Clone Sequence Records
BO15401.3prime Sequence
320 bp (319 high quality bases) assembled on 2006-05-29
> BO15401.3prime
ATGGTCTAGAAAGCTTGCACCGCAGAGATTCGCGATGGCCTGAGCCGCAT
TAGCGGCTGCCACCTGTGGAGCGTCCTCTGCCGGAATGCGTTTGCGTCGG
AATAGAATCACATGCGGCTCCGGCGCGTGGACCATGTAGTGCACCCAGCC
GGGGCTCTGCTGCACGCCCAGGTTGCGCCACTCCGTCTCGGTCATCAGAT
GAGCCTTCGGCACATGTTTGGCCAAATCCGGTGGCAAGATAACATGCCTG
TATTCAAAGTTGTCGTCGAAGTACTTCTCTGAGTATTGAATTTGATCGGC
CGGCATGTCGACTGATAACT
BO15401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9790-PA | 291 | Cks85A-RA | 1..288 | 306..19 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..370 | 306..19 | 1440 | 100 | Minus |
| Cks85A-RB | 666 | CG9790-RB | 139..426 | 306..19 | 1440 | 100 | Minus |
| Cks85A-RA | 610 | CG9790-RA | 83..370 | 306..19 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715440..8715671 | 19..250 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 8715738..8715797 | 247..306 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:42:24 has no hits.
BO15401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:50 Download gff for
BO15401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 18..306 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:34 Download gff for
BO15401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 18..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:42:26 Download gff for
BO15401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 13..315 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:50:20 Download gff for
BO15401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 13..315 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:50:20 Download gff for
BO15401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715435..8715668 | 13..247 | 98 | <- | Plus |
| 3R | 8715739..8715802 | 248..315 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:42:26 Download gff for
BO15401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541157..4541390 | 13..247 | 98 | <- | Plus |
| arm_3R | 4541461..4541524 | 248..315 | 94 | | Plus |
BO15401.5prime Sequence
320 bp (319 high quality bases) assembled on 2006-05-29
> BO15401.5prime
GAAGTTATCAGTCGACATGCCGGCCGATCAAATTCAATACTCAGAGAAGT
ACTTCGACGACAACTTTGAATACAGGCATGTTATCTTGCCACCGGATTTG
GCCAAACATGTGCCGAAGGCTCATCTGATGACCGAGACGGAGTGGCGCAA
CCTGGGCGTGCAGCAGAGCCCCGGCTGGGTGCACTACATGGTCCACGCGC
CGGAGCCGCATGTGATTCTATTCCGACGCAAACGCATTCCGGCAGAGGAC
GCTCCACAGGTGGCAGCCGCTAATGCGGCTCAGGCCATCGCGAATCTCTG
CGGTGCAAGCTTTCTAGACC
BO15401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9790-PA | 291 | Cks85A-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..370 | 17..304 | 1440 | 100 | Plus |
| Cks85A-RB | 666 | CG9790-RB | 139..426 | 17..304 | 1440 | 100 | Plus |
| Cks85A-RA | 610 | CG9790-RA | 83..370 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715440..8715671 | 304..73 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 8715738..8715797 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:27:00 has no hits.
BO15401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:51 Download gff for
BO15401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:35 Download gff for
BO15401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9790-PA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:21 Download gff for
BO15401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 8..310 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:01 Download gff for
BO15401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 8..310 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:01 Download gff for
BO15401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715435..8715668 | 76..310 | 98 | <- | Minus |
| 3R | 8715739..8715802 | 8..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:21 Download gff for
BO15401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541157..4541390 | 76..310 | 98 | <- | Minus |
| arm_3R | 4541461..4541524 | 8..75 | 94 | | Minus |
BO15401.complete Sequence
322 bp (322 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633444
> BO15401.complete
GAAGTTATCAGTCGACATGCCGGCCGATCAAATTCAATACTCAGAGAAGT
ACTTCGACGACAACTTTGAATACAGGCATGTTATCTTGCCACCGGATTTG
GCCAAACATGTGCCGAAGGCTCATCTGATGACCGAGACGGAGTGGCGCAA
CCTGGGCGTGCAGCAGAGCCCCGGCTGGGTGCACTACATGGTCCACGCGC
CGGAGCCGCATGTGATTCTATTCCGACGCAAACGCATTCCGGCAGAGGAC
GCTCCACAGGTGGCAGCCGCTAATGCGGCTCAGGCCATCGCGAATCTCTG
CGGTGCAAGCTTTCTAGACCAT
BO15401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 291 | CG9790-PC | 1..288 | 17..304 | 1440 | 100 | Plus |
| Cks85A-RB | 291 | CG9790-PB | 1..288 | 17..304 | 1440 | 100 | Plus |
| Cks85A-RA | 291 | CG9790-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..370 | 17..304 | 1440 | 100 | Plus |
| Cks85A-RB | 666 | CG9790-RB | 139..426 | 17..304 | 1440 | 100 | Plus |
| Cks85A-RA | 610 | CG9790-RA | 83..370 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715440..8715671 | 304..73 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 8715738..8715797 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:17:44 has no hits.
BO15401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:52 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:11 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 55..352 | 8..310 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:24 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 83..370 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:52 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 55..352 | 8..310 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:55 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 83..370 | 17..306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:55 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715438..8715668 | 76..306 | 99 | <- | Minus |
| 3R | 8715739..8715797 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:24 Download gff for
BO15401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541461..4541519 | 17..75 | 100 | | Minus |
| arm_3R | 4541160..4541390 | 76..306 | 99 | <- | Minus |
BO15401.pep Sequence
Translation from 16 to 322
> BO15401.pep
MPADQIQYSEKYFDDNFEYRHVILPPDLAKHVPKAHLMTETEWRNLGVQQ
SPGWVHYMVHAPEPHVILFRRKRIPAEDAPQVAAANAAQAIANLCGASFL
DH
BO15401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-PC | 96 | CG9790-PC | 1..96 | 1..96 | 522 | 100 | Plus |
| Cks85A-PB | 96 | CG9790-PB | 1..96 | 1..96 | 522 | 100 | Plus |
| Cks85A-PA | 96 | CG9790-PA | 1..96 | 1..96 | 522 | 100 | Plus |
| Cks30A-PA | 74 | CG3738-PA | 5..72 | 6..73 | 288 | 67.6 | Plus |
