Clone BO15415 Report

Search the DGRC for BO15415

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG4400-RA
Protein status:BO15415.pep: validated full length
Sequenced Size:811

Clone Sequence Records

BO15415.3prime Sequence

803 bp (703 high quality bases) assembled on 2006-05-29

> BO15415.3prime
ATGGTCTAGAAAGCTTGCTCCGCTAGCTCCTGCCATTGCTGGCAAACCGG
ACAGGCTAACGCTTACGCCGGAAGTGGGCGTAACTGTGCCAGCAGCGGTG
GCCGACGAGGAGGATCGCTTGAGGGCCTTGCGTATAATCGTCCAGTCCTC
CATGATATCCTCCTCGCGCAGCATGTACACGACATAGGGACCCGTGACGG
TGACGGCCTTCTTGCGACCCGGTCCGCGCACCTTGCTCTGCCGCTTGTCG
GTGCCCCAGTCGGCCCACGAGATGTCCACGTTGTGGCGATCCTCCTCCAG
GCGACGGATGCGCTCCATGAACTCCTCGCGCAGATTGTCCAATGCCATGT
GTTTCTCGCTCTCAAAGTGCTGGACGGCAGCTTGTTCCTCGGACTGGTAT
TTGTGCTCGATATTCTGCAGTCGGTACTTGCGCAGGACGTCCGCCACCTC
GATCCTGGTGCGATACTTCTTGTCCAGTTCCTTTTGCGGCTGGACAAACT
CCTCGGAACGCCCGGAACGCACCTCGGCCAATTGTCGTTCGATGAGATTG
ATGCGCTCGACGTAGTACTGTTCCCGCAACTCGTTAAATTGGCGCTCCAA
GCTCAGCAAATCCTCGATGTGCTCTGCCCGCCGGCGGTCTATTTCACTGG
CATCCAACTCGGAGGAGTCATCCGAATCGCATTCGTTGGCCTCCTCCTCG
TCGGAGGTGTCGTGTGGCTGGCTGGAATTCGAGTGCTCCGATTCTCCGCC
AGAAACGTCGCCTTCGCCATCGGATTCCCCATTCTTCCCGGGCATGTCAA
CTG

BO15415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4400-PA 780 CG4400-RA 1..777 795..19 3835 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 1323 CG4400-RA 182..962 799..19 3860 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12908347..12908690 19..362 1720 100 Plus
X 23542271 X 12908936..12909180 361..605 1225 100 Plus
X 23542271 X 12909248..12909441 606..799 925 98.5 Plus
Blast to na_te.dros performed on 2015-02-11 18:07:18 has no hits.

BO15415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:13 Download gff for BO15415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 18..795 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:03 Download gff for BO15415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 18..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:29:32 Download gff for BO15415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 177..969 10..803 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:07 Download gff for BO15415.3prime
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 177..969 10..803 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:07 Download gff for BO15415.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12908340..12908688 10..360 98 <- Plus
X 12908936..12909180 361..605 100 <- Plus
X 12909248..12909446 606..803 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:29:32 Download gff for BO15415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802373..12802721 10..360 98 <- Plus
arm_X 12802969..12803213 361..605 100 <- Plus
arm_X 12803281..12803479 606..803 97   Plus

BO15415.5prime Sequence

809 bp (761 high quality bases) assembled on 2006-05-29

> BO15415.5prime
GAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGGTTGCCAGCAATGGCAGGAGCTAGCGGAGCAAGCT
TTCTAGACC

BO15415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4400-PA 780 CG4400-RA 1..777 17..793 3860 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 1323 CG4400-RA 186..962 17..793 3870 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12908347..12908690 793..450 1705 99.7 Minus
X 23542271 X 12908936..12909180 451..207 1225 100 Minus
X 23542271 X 12909248..12909437 206..17 950 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:15:24 has no hits.

BO15415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:14 Download gff for BO15415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 17..794 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:04 Download gff for BO15415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-PA 1..780 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:58 Download gff for BO15415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 177..969 9..802 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:20 Download gff for BO15415.5prime
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 177..969 9..802 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:20 Download gff for BO15415.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12908936..12909180 207..451 100 <- Minus
X 12909248..12909446 9..206 98   Minus
X 12908340..12908688 452..802 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:58 Download gff for BO15415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802373..12802721 452..802 98 <- Minus
arm_X 12802969..12803213 207..451 100 <- Minus
arm_X 12803281..12803479 9..206 98   Minus

BO15415.complete Sequence

811 bp (811 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633449

> BO15415.complete
GAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGATGGCGAAG
GCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCAGCCACAC
GACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATGACTCCTC
CGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCACATCGAGG
ATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACAGTACTAC
GTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGCGTTCCGG
GCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAGAAGTATC
GCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACTGCAGAAT
ATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGCACTTTGA
GAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTCATGGAGC
GCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTCGTGGGCC
GACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGGGTCGCAA
GAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTGCGCGAGG
AGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAAGCGATCC
TCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCGGCGTAAG
CGTTAGCCTGTCCGGTTTGCCAGCAATGGCAGGAGCTAGCGGAGCAAGCT
TTCTAGACCAT

BO15415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 780 CG4400-PA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-RA 1323 CG4400-RA 186..962 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12908347..12908690 793..450 1720 100 Minus
X 23542271 X 12908936..12909180 451..207 1225 100 Minus
X 23542271 X 12909248..12909437 206..17 950 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:55 has no hits.

BO15415.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:44 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 1..780 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:58 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 153..945 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:36 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 186..962 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:44 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
CG4400-RA 153..945 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:01 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
Brms1-RA 186..962 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:01 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
X 12908343..12908688 452..795 99 <- Minus
X 12908936..12909180 207..451 100 <- Minus
X 12909248..12909437 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:36 Download gff for BO15415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12802376..12802721 452..795 99 <- Minus
arm_X 12802969..12803213 207..451 100 <- Minus
arm_X 12803281..12803470 17..206 100   Minus

BO15415.pep Sequence

Translation from 16 to 811

> BO15415.pep
MPVKNGESDGEGDVSGGESEHSNSSQPHDTSDEEEANECDSDDSSELDAS
EIDRRRAEHIEDLLSLERQFNELREQYYVERINLIERQLAEVRSGRSEEF
VQPQKELDKKYRTRIEVADVLRKYRLQNIEHKYQSEEQAAVQHFESEKHM
ALDNLREEFMERIRRLEEDRHNVDISWADWGTDKRQSKVRGPGRKKAVTV
TGPYVVYMLREEDIMEDWTIIRKALKRSSSSATAAGTVTPTSGVSVSLSG
LPAMAGASGASFLDH

BO15415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Brms1-PA 259 CG4400-PA 1..259 1..259 1323 100 Plus
CG14220-PB 327 CG14220-PB 12..254 29..259 176 24.3 Plus
CG14220-PA 327 CG14220-PA 12..254 29..259 176 24.3 Plus