Clone Sequence Records
BO15402.3prime Sequence
416 bp (415 high quality bases) assembled on 2006-05-29
> BO15402.3prime
ATGGTCTAGAAAGCTTGCATAGCCGCGCTCCTTGGATTGGGTGGCGTGCG
TCAGGATCCACGACTTGTAGTCGCGCTTCTTCATCGACATCTGCTTGTGG
CGTGGATGCGTGGGGCAGATGACATAACCGCGCTCCTGGCGCACCACGAT
GTAGCAGTCCTTGCAGCGTCGCTTCAGGCGTCCCTTGACCTTGAATCCCG
CCACCTGCTGGACCAAAGTGGAGCCAGGCGTCAGCAGACCCGACGTCTGA
CAGATTCCAGTTGTGGCGGCCACAAGTTGCGAGCTTTGAATTGATACAAT
TGCAGGAGCCGCCGGCCGGGTGAGAAGGTGGAAACCACGCGCGGCACTGA
GACCATTCCACAAGCGGGAACCTTGTTGCAGTATTCTACTAGCCAGGGAC
ATGTCGACTGATAACT
BO15402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18767-PA | 387 | mRpL36-RA | 1..384 | 402..19 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL36-RA | 495 | CG18767-RA | 41..424 | 402..19 | 1920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8124655..8125038 | 19..402 | 1920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:41:55 has no hits.
BO15402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:52 Download gff for
BO15402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18767-PA | 1..387 | 18..402 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:37 Download gff for
BO15402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18767-PA | 1..387 | 18..402 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:12 Download gff for
BO15402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 41..424 | 19..402 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:08 Download gff for
BO15402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 41..424 | 19..402 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:08 Download gff for
BO15402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8124655..8125042 | 19..407 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:12 Download gff for
BO15402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8117755..8118142 | 19..407 | 99 | | Plus |
BO15402.5prime Sequence
416 bp (415 high quality bases) assembled on 2006-05-29
> BO15402.5prime
GAAGTTATCAGTCGACATGTCCCTGGCTAGTAGAATACTGCAACAAGGTT
CCCGCTTGTGGAATGGTCTCAGTGCCGCGCGTGGTTTCCACCTTCTCACC
CGGCCGGCGGCTCCTGCAATTGTATCAATTCAAAGCTCGCAACTTGTGGC
CGCCACAACTGGAATCTGTCAGACGTCGGGTCTGCTGACGCCTGGCTCCA
CTTTGGTCCAGCAGGTGGCGGGATTCAAGGTCAAGGGACGCCTGAAGCGA
CGCTGCAAGGACTGCTACATCGTGGTGCGCCAGGAGCGCGGTTATGTCAT
CTGCCCCACGCATCCACGCCACAAGCAGATGTCGATGAAGAAGCGCGACT
ACAAGTCGTGGATCCTGACGCACGCCACCCAATCCAAGGAGCGCGGCTAT
GCAAGCTTTCTAGACC
BO15402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18767-PA | 387 | mRpL36-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL36-RA | 495 | CG18767-RA | 41..424 | 17..400 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8124655..8125038 | 400..17 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:07:22 has no hits.
BO15402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:53 Download gff for
BO15402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18767-PA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:39 Download gff for
BO15402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18767-PA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:35:08 Download gff for
BO15402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 41..424 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:44 Download gff for
BO15402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 41..424 | 17..400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:44 Download gff for
BO15402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8124655..8125042 | 12..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:35:08 Download gff for
BO15402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8117755..8118142 | 12..400 | 99 | | Minus |
BO15402.complete Sequence
418 bp (418 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633445
> BO15402.complete
GAAGTTATCAGTCGACATGTCCCTGGCTAGTAGAATACTGCAACAAGGTT
CCCGCTTGTGGAATGGTCTCAGTGCCGCGCGTGGTTTCCACCTTCTCACC
CGGCCGGCGGCTCCTGCAATTGTATCAATTCAAAGCTCGCAACTTGTGGC
CGCCACAACTGGAATCTGTCAGACGTCGGGTCTGCTGACGCCTGGCTCCA
CTTTGGTCCAGCAGGTGGCGGGATTCAAGGTCAAGGGACGCCTGAAGCGA
CGCTGCAAGGACTGCTACATCGTGGTGCGCCAGGAGCGCGGTTATGTCAT
CTGCCCCACGCATCCACGCCACAAGCAGATGTCGATGAAGAAGCGCGACT
ACAAGTCGTGGATCCTGACGCACGCCACCCAATCCAAGGAGCGCGGCTAT
GCAAGCTTTCTAGACCAT
BO15402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL36-RA | 387 | CG18767-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL36-RA | 495 | CG18767-RA | 41..424 | 17..400 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8124655..8125038 | 400..17 | 1920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:08 has no hits.
BO15402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:53 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:55 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 22..405 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:33 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 41..424 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:53 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 22..405 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:19 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL36-RA | 41..424 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:19 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8124653..8125038 | 17..402 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:33 Download gff for
BO15402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8117753..8118138 | 17..402 | 99 | | Minus |
BO15402.pep Sequence
Translation from 16 to 418
> BO15402.pep
MSLASRILQQGSRLWNGLSAARGFHLLTRPAAPAIVSIQSSQLVAATTGI
CQTSGLLTPGSTLVQQVAGFKVKGRLKRRCKDCYIVVRQERGYVICPTHP
RHKQMSMKKRDYKSWILTHATQSKERGYASFLDH
BO15402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL36-PA | 128 | CG18767-PA | 1..128 | 1..128 | 664 | 100 | Plus |