..599 | 970 | 100 | Plus |
3R | 32079331 | 3R | 27158238..27158364 | 16..142 | 635 | 100 | Plus |
3R | 32079331 | 3R | 27158903..27158951 | 357..405 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:56:02 has no hits.
BO15396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:55 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RB | 116..1134 | 3..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:25 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RB | 209..1224 | 3..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:50 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 292..1296 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:07 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RB | 220..1224 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:04 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grass-RA | 292..1296 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:04 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27158239..27158364 | 17..142 | 100 | -> | Plus |
3R | 27158631..27158844 | 143..356 | 100 | -> | Plus |
3R | 27158903..27158951 | 357..405 | 100 | -> | Plus |
3R | 27159008..27159201 | 406..599 | 100 | -> | Plus |
3R | 27159265..27159686 | 600..1023 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:50 Download gff for
BO15396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22983961..22984086 | 17..142 | 100 | -> | Plus |
arm_3R | 22984353..22984566 | 143..356 | 100 | -> | Plus |
arm_3R | 22984625..22984673 | 357..405 | 100 | -> | Plus |
arm_3R | 22984730..22984923 | 406..599 | 100 | -> | Plus |
arm_3R | 22984987..22985408 | 600..1023 | 99 | | Plus |
BO15396.pep Sequence
Translation from 16 to 1039
> BO15396.pep
MPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSA
NIQHNSKVMSLFKDENFDCGNFLSQRVSNGYEVKLSSRPWMALLRYQQFG
ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQG
RKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPI
CLPITDELKEKAEQISTYFVTGWGTTENGSSSDVLLQANVPLQPRSACSQ
AYRRAVPLSQLCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIV
SQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGLASFLDH
BO15396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grass-PA | 335 | CG5896-PA | 1..335 | 1..335 | 1786 | 100 | Plus |
grass-PB | 377 | CG5896-PB | 43..377 | 1..335 | 1786 | 100 | Plus |
CG5909-PA | 381 | CG5909-PA | 52..380 | 20..330 | 483 | 33.5 | Plus |
ea-PA | 392 | CG4920-PA | 72..392 | 30..332 | 479 | 37 | Plus |
ea-PB | 261 | CG4920-PB | 2..261 | 82..332 | 416 | 38.7 | Plus |