Clone Sequence Records
BO15410.complete Sequence
1309 bp assembled on 2008-11-10
GenBank Submission: KX796302
> BO15410.complete
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAG
ATCTATCCGAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCC
GCCGCTGTTCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGA
GTGTCTTCGGGCACGGCGATTGCTGGACGCCCAACTTTCTGACCAAGTAC
AACGAACGGGGACAATCGGAGGAGATCATCATCATTGATTTCCAGTTGGC
CAGGTGCTCCTCCTTGGCCCTCGACCTGAGCTTCTTCATCTATTCCTGCA
CTAGCCAGGAGCTGAGGGAACAGCACTACGATGAGCTGCTCCGCGCCTAC
CTGGAGAGCGCCCAGGATTTGATTCAGGATCTCGGTGGCAATGCAGAGTC
TATCATCTCCTGGGAATCACTGCAAGAGGAGCTAAAGAACTTTGGTCGCT
TTGGTTGCGGCATGGGCATCGAATCGCTGCCGATGACGATGATGGAGGAC
GATGAGGTGGCCGATCTGGATGGAATCAAGGAGAACGCCATTCTCACCGA
CATCTGGAATATCACACCCTTCAAGGAGTCCGCCAAGCAGCAGCGACTGG
CTGATATCTTCAAGCACGCCATCGATCAGGGCTACATTAAGGCAAGCTTT
CTAGACCAT
BO15410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1278 | CG2004-PG | 1..1275 | 17..1291 | 6375 | 100 | Plus |
CG2004-RF | 1278 | CG2004-PF | 1..1275 | 17..1291 | 6375 | 100 | Plus |
CG2004-RD | 1278 | CG2004-PD | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1920 | CG2004-RG | 517..1791 | 17..1291 | 6375 | 100 | Plus |
CG2004-RF | 1509 | CG2004-RF | 106..1380 | 17..1291 | 6375 | 100 | Plus |
CG2004-RD | 1729 | CG2004-RD | 326..1600 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8712601..8713406 | 1291..486 | 4030 | 100 | Minus |
X | 23542271 | X | 8713599..8714068 | 486..17 | 2350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:10 has no hits.
BO15410.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:18 Download gff for
BO15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RA | 218..1505 | 9..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:31 Download gff for
BO15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RC | 237..1511 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:43 Download gff for
BO15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RA | 225..1499 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:52 Download gff for
BO15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RD | 326..1600 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:52 Download gff for
BO15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8712598..8713405 | 487..1293 | 99 | <- | Minus |
X | 8713599..8714068 | 17..486 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:31 Download gff for
BO15410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8606631..8607438 | 487..1293 | 99 | <- | Minus |
arm_X | 8607632..8608101 | 17..486 | 100 | | Minus |
BO15410.5prime Sequence
749 bp (708 high quality bases) assembled on 2006-05-29
> BO15410.5prime
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCA
GATCTATCCGAATAGCAAATACGAGACTGGGGCCCCAAACTTCCTGCAG
BO15410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-PA | 1278 | CG2004-RA | 1..646 | 17..662 | 3230 | 100 | Plus |
CG2004-PA | 1278 | CG2004-RA | 645..732 | 662..749 | 390 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-RG | 1920 | CG2004-RG | 517..1248 | 17..749 | 3610 | 99.6 | Plus |
CG2004-RF | 1509 | CG2004-RF | 106..837 | 17..749 | 3610 | 99.6 | Plus |
CG2004-RD | 1729 | CG2004-RD | 326..1057 | 17..749 | 3610 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8713599..8714068 | 486..17 | 2350 | 100 | Minus |
X | 23542271 | X | 8713144..8713406 | 749..486 | 1240 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:49:03 has no hits.
BO15410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:04 Download gff for
BO15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-PA | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:53 Download gff for
BO15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-PA | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:24 Download gff for
BO15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RC | 230..968 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:48 Download gff for
BO15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2004-RD | 319..1057 | 9..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:48 Download gff for
BO15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8713144..8713405 | 487..749 | 98 | <- | Minus |
X | 8713599..8714072 | 9..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:24 Download gff for
BO15410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8607177..8607438 | 487..749 | 98 | <- | Minus |
arm_X | 8607632..8608105 | 9..486 | 99 | | Minus |
BO15410.pep Sequence
Translation from 16 to 1309
> BO15410.pep
MSTFPSFADISAKFSEATLDEIIRNAGGTRHTSYKFGPSGKKGDAYLSRV
FRITIYGVKEAEEGQDEKQLEISVIVKAMPDNLHRRRLFRSVIFFRNEIN
FYTKVLPAIEAFQKSRQPAPKKPFVEYPRCLASLCDGVNDFIALEDVGPR
GYRAPVRQDYISLEDALLTMRTLGRFHGVALAFNALDSKNFEKAAGSLEE
TYYGEHTREWYTGFLLLAENVATDAVKQIYPNSKYETVATNFLQPPLFDD
LINLVSTRSKLSVFGHGDCWTPNFLTKYNERGQSEEIIIIDFQLARCSSL
ALDLSFFIYSCTSQELREQHYDELLRAYLESAQDLIQDLGGNAESIISWE
SLQEELKNFGRFGCGMGIESLPMTMMEDDEVADLDGIKENAILTDIWNIT
PFKESAKQQRLADIFKHAIDQGYIKASFLDH
BO15410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2004-PG | 425 | CG2004-PG | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PF | 425 | CG2004-PF | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PD | 425 | CG2004-PD | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PC | 425 | CG2004-PC | 1..425 | 1..425 | 2206 | 100 | Plus |
CG2004-PA | 425 | CG2004-PA | 1..425 | 1..425 | 2206 | 100 | Plus |