Clone BO15410 Report

Search the DGRC for BO15410

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG2004-RA
Protein status:BO15410.pep: Imported from assembly
Sequenced Size:1309

Clone Sequence Records

BO15410.complete Sequence

1309 bp assembled on 2008-11-10

GenBank Submission: KX796302

> BO15410.complete
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCAG
ATCTATCCGAATAGCAAATACGAGACTGTGGCCACAAACTTCCTGCAGCC
GCCGCTGTTCGATGATCTGATCAATCTGGTGTCCACTCGCTCCAAGTTGA
GTGTCTTCGGGCACGGCGATTGCTGGACGCCCAACTTTCTGACCAAGTAC
AACGAACGGGGACAATCGGAGGAGATCATCATCATTGATTTCCAGTTGGC
CAGGTGCTCCTCCTTGGCCCTCGACCTGAGCTTCTTCATCTATTCCTGCA
CTAGCCAGGAGCTGAGGGAACAGCACTACGATGAGCTGCTCCGCGCCTAC
CTGGAGAGCGCCCAGGATTTGATTCAGGATCTCGGTGGCAATGCAGAGTC
TATCATCTCCTGGGAATCACTGCAAGAGGAGCTAAAGAACTTTGGTCGCT
TTGGTTGCGGCATGGGCATCGAATCGCTGCCGATGACGATGATGGAGGAC
GATGAGGTGGCCGATCTGGATGGAATCAAGGAGAACGCCATTCTCACCGA
CATCTGGAATATCACACCCTTCAAGGAGTCCGCCAAGCAGCAGCGACTGG
CTGATATCTTCAAGCACGCCATCGATCAGGGCTACATTAAGGCAAGCTTT
CTAGACCAT

BO15410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1278 CG2004-PG 1..1275 17..1291 6375 100 Plus
CG2004-RF 1278 CG2004-PF 1..1275 17..1291 6375 100 Plus
CG2004-RD 1278 CG2004-PD 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1920 CG2004-RG 517..1791 17..1291 6375 100 Plus
CG2004-RF 1509 CG2004-RF 106..1380 17..1291 6375 100 Plus
CG2004-RD 1729 CG2004-RD 326..1600 17..1291 6375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8712601..8713406 1291..486 4030 100 Minus
X 23542271 X 8713599..8714068 486..17 2350 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:49:10 has no hits.

BO15410.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:18 Download gff for BO15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RA 218..1505 9..1298 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:31 Download gff for BO15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RC 237..1511 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:43 Download gff for BO15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RA 225..1499 17..1293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:52 Download gff for BO15410.complete
Subject Subject Range Query Range Percent Splice Strand
CG2004-RD 326..1600 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:52 Download gff for BO15410.complete
Subject Subject Range Query Range Percent Splice Strand
X 8712598..8713405 487..1293 99 <- Minus
X 8713599..8714068 17..486 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:31 Download gff for BO15410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8606631..8607438 487..1293 99 <- Minus
arm_X 8607632..8608101 17..486 100   Minus

BO15410.5prime Sequence

749 bp (708 high quality bases) assembled on 2006-05-29

> BO15410.5prime
GAAGTTATCAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGG
CCAAATTCTCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGC
ACCCGGCACACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGC
CTATCTGAGCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGG
AAGAGGGCCAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCC
ATGCCCGACAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTT
CCGCAACGAGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCAT
TCCAGAAGTCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCC
CGCTGCCTGGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGA
GGATGTGGGTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTT
CGCTGGAAGATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGC
GTGGCCCTGGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGC
TGGTTCGCTGGAGGAGACCTACTATGGCGAACACACCCGCGAGTGGTACA
CGGGCTTCCTCCCTGCTGGCGGAGAATGTGGCCACGGACGCCGTCAAGCA
GATCTATCCGAATAGCAAATACGAGACTGGGGCCCCAAACTTCCTGCAG

BO15410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-PA 1278 CG2004-RA 1..646 17..662 3230 100 Plus
CG2004-PA 1278 CG2004-RA 645..732 662..749 390 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-RG 1920 CG2004-RG 517..1248 17..749 3610 99.6 Plus
CG2004-RF 1509 CG2004-RF 106..837 17..749 3610 99.6 Plus
CG2004-RD 1729 CG2004-RD 326..1057 17..749 3610 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8713599..8714068 486..17 2350 100 Minus
X 23542271 X 8713144..8713406 749..486 1240 98.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:49:03 has no hits.

BO15410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:04 Download gff for BO15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-PA 1..732 17..749 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:49:53 Download gff for BO15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-PA 1..732 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:24 Download gff for BO15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-RC 230..968 9..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:48 Download gff for BO15410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2004-RD 319..1057 9..749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:48 Download gff for BO15410.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8713144..8713405 487..749 98 <- Minus
X 8713599..8714072 9..486 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:24 Download gff for BO15410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8607177..8607438 487..749 98 <- Minus
arm_X 8607632..8608105 9..486 99   Minus

BO15410.pep Sequence

Translation from 16 to 1309

> BO15410.pep
MSTFPSFADISAKFSEATLDEIIRNAGGTRHTSYKFGPSGKKGDAYLSRV
FRITIYGVKEAEEGQDEKQLEISVIVKAMPDNLHRRRLFRSVIFFRNEIN
FYTKVLPAIEAFQKSRQPAPKKPFVEYPRCLASLCDGVNDFIALEDVGPR
GYRAPVRQDYISLEDALLTMRTLGRFHGVALAFNALDSKNFEKAAGSLEE
TYYGEHTREWYTGFLLLAENVATDAVKQIYPNSKYETVATNFLQPPLFDD
LINLVSTRSKLSVFGHGDCWTPNFLTKYNERGQSEEIIIIDFQLARCSSL
ALDLSFFIYSCTSQELREQHYDELLRAYLESAQDLIQDLGGNAESIISWE
SLQEELKNFGRFGCGMGIESLPMTMMEDDEVADLDGIKENAILTDIWNIT
PFKESAKQQRLADIFKHAIDQGYIKASFLDH

BO15410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2004-PG 425 CG2004-PG 1..425 1..425 2206 100 Plus
CG2004-PF 425 CG2004-PF 1..425 1..425 2206 100 Plus
CG2004-PD 425 CG2004-PD 1..425 1..425 2206 100 Plus
CG2004-PC 425 CG2004-PC 1..425 1..425 2206 100 Plus
CG2004-PA 425 CG2004-PA 1..425 1..425 2206 100 Plus