Clone BO15416 Report

Search the DGRC for BO15416

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptwda-RA
Protein status:BO15416.pep: validated full length
Sequenced Size:2263

Clone Sequence Records

BO15416.3prime Sequence

850 bp (783 high quality bases) assembled on 2006-05-29

> BO15416.3prime
ATGGTCTAGAAAGCTTGCAGTGCCGATGCAGTAGAGCGTCTTGCTGGTCC
CGTAAAAAACATCGACCAAGCGCTGGCAGGAACTATTGACAGTAAGCACA
CGATTCGTTGTAGCTGATGATGAGCTTCCAGCACTACTGTTGTCACTCAT
GGGCGATAGTTTCTTGATGTCCCACAATCGCAAGGTACCATCGCTGCACG
CTGTGGCCAGGTGCCTATTGTGCGTGCTCCAGGAAAGAGAACTAATGCTC
GCCGAGTGATCCTTGAGCTCAGCCAGCTGTGCTCCGGCGGCCAAGTCGAA
TATACGCACCTTCGTTTCCTCTCCGGCGGCAGCCAACATCTTTCCATCTG
GGCTAAACGCCAGCTGGGTCