Clone Sequence Records
BO15414.3prime Sequence
756 bp (619 high quality bases) assembled on 2006-05-29
> BO15414.3prime
ATGGTCTAGAAAGCTTGCTCCATACTCGGACTGAACGGTGAGCGAAAACT
GACCCTTGGGAATTGAATTGGCATGGTACCAGATGCGTGTGTCCACCAAC
ACAGCATCTCCGGGCTCCACATAGAAGGAGAAGGGCTGACACTGGTGGTC
ACATTCAGGAGCAGGTGCCAGAAACCAGGTCTTGTTGCCACTTAACTGAG
CTTGCCACAACAGGCGGGGAATGTAATCAAGATGCATCACAGCCCCTTGC
TCGTAGCCCATTAATATGAAGTCCGTGTGAGGCATTTCAGCATCGAAGGG
CAGGAAATGCGGGCGGGGATACAGCTTTCTGAGCTCCGCCAGGACGGCCG
GCTGGCAGACACTCCAGCCCACGAACCAGGGCACTCCTTGAGTAAGATTT
GAACGCTCCGCGGACATGGAAAACACATGCTTCAGCGACTTGAGATCAGA
GTTGAAGTGCAGAAACTGGCAATCTGAGTCCATTGCTCCCGGGACACTTT
CGTACAATTCTTTTATGAAGGCAAAGCTGAGGTTCTTTTGTGCTGGCCAG
TGAGCCACCGCCCTCTTCACAATGATGGGCATTGAGGAGTACGCGTGCGG
TGCAAACTCCTCCATGGTGAGATTGGCCAAGATCAGGGGAGCCCTCACCC
CTTTTACCAAACTCGCAGTCACTAATGGGCCTGGTGGCCTCCCATACCAA
GTAGTTTGTTGGGCAGAAAGCAACGCACTCCGAGCAGGATCGAAGATGGT
CTCATA
BO15414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-PA | 993 | CG2211-RA | 355..990 | 654..19 | 3180 | 100 | Minus |
CG2211-PA | 993 | CG2211-RA | 304..357 | 706..653 | 245 | 98.1 | Minus |
CG2211-PA | 993 | CG2211-RA | 272..305 | 739..706 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 1226 | CG2211-RB | 311..1045 | 756..19 | 3585 | 99.3 | Minus |
CG2211-RA | 1941 | CG2211-RA | 1026..1760 | 756..19 | 3585 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1333689..1334210 | 232..756 | 2445 | 99 | Plus |
3L | 28110227 | 3L | 1333420..1333632 | 19..231 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 05:50:23 has no hits.
BO15414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:11 Download gff for
BO15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 257..993 | 16..755 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:00 Download gff for
BO15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 257..993 | 16..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:18:52 Download gff for
BO15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 1027..1760 | 19..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:30 Download gff for
BO15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 1027..1760 | 19..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:30 Download gff for
BO15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1333420..1333632 | 19..231 | 100 | <- | Plus |
3L | 1333689..1334209 | 232..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:18:52 Download gff for
BO15414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1333420..1333632 | 19..231 | 100 | <- | Plus |
arm_3L | 1333689..1334209 | 232..755 | 99 | | Plus |
BO15414.5prime Sequence
840 bp (773 high quality bases) assembled on 2006-05-29
> BO15414.5prime
GAAGTTATCAGTCGACATGTTTCTGTTCATCAGCCGTCCCACGCGGACGC
TGGGCAACCGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCT
GATCAACTGGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTC
CACACAGGAGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACA
ACCCGAACCGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATC
ATGGTGGCCACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGT
GCGTTGCTTTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCA
TTAGTGACTGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCC
AATCTCACCATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCAT
CATTGTGAAGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCT
TTGCCTTCATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCA
GATTGCCAGTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGT
GTTTTCCATGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGT
TCGTGGGCTGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAG
CTGTATCCCCGCCCGCATTTCCTGCCCTTCGATGCTGAAATGCCTCACAC
GGACTTCATATTAATGGGCTACGAGCAAGGGGCTGTGATGCATCTTGATT
ACATTCCCCGCCTGTTGTGGCAAGCTCATTTAAGTGGCAA
BO15414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-PA | 993 | CG2211-RA | 1..824 | 17..840 | 4095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 1226 | CG2211-RB | 56..879 | 17..840 | 4105 | 99.9 | Plus |
CG2211-RA | 1941 | CG2211-RA | 771..1594 | 17..840 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1333689..1334457 | 793..25 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 1333586..1333632 | 840..794 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:15:56 has no hits.
