Clone Sequence Records
BO15404.3prime Sequence
795 bp (762 high quality bases) assembled on 2006-05-29
> BO15404.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTGGAATGATGCATTGATCGCCTGCA
TCTCTGCGGCGGTGAACTGGAGCACCGCCGAGATGGCGTTCAGCATGTGA
CGCTTGCCGTCCGCGTCCCGGGTAACAATGTAGCTGATAATAACGTTCTT
CAGGTACTCCAGATTGGCACCCTCGCGCGTCTTGCAACGTTCGAGTCTGT
CCACCTGCTCCTTGAGGCACTCGATCTTCTCGTGCATTTCCTGCTGAGAT
GTCACCTTGTCCTGGATCGCCTTTCGCAGCGTCGACTCGGCGGCGTATTT
GGCTTTCCGCAGTGTCGTGATTTCGATGTCCTTGCGCGCCAACTCGTTGG
CATAGTGCAGCATGTGGCAGTTCTCGCCCATCGACATTTTCTTGGAGCGC
ACCTTTAGCTTTCTTTCCCGCTGCTCCCCCTCCACGCTGTCGGTGTCGGA
GGAATAGTGAAAGGAATCGGCAGCTGCTTCAAGTGTGGGTGTGGCCAGTG
TGCTGCCCACACCGCTGGCCGAGTGAAAGACCTCGAAGGAGGTCTGCAGT
GTCTTAATCTCCTGCTCCTTCTCATCCAGCAGCTGCAGTGACCTCTGGCG
CTGCTTCTGCAGTAGCTGTTCCAGCTCGTTCAGTTTGCAGCGCGTCTCGT
TCTCCAGTTCAGCCTTGGCTTCCTGCCACTTGGTTCGTTCGTTCTTCAAT
GCCAGGCGCAGCTTTTCGCCCTGCTGCTTTAGTTCGACTTCCGCCTCGTC
GATGTTGCGATTGACCACCTGCACCTTCTCCTGCAGCGTTTGGAT
BO15404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10703-PA | 2088 | CG10703-RA | 1309..2085 | 795..19 | 3860 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 1460..2236 | 795..19 | 3870 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11228490..11229088 | 197..795 | 2980 | 99.8 | Plus |
| 3R | 32079331 | 3R | 11228244..11228423 | 19..198 | 900 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 11:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4409..4513 | 782..677 | 148 | 64.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1141 | 635..559 | 133 | 63.6 | Minus |
BO15404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:56 Download gff for
BO15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1309..2088 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:42 Download gff for
BO15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1309..2088 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:48:54 Download gff for
BO15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 1460..2244 | 9..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:31:50 Download gff for
BO15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 1460..2244 | 9..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:31:50 Download gff for
BO15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11228236..11228421 | 9..196 | 97 | <- | Plus |
| 3R | 11228490..11229088 | 197..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:48:54 Download gff for
BO15404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7053958..7054143 | 9..196 | 97 | <- | Plus |
| arm_3R | 7054212..7054810 | 197..795 | 99 | | Plus |
BO15404.5prime Sequence
887 bp (821 high quality bases) assembled on 2006-05-29
> BO15404.5prime
GAAGTTATCAGTCGACATGGAGAAGCGACAGAGGGAGCTGGAGGCGCTGG
TGTCCACCCAAAAGGAGCAACTGGGGCGCTATGAAAAGCGTCTAAAAGAC
GTGGTCACTGCCTACAAGGGTCTGCTTAAGGAGAAGGAGGCATTGGAGAC
GAGTCTGGCGGCGCATGCGGAGGCCACGGCGGTGGGCGAGTCCGGATCGC
CGGCCAGGGAGTTGGAGTCCAAAAAAACCAGCACCGACTCTGCGGATGGA
GCAACCGAGGGCGCTGCACCGGGTCCGCCTGCTCCCCCGGCCGAGGGTCA
ACTGCAGACCCAAATTATCACCCTGATGAACTCGCTGGCCACTCTTTCCG
CTGAGAAATCCCGCATGGAGGCCTCCTTTCAGGCGGATAAAAAGCAACTG
CGCAGCCAAATCGCCCAAAAGGAGCAGACCATTCAGGAGCTTAATACCCG
GGCCAAGGAGCAGGCTGCTCGGGCCAAAAGCGACGTGGACGAGATCAAGG
CCAAGTGGATCGTGGAGCGACAGGAGCGCGAGAAAGAGACCAACAACCAA
ATGCTCATGATCCGCGAACTGCAGAAACTCTATGCGGACGAGCGGCATCT
AAAGGACAACATTGAGATGCAGTTAAACAACTTCAAGACCCAGTTCGCCA
GCAACGAGGCAGAGAATAGCCGGCTACGGGAATTGCAATCCCAGCTAAAG
GAGGCTCGCTCCCAGCTGAAACAGTTCCAGGCCAAGACCGAGCACTCTGC
AGCAGCGTCAGCGAGTGCGGACAGCGCCGCTCTCCTTCAGCAAGTGCGCC
TTGAGATGCAGCAACTGAAGGAGCAGCATGCAGTGGCCATTCGTCAGGAA
CAGCGTCGCGTGCTGCGTGCCGAGGACAGAGTCGCAA
BO15404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10703-PA | 2088 | CG10703-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 148..1022 | 13..886 | 4335 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11229526..11230316 | 886..97 | 3905 | 99.9 | Minus |
| 3R | 32079331 | 3R | 11230368..11230453 | 98..13 | 415 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:18:43 has no hits.
BO15404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:46:57 Download gff for
BO15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:44 Download gff for
BO15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:24 Download gff for
BO15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 140..1021 | 5..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:36 Download gff for
BO15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 140..1021 | 5..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:36 Download gff for
BO15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11229527..11230314 | 99..885 | 99 | <- | Minus |
| 3R | 11230368..11230461 | 5..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:24 Download gff for
BO15404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7055249..7056036 | 99..885 | 99 | <- | Minus |
| arm_3R | 7056090..7056183 | 5..98 | 95 | | Minus |
BO15404.complete Sequence
2119 bp assembled on 2006-10-11
GenBank Submission: FJ633447
> BO15404.complete
GAAGTTATCAGTCGACATGGAGAAGCGACAGAGGGAGCTGGAGGCGCTGG
TGTCCACCCAAAAGGAGCAACTGGGGCGCTATGAAAAGCGTCTAAAAGAC
GTGGTCACTGCCTACAAGGGTCTGCTTAAGGAGAAGGAGGCATTGGAGAC
GAGTCTGGCGGCGCATGCGGAGGCCACGGCGGTGGGCGAGTCCGGATCGC
CGGCCAGGGAGTTGGAGTCCAAAAAAACCAGCACCGACTCTGCGGATGGA
GCAACCGAGGGCGCTGCACCGGGTCCGCCTGCTCCCCCGGCCGAGGGTCA
ACTGCAGACCCAAATTATCACCCTGATGAACTCGCTGGCCACTCTTTCCG
CTGAGAAATCCCGCATGGAGGCCTCCTTTCAGGCGGATAAAAAGCAACTG
CGCAGCCAAATCGCCCAAAAGGAGCAGACCATTCAGGAGCTTAATACCCG
GGCCAAGGAGCAGGCTGCTCGGGCCAAAAGCGACGTGGACGAGATCAAGG
CCAAGTGGATCGTGGAGCGACAGGAGCGCGAGAAAGAGACCAACAACCAA
ATGCTCATGATCCGCGAACTGCAGAAACTCTATGCGGACGAGCGGCATCT
AAAGGACAACATTGAGATGCAGTTAAACAACTTCAAGACCCAGTTCGCCA
GCAACGAGGCAGAGAATAGCCGGCTACGGGAATTGCAATCCCAGCTAAAG
GAGGCTCGCTCCCAGCTGAAACAGTTCCAGGCCAAGACCGAGCACTCTGC
AGCAGCGTCAGCGAGTGCGGACAGCGCCGCTCTCCTTCAGCAAGTGCGCC
TTGAGATGCAGCAACTGAAGGAGCAGCATGCAGTGGCCATTCGTCAGGAA
CAGCGTCGCGTGCTGCGTGCCGAGGAACAGAGTCGCAGGCAGGCGGCGCT
GCACGAGGATCGCGTGGCCAGTCTAGAGGCACGCCTGGCGGAGCTCAGCA
CCACTGTCGGCAGCTACGACCGCCTGCGTCAGCAAGATCAGGACAGCATC
CATGATTTGAAGCAGCAGCTGCAGGATCTAGAGCAGGCACATGTGCGTCC
AACATCCAATTCAAGGGCGCTAAACGAAGATGTGGACGTAGCCACGCTGG
TTGACGAGATGGTGCGCTTGAAGAAACTGCTTACCACAGCCAATGCCCGT
TCTGCCAATCCACTGGATCTCGGGGAGATCCTATCATTTAGCGGCCAAAC
AGCTACCCGAGTCGAGAGTCACGCCCACTGCGAGCAACAGCTTCAGGGTG
TGCAGCAAATGCTCGAGGCATCCAAGCAGCAGCGACAGCTACTCGAACAG
AAGGTGCAGCTGCAGCACTCGCACATCCAAACGCTGCAGGAGAAGGTGCA
GGTGCTCAATCGCAACATCGACGAGGCGGAAGTCGAACTAAAGCAGCAGG
GCGAAAAGCTGCGCCTGGCATTGAAGAACGAACGAACCAAGTGGCAGGAA
GCCAAGGCTGAACTGGAGAACGAGACGCGCTGCAAACTGAACGAGCTGGA
ACAGCTACTGCAGAAGCAGCGCCAGAGGTCACTGCAGCTGCTGGATGAGA
AGGAGCAGGAGATTAAGACACTGCAGACCTCCTTCGAGGTCTTTCACTCG
GCCAGCGGTGTGGGCAGCACACTGGCCACACCCACACTTGAAGCAGCTGC
CGATTCCTTTCACTATTCCTCCGACACCGACAGCGTGGAGGGGGAGCAGC
GGGAAAGAAAGCTAAAGGTGCGCTCCAAGAAAATGTCGATGGGCGAGAAC
TGCCACATGCTGCACTATGCCAACGAGTTGGCGCGCAAGGACATCGAAAT
CACGACACTGCGGAAAGCCAAATACGCCGCCGAGTCGACGCTGCGAAAGG
CGATCCAGGACAAGGTGACATCTCAGCAGGAAATGCACGAGAAGATCGAG
TGCCTCAAGGAGCAGGTGGACAGACTCGAACGTTGCAAGACGCGCGAGGG
TGCCAATCTGGAGTACCTGAAGAACGTTATTATCAGCTACATTGTTACCC
GGGACGCGGACGGCAAGCGTCACATGCTGAACGCCATCTCGGCGGTGCTC
CAGTTCACCGCCGCAGAGATGCAGGCGATCAATGCATCATTCCAGAAGAA
AGCAAGCTTTCTAGACCAT
BO15404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2088 | CG10703-PA | 1..2085 | 17..2101 | 10425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 148..2236 | 13..2101 | 10430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11228490..11230316 | 1923..97 | 9135 | 100 | Minus |
| 3R | 32079331 | 3R | 11228244..11228423 | 2101..1922 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 11230368..11230453 | 98..13 | 415 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-28 00:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4409..4513 | 1338..1443 | 139 | 63.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1141 | 1485..1561 | 133 | 63.6 | Plus |
BO15404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:34 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 1..2088 | 17..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:45 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 108..2207 | 5..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:29 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 152..2236 | 17..2103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:35 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 108..2207 | 5..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:49 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 152..2236 | 17..2103 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:49 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11230368..11230449 | 17..98 | 100 | | Minus |
| 3R | 11228242..11228421 | 1924..2103 | 98 | <- | Minus |
| 3R | 11228490..11230314 | 99..1923 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:29 Download gff for
BO15404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7056090..7056171 | 17..98 | 100 | | Minus |
| arm_3R | 7053964..7054143 | 1924..2103 | 98 | <- | Minus |
| arm_3R | 7054212..7056036 | 99..1923 | 100 | <- | Minus |
BO15404.pep Sequence
Translation from 16 to 2119
> BO15404.pep
MEKRQRELEALVSTQKEQLGRYEKRLKDVVTAYKGLLKEKEALETSLAAH
AEATAVGESGSPARELESKKTSTDSADGATEGAAPGPPAPPAEGQLQTQI
ITLMNSLATLSAEKSRMEASFQADKKQLRSQIAQKEQTIQELNTRAKEQA
ARAKSDVDEIKAKWIVERQEREKETNNQMLMIRELQKLYADERHLKDNIE
MQLNNFKTQFASNEAENSRLRELQSQLKEARSQLKQFQAKTEHSAAASAS
ADSAALLQQVRLEMQQLKEQHAVAIRQEQRRVLRAEEQSRRQAALHEDRV
ASLEARLAELSTTVGSYDRLRQQDQDSIHDLKQQLQDLEQAHVRPTSNSR
ALNEDVDVATLVDEMVRLKKLLTTANARSANPLDLGEILSFSGQTATRVE
SHAHCEQQLQGVQQMLEASKQQRQLLEQKVQLQHSHIQTLQEKVQVLNRN
IDEAEVELKQQGEKLRLALKNERTKWQEAKAELENETRCKLNELEQLLQK
QRQRSLQLLDEKEQEIKTLQTSFEVFHSASGVGSTLATPTLEAAADSFHY
SSDTDSVEGEQRERKLKVRSKKMSMGENCHMLHYANELARKDIEITTLRK
AKYAAESTLRKAIQDKVTSQQEMHEKIECLKEQVDRLERCKTREGANLEY
LKNVIISYIVTRDADGKRHMLNAISAVLQFTAAEMQAINASFQKKASFLD
H
BO15404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-PA | 695 | CG10703-PA | 1..695 | 1..695 | 3417 | 100 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 671..1347 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 674..1350 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 696..1372 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PC | 1652 | CG5020-PC | 725..1401 | 2..648 | 238 | 20.3 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 262..839 | 101..691 | 232 | 21.3 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 237..836 | 101..691 | 224 | 21.1 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 262..861 | 101..691 | 224 | 21.1 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 906..1506 | 9..638 | 185 | 20.4 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 909..1509 | 9..638 | 185 | 20.4 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 931..1531 | 9..638 | 185 | 20.4 | Plus |
