Clone BO15402 Report

Search the DGRC for BO15402

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL36-RA
Protein status:BO15402.pep: validated full length
Sequenced Size:418

Clone Sequence Records

BO15402.3prime Sequence

416 bp (415 high quality bases) assembled on 2006-05-29

> BO15402.3prime
ATGGTCTAGAAAGCTTGCATAGCCGCGCTCCTTGGATTGGGTGGCGTGCG
TCAGGATCCACGACTTGTAGTCGCGCTTCTTCATCGACATCTGCTTGTGG
CGTGGATGCGTGGGGCAGATGACATAACCGCGCTCCTGGCGCACCACGAT
GTAGCAGTCCTTGCAGCGTCGCTTCAGGCGTCCCTTGACCTTGAATCCCG
CCACCTGCTGGACCAAAGTGGAGCCAGGCGTCAGCAGACCCGACGTCTGA
CAGATTCCAGTTGTGGCGGCCACAAGTTGCGAGCTTTGAATTGATACAAT
TGCAGGAGCCGCCGGCCGGGTGAGAAGGTGGAAACCACGCGCGGCACTGA
GACCATTCCACAAGCGGGAACCTTGTTGCAGTATTCTACTAGCCAGGGAC
ATGTCGACTGATAACT

BO15402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18767-PA 387 mRpL36-RA 1..384 402..19 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL36-RA 495 CG18767-RA 41..424 402..19 1920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8124655..8125038 19..402 1920 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:41:55 has no hits.

BO15402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:52 Download gff for BO15402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18767-PA 1..387 18..402 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:37 Download gff for BO15402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18767-PA 1..387 18..402 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:12 Download gff for BO15402.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 41..424 19..402 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:08 Download gff for BO15402.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 41..424 19..402 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:08 Download gff for BO15402.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8124655..8125042 19..407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:12 Download gff for BO15402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8117755..8118142 19..407 99   Plus

BO15402.5prime Sequence

416 bp (415 high quality bases) assembled on 2006-05-29

> BO15402.5prime
GAAGTTATCAGTCGACATGTCCCTGGCTAGTAGAATACTGCAACAAGGTT
CCCGCTTGTGGAATGGTCTCAGTGCCGCGCGTGGTTTCCACCTTCTCACC
CGGCCGGCGGCTCCTGCAATTGTATCAATTCAAAGCTCGCAACTTGTGGC
CGCCACAACTGGAATCTGTCAGACGTCGGGTCTGCTGACGCCTGGCTCCA
CTTTGGTCCAGCAGGTGGCGGGATTCAAGGTCAAGGGACGCCTGAAGCGA
CGCTGCAAGGACTGCTACATCGTGGTGCGCCAGGAGCGCGGTTATGTCAT
CTGCCCCACGCATCCACGCCACAAGCAGATGTCGATGAAGAAGCGCGACT
ACAAGTCGTGGATCCTGACGCACGCCACCCAATCCAAGGAGCGCGGCTAT
GCAAGCTTTCTAGACC

BO15402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18767-PA 387 mRpL36-RA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL36-RA 495 CG18767-RA 41..424 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8124655..8125038 400..17 1920 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:07:22 has no hits.

BO15402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:53 Download gff for BO15402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18767-PA 1..387 17..401 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:39 Download gff for BO15402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18767-PA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:08 Download gff for BO15402.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 41..424 17..400 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:44 Download gff for BO15402.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 41..424 17..400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:44 Download gff for BO15402.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8124655..8125042 12..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:08 Download gff for BO15402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8117755..8118142 12..400 99   Minus

BO15402.complete Sequence

418 bp (418 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633445

> BO15402.complete
GAAGTTATCAGTCGACATGTCCCTGGCTAGTAGAATACTGCAACAAGGTT
CCCGCTTGTGGAATGGTCTCAGTGCCGCGCGTGGTTTCCACCTTCTCACC
CGGCCGGCGGCTCCTGCAATTGTATCAATTCAAAGCTCGCAACTTGTGGC
CGCCACAACTGGAATCTGTCAGACGTCGGGTCTGCTGACGCCTGGCTCCA
CTTTGGTCCAGCAGGTGGCGGGATTCAAGGTCAAGGGACGCCTGAAGCGA
CGCTGCAAGGACTGCTACATCGTGGTGCGCCAGGAGCGCGGTTATGTCAT
CTGCCCCACGCATCCACGCCACAAGCAGATGTCGATGAAGAAGCGCGACT
ACAAGTCGTGGATCCTGACGCACGCCACCCAATCCAAGGAGCGCGGCTAT
GCAAGCTTTCTAGACCAT

BO15402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL36-RA 387 CG18767-PA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL36-RA 495 CG18767-RA 41..424 17..400 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8124655..8125038 400..17 1920 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:49:08 has no hits.

BO15402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:53 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:55 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 22..405 17..400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:33 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 41..424 17..402 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:53 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 22..405 17..400 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:19 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL36-RA 41..424 17..402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:19 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8124653..8125038 17..402 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:33 Download gff for BO15402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8117753..8118138 17..402 99   Minus

BO15402.pep Sequence

Translation from 16 to 418

> BO15402.pep
MSLASRILQQGSRLWNGLSAARGFHLLTRPAAPAIVSIQSSQLVAATTGI
CQTSGLLTPGSTLVQQVAGFKVKGRLKRRCKDCYIVVRQERGYVICPTHP
RHKQMSMKKRDYKSWILTHATQSKERGYASFLDH

BO15402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL36-PA 128 CG18767-PA 1..128 1..128 664 100 Plus