BO15414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:12 Download gff for
BO15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:01 Download gff for
BO15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:18 Download gff for
BO15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 759..1592 | 6..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:28 Download gff for
BO15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 759..1592 | 6..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:28 Download gff for
BO15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1333588..1333632 | 794..838 | 97 | <- | Minus |
3L | 1333689..1334457 | 25..793 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:18 Download gff for
BO15414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1333588..1333632 | 794..838 | 97 | <- | Minus |
arm_3L | 1333689..1334457 | 25..793 | 100 | | Minus |
BO15414.complete Sequence
1024 bp (1024 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633448
> BO15414.complete
GAAGTTATCAGTCGACATGTTTCTGTTCATCAGCCGTCCCACGCGGACGC
TGGGCAACCGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCT
GATCAACTGGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTC
CACACAGGAGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACA
ACCCGAACCGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATC
ATGGTGGCCACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGT
GCGTTGCTTTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCA
TTAGTGACTGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCC
AATCTCACCATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCAT
CATTGTGAAGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCT
TTGCCTTCATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCA
GATTGCCAGTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGT
GTTTTCCATGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGT
TCGTGGGCTGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAG
CTGTATCCCCGCCCGCATTTCCTGCCCTTCGATGCTGAAATGCCTCACAC
GGACTTCATATTAATGGGCTACGAGCAAGGGGCTGTGATGCATCTTGATT
ACATTCCCCGCCTGTTGTGGCAAGCTCAGTTAAGTGGCAACAAGACCTGG
TTTCTGGCACCTGCTCCTGAATGTGACCACCAGTGTCAGCCCTTCTCCTT
CTATGTGGAGCCCGGAGATGCTGTGTTGGTGGACACACGCATCTGGTACC
ATGCCAATTCAATTCCCAAGGGTCAGTTTTCGCTCACCGTTCAGTCCGAG
TATGGAGCAAGCTTTCTAGACCAT
BO15414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 993 | CG2211-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG2211-RA | 993 | CG2211-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-RB | 1226 | CG2211-RB | 56..1045 | 17..1006 | 4950 | 100 | Plus |
CG2211-RA | 1941 | CG2211-RA | 771..1760 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1333689..1334457 | 793..25 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 1333420..1333632 | 1006..794 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:08:04 has no hits.
BO15414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:42 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 1..993 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:56 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 703..1704 | 6..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:55 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 777..1760 | 23..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:43 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 703..1704 | 6..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:14 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2211-RA | 777..1760 | 23..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:14 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1333417..1333632 | 794..1008 | 99 | <- | Minus |
3L | 1333689..1334459 | 23..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:55 Download gff for
BO15414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1333417..1333632 | 794..1008 | 99 | <- | Minus |
arm_3L | 1333689..1334459 | 23..793 | 99 | | Minus |
BO15414.pep Sequence
Translation from 16 to 1024
> BO15414.pep
MFLFISRPTRTLGNRMQAVRERLGPDLADQLDALHRNVMRTGLVSTQELE
EAFRKTRDMDHNPNRLNLLWLLGIVFFIMVATPVFYETISFLLGVRCFLP
NNYLVWEATRPISDCEFCKGVRAPLILANLTMEEFAPHAYSSMPIIVKRA
VAHWPAQKNLSFAFIKELYESVPGAMDSDCQFLHFNSDLKSLKHVFSMSA
ERSNLTQGVPWFVGWSVCQPAVLAELRKLYPRPHFLPFDAEMPHTDFILM
GYEQGAVMHLDYIPRLLWQAQLSGNKTWFLAPAPECDHQCQPFSFYVEPG
DAVLVDTRIWYHANSIPKGQFSLTVQSEYGASFLDH
BO15414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2211-PB | 330 | CG2211-PB | 1..330 | 1..330 | 1773 | 100 | Plus |
CG2211-PA | 330 | CG2211-PA | 1..330 | 1..330 | 1773 | 100 | Plus |
CG14331-PC | 312 | CG14331-PC | 54..311 | 71..329 | 397 | 34 | Plus |