Clone Sequence Records
BO15415.3prime Sequence
803 bp (703 high quality bases) assembled on 2006-05-29
> BO15415.3prime
ATGGTCTAGAAAGCTTGCTCCGCTAGCTCCTGCCATTGCTGGCAAACCGG
ACAGGCTAACGCTTACGCCGGAAGTGGGCGTAACTGTGCCAGCAGCGGTG
GCCGACGAGGAGGATCGCTTGAGGGCCTTGCGTATAATCGTCCAGTCCTC
CATGATATCCTCCTCGCGCAGCATGTACACGACATAGGGACCCGTGACGG
TGACGGCCTTCTTGCGACCCGGTCCGCGCACCTTGCTCTGCCGCTTGTCG
GTGCCCCAGTCGGCCCACGAGATGTCCACGTTGTGGCGATCCTCCTCCAG
GCGACGGATGCGCTCCATGAACTCCTCGCGCAGATTGTCCAATGCCATGT
GTTTCTCGCTCTCAAAGTGCTGGACGGCAGCTTGTTCCTCGGACTGGTAT
TTGTGCTCGATATTCTGCAGTCGGTACTTGCGCAGGACGTCCGCCACCTC
GATCCTGGTGCGATACTTCTTGTCCAGTTCCTTTTGCGGCTGGACAAACT
CCTCGGAACGCCCGGAACGCACCTCGGCCAATTGTCGTTCGATGAGATTG
ATGCGCTCGACGTAGTACTGTTCCCGCAACTCGTTAAATTGGCGCTCCAA
GCTCAGCAAATCCTCGATGTGCTCTGCCCGCCGGCGGTCTATTTCACTGG
CATCCAACTCGGAGGAGTCATCCGAATCGCATTCGTTGGCCTCCTCCTCG
TCGGAGGTGTCGTGTGGCTGGCTGGAATTCGAGTGCTCCGATTCTCCGCC
AGAAACGTCGCCTTCGCCATCGGATTCCCCATTCTTCCCGGGCATGTCAA
CTG
BO15415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4400-PA | 780 | CG4400-RA | 1..777 | 795..19 | 3835 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 1323 | CG4400-RA | 182..962 | 799..19 | 3860 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12908347..12908690 | 19..362 | 1720 | 100 | Plus |
X | 23542271 | X | 12908936..12909180 | 361..605 | 1225 | 100 | Plus |
X | 23542271 | X | 12909248..12909441 | 606..799 | 925 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:07:18 has no hits.
BO15415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:13 Download gff for
BO15415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 18..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:03 Download gff for
BO15415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 18..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:32 Download gff for
BO15415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 177..969 | 10..803 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:07 Download gff for
BO15415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Brms1-RA | 177..969 | 10..803 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:07 Download gff for
BO15415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12908340..12908688 | 10..360 | 98 | <- | Plus |
X | 12908936..12909180 | 361..605 | 100 | <- | Plus |
X | 12909248..12909446 | 606..803 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:32 Download gff for
BO15415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12802373..12802721 | 10..360 | 98 | <- | Plus |
arm_X | 12802969..12803213 | 361..605 | 100 | <- | Plus |
arm_X | 12803281..12803479 | 606..803 | 97 | | Plus |
BO15415.5prime Sequence
809 bp (761 high quality bases) assembled on 2006-05-29
> BO15415.5prime
GAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGGTTGCCAGCAATGGCAGGAGCTAGCGGAGCAAGCT
TTCTAGACC
BO15415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4400-PA | 780 | CG4400-RA | 1..777 | 17..793 | 3860 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 1323 | CG4400-RA | 186..962 | 17..793 | 3870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12908347..12908690 | 793..450 | 1705 | 99.7 | Minus |
X | 23542271 | X | 12908936..12909180 | 451..207 | 1225 | 100 | Minus |
X | 23542271 | X | 12909248..12909437 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:15:24 has no hits.
BO15415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:14 Download gff for
BO15415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:04 Download gff for
BO15415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-PA | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:58 Download gff for
BO15415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 177..969 | 9..802 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:20 Download gff for
BO15415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Brms1-RA | 177..969 | 9..802 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:20 Download gff for
BO15415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12908936..12909180 | 207..451 | 100 | <- | Minus |
X | 12909248..12909446 | 9..206 | 98 | | Minus |
X | 12908340..12908688 | 452..802 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:58 Download gff for
BO15415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12802373..12802721 | 452..802 | 98 | <- | Minus |
arm_X | 12802969..12803213 | 207..451 | 100 | <- | Minus |
arm_X | 12803281..12803479 | 9..206 | 98 | | Minus |
BO15415.complete Sequence
811 bp (811 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633449
> BO15415.complete
GAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGAGCAAGCT
TTCTAGACCAT
BO15415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 780 | CG4400-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-RA | 1323 | CG4400-RA | 186..962 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12908347..12908690 | 793..450 | 1720 | 100 | Minus |
X | 23542271 | X | 12908936..12909180 | 451..207 | 1225 | 100 | Minus |
X | 23542271 | X | 12909248..12909437 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:55 has no hits.
BO15415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:44 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 1..780 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:58 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 153..945 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:36 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 186..962 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:44 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4400-RA | 153..945 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:01 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Brms1-RA | 186..962 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:01 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12908343..12908688 | 452..795 | 99 | <- | Minus |
X | 12908936..12909180 | 207..451 | 100 | <- | Minus |
X | 12909248..12909437 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:36 Download gff for
BO15415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12802376..12802721 | 452..795 | 99 | <- | Minus |
arm_X | 12802969..12803213 | 207..451 | 100 | <- | Minus |
arm_X | 12803281..12803470 | 17..206 | 100 | | Minus |
BO15415.pep Sequence
Translation from 16 to 811
> BO15415.pep
MPVKNGESDGEGDVSGGESEHSNSSQPHDTSDEEEANECDSDDSSELDAS
EIDRRRAEHIEDLLSLERQFNELREQYYVERINLIERQLAEVRSGRSEEF
VQPQKELDKKYRTRIEVADVLRKYRLQNIEHKYQSEEQAAVQHFESEKHM
ALDNLREEFMERIRRLEEDRHNVDISWADWGTDKRQSKVRGPGRKKAVTV
TGPYVVYMLREEDIMEDWTIIRKALKRSSSSATAAGTVTPTSGVSVSLSG
LPAMAGASGASFLDH
BO15415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Brms1-PA | 259 | CG4400-PA | 1..259 | 1..259 | 1323 | 100 | Plus |
CG14220-PB | 327 | CG14220-PB | 12..254 | 29..259 | 176 | 24.3 | Plus |
CG14220-PA | 327 | CG14220-PA | 12..254 | 29..259 | 176 | 24.3 | Plus |