Clone Sequence Records
BO15403.3prime Sequence
836 bp (793 high quality bases) assembled on 2006-05-29
> BO15403.3prime
ATGGTCTAGAAAGCTTGCCGATCTCTTTGGCTTCTTGCCAACTTTCTTGT
GGGCCAACTTCGATGGATTCCGTTTGCACAGATAGCATAGGACTAGGATC
AGTAAAATTAAAGGTAACAGGATCAGGGCTACACTATCCAGTGAATGGTA
GACAAATCCATTCAGTTCTATGCCTGGAGATTGAAGTAGTCTGGCGGCAA
TCAATCCATTGCTAATGACGTGTTCCACAGACCAAATGGCTGATTCCAGA
GGCGTCTGCTGACGCTCATTGAACACCTTGGAGACCTCAAGAGATCGTTG
GGCATAGCTGTTTTTGCTGAGCTCTGCAAGAGCTTTCTTTAGGTTTGGTA
CAGTGATGTCTTGGTAGTCCAACTTCAGACCCATTCCCCGATTTTGCACC
GAGAATGCATTAAGGAATTGATCTCCGTAGATTGGGGTGACTAGTAGGGG
TTTGCCACAATGCACCGATTCAGTGGTTCCAAGTAAGCCGCCATGGGACC
AAAACAACTTTACTTTTGGGTGACATAGAAGCGCCAATTGGGGAGCCCAT
TTGACGAAGAGAAACTTGGAGGCATCTGTATCGGGAGTCTCATCCGCCTC
CCATTTCCAGATGATCTTCAAGGGCTGGCTTTTTAGAACTTCTAGTATGG
CTGACAGTTTATCTTCGTCAATACTTGAAGCCCGCACCATTGAACCCCAG
CTTATGAAGATCACACCCTCTGCTGATTGGTTAAGGAAATTGGCGATATT
CTGGGGTAACTCCTGCTCCGCTTTCTTGGTGATATGTACTCCTCCGATTT
CCCACAATTGCAGTGATTGTGGACGACTTCCCATCA
BO15403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2788-PA | 1482 | Dot-RA | 696..1479 | 802..19 | 3920 | 100 | Minus |
CG2788-PA | 1482 | Dot-RA | 662..692 | 836..806 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dot-RB | 2303 | CG2788-RB | 983..1800 | 836..19 | 4045 | 99.8 | Minus |
Dot-RA | 1720 | CG2788-RA | 802..1619 | 836..19 | 4045 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3620079..3620392 | 836..523 | 1525 | 99 | Minus |
2L | 23513712 | 2L | 3620779..3621070 | 310..19 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 3620509..3620725 | 524..308 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:47:58 has no hits.
BO15403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:54 Download gff for
BO15403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-PA | 663..1482 | 18..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:40 Download gff for
BO15403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2788-PA | 663..1482 | 18..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:29 Download gff for
BO15403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 803..1619 | 19..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:23 Download gff for
BO15403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 803..1619 | 19..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:23 Download gff for
BO15403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3620080..3620390 | 525..835 | 99 | -> | Minus |
2L | 3620509..3620725 | 308..524 | 100 | -> | Minus |
2L | 3620782..3621070 | 19..307 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:29 Download gff for
BO15403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3620080..3620390 | 525..835 | 99 | -> | Minus |
arm_2L | 3620509..3620725 | 308..524 | 100 | -> | Minus |
arm_2L | 3620782..3621070 | 19..307 | 100 | | Minus |
BO15403.5prime Sequence
779 bp (778 high quality bases) assembled on 2006-05-29
> BO15403.5prime
GAAGTTATCAGTCGACATGCCCATCCTGAACGAGCTGGCGCATCGTGGTC
ATGACATCACGGTAATCTCGTACGTTAAGAACCCCCAAGCCGGAGCCTAT
CCCAACTATGAGGAGCTACTGATTTCGGCTCCCGGTGAGGATCAGTCGAG
CACCACGATCAACTTGGTTCCCCTGACGGAGCACACACCCACCAGATCCC
TGGGAGTCCTCATCCGTGAGTATGTAGATCTGCACGAAGAGGGCCAGAAG
ACCTGCGAGCACCTCTTCGCCAGTGGCCACATAGAACGGGCCATCGAACG
ACATCGAAATAAGCCCTACGATCTGCTACTCACGGAATACTTCAACTCCG
ATTGCCAACTGGCCTTGGCCAAGTTATTAAATCTGCCAATTATAGGCTTA
AGTACCTGCGCGCTGATGCCCTACTATTACGATCGCATCGATTTGCCCGA
CACACCTGCCTTCATACAGTCGGAATTCGTGGGTTTCGCTGGCCAACTGA
ACTGGCACGAACGGCTGCTCAACTTTGTTCAGGCCAAGTTATTAAAGTTT
CTGTACAAGTACCATTCCAACAGGGCTGACAACGAGTTGGTACGGAAGTA
TCTTGGAGTGGAAGTAGACGTAGAAGAAGTAGCTCGAACTCAAACTGCTT
TTATATTTGGAAACCAACATTACTCCCTGATGGGAAGTCGTCCACAATCA
CTGCAATTTGTGGAAATCGGAGGAGTACATATCACCAAGAAAGCGGAGCA
GGAGTTACCCCAGAATATCGCCAATTTCC
BO15403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2788-PA | 1482 | Dot-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dot-RB | 2303 | CG2788-RB | 322..1084 | 17..779 | 3815 | 100 | Plus |
Dot-RA | 1720 | CG2788-RA | 141..903 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3619418..3620180 | 17..779 | 3815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:57:15 has no hits.
BO15403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:55 Download gff for
BO15403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:41 Download gff for
BO15403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2788-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:18 Download gff for
BO15403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 135..903 | 11..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:31 Download gff for
BO15403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 135..903 | 11..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:31 Download gff for
BO15403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3619412..3620180 | 11..779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:18 Download gff for
BO15403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3619412..3620180 | 11..779 | 99 | | Plus |
BO15403.complete Sequence
1513 bp (1513 high quality bases) assembled on 2006-08-25
GenBank Submission: FJ633446
> BO15403.complete
GAAGTTATCAGTCGACATGCCCATCCTGAACGAGCTGGCGCATCGTGGTC
ATGACATCACGGTAATCTCGTACGTTAAGAACCCCCAAGCCGGAGCCTAT
CCCAACTATGAGGAGCTACTGATTTCGGCTCCCGGTGAGGATCAGTCGAG
CACCACGATCAACTTGGTTCCCCTGACGGAGCACACACCCACCAGATCCC
TGGGAGTCCTCATCCGTGAGTATGTAGATCTGCACGAAGAGGGCCAGAAG
ACCTGCGAGCACCTCTTCGCCAGTGGCCACATAGAACGGGCCATCGAACG
ACATCGAAATAAGCCCTACGATCTGCTACTCACGGAATACTTCAACTCCG
ATTGCCAACTGGCCTTGGCCAAGTTATTAAATCTGCCAATTATAGGCTTA
AGTACCTGCGCGCTGATGCCCTACTATTACGATCGCATCGATTTGCCCGA
CACACCTGCCTTCATACAGTCGGAATTCGTGGGTTTCGCTGGCCAACTGA
ACTGGCACGAACGGCTGCTCAACTTTGTTCAGGCCAAGTTATTAAAGTTT
CTGTACAAGTACCATTCCAACAGGGCTGACAACGAGTTGGTACGGAAGTA
TCTTGGAGTGGAAGTAGACGTAGAAGAAGTAGCTCGAACTCAAACTGCTT
TTATATTTGGAAACCAACATTACTCCCTGATGGGAAGTCGTCCACAATCA
CTGCAATTTGTGGAAATCGGAGGAGTACATATCACCAAGAAAGCGGAGCA
GGAGTTACCCCAGAATATCGCCAATTTCCTTAACCAATCAGCAGAGGGTG
TGATCTTCATAAGCTGGGGTTCAATGGTGCGGGCTTCAAGTATTGACGAA
GATAAACTGTCAGCCATACTAGAAGTTCTAAAAAGCCAGCCCTTGAAGAT
CATCTGGAAATGGGAGGCGGATGAGACTCCCGATACAGATGCCTCCAAGT
TTCTCTTCGTCAAATGGGCTCCCCAATTGGCGCTTCTATGTCACCCAAAA
GTAAAGTTGTTTTGGTCCCATGGCGGCTTACTTGGAACCACTGAATCGGT
GCATTGTGGCAAACCCCTACTAGTCACCCCAATCTACGGAGATCAATTCC
TTAATGCATTCTCGGTGCAAAATCGGGGAATGGGTCTGAAGTTGGACTAC
CAAGACATCACTGTACCAAACCTAAAGAAAGCTCTTGCAGAGCTCAGCAA
AAACAGCTATGCCCAACGATCTCTTGAGGTCTCCAAGGTGTTCAATGAGC
GTCAGCAGACGCCTCTGGAATCAGCCATTTGGTCTGTGGAACACGTCATT
AGCAATGGATTGATTGCCGCCAGACTACTTCAATCTCCAGGCATAGAACT
GAATGGATTTGTCTACCATTCACTGGATAGTGTAGCCCTGATCCTGTTAC
CTTTAATTTTACTGATCCTAGTCCTATGCTATCTGTGCAAACGGAATCCA
TCGAAGTTGGCCCACAAGAAAGTTGGCAAGAAGCCAAAGAGATCGGCAAG
CTTTCTAGACCAT
BO15403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dot-RB | 1614 | CG2788-PB | 133..1611 | 17..1495 | 7395 | 100 | Plus |
Dot-RA | 1614 | CG2788-PA | 133..1611 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dot-RB | 2303 | CG2788-RB | 322..1800 | 17..1495 | 7395 | 100 | Plus |
Dot-RA | 1720 | CG2788-RA | 141..1619 | 17..1495 | 7395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3619418..3620392 | 17..991 | 4875 | 100 | Plus |
2L | 23513712 | 2L | 3620779..3621070 | 1204..1495 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 3620509..3620725 | 990..1206 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:03:55 has no hits.
BO15403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:25 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 127..1614 | 11..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:00 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 222..1706 | 11..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:41 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 141..1619 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:26 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 222..1706 | 11..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:54 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dot-RA | 141..1619 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:54 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3619418..3620390 | 17..989 | 100 | -> | Plus |
2L | 3620509..3620725 | 990..1206 | 100 | -> | Plus |
2L | 3620782..3621070 | 1207..1497 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:41 Download gff for
BO15403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3619418..3620390 | 17..989 | 100 | -> | Plus |
arm_2L | 3620509..3620725 | 990..1206 | 100 | -> | Plus |
arm_2L | 3620782..3621070 | 1207..1497 | 99 | | Plus |
BO15403.pep Sequence
Translation from 16 to 1513
> BO15403.pep
MPILNELAHRGHDITVISYVKNPQAGAYPNYEELLISAPGEDQSSTTINL
VPLTEHTPTRSLGVLIREYVDLHEEGQKTCEHLFASGHIERAIERHRNKP
YDLLLTEYFNSDCQLALAKLLNLPIIGLSTCALMPYYYDRIDLPDTPAFI
QSEFVGFAGQLNWHERLLNFVQAKLLKFLYKYHSNRADNELVRKYLGVEV
DVEEVARTQTAFIFGNQHYSLMGSRPQSLQFVEIGGVHITKKAEQELPQN
IANFLNQSAEGVIFISWGSMVRASSIDEDKLSAILEVLKSQPLKIIWKWE
ADETPDTDASKFLFVKWAPQLALLCHPKVKLFWSHGGLLGTTESVHCGKP
LLVTPIYGDQFLNAFSVQNRGMGLKLDYQDITVPNLKKALAELSKNSYAQ
RSLEVSKVFNERQQTPLESAIWSVEHVISNGLIAARLLQSPGIELNGFVY
HSLDSVALILLPLILLILVLCYLCKRNPSKLAHKKVGKKPKRSASFLDH
BO15403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dot-PB | 537 | CG2788-PB | 45..537 | 1..493 | 2560 | 100 | Plus |
Dot-PA | 537 | CG2788-PA | 45..537 | 1..493 | 2560 | 100 | Plus |
CG17323-PD | 519 | CG17323-PD | 47..518 | 2..488 | 749 | 34.1 | Plus |
CG17323-PC | 519 | CG17323-PC | 47..518 | 2..488 | 749 | 34.1 | Plus |
CG17323-PE | 519 | CG17323-PE | 47..518 | 2..488 | 749 | 34.1 | Plus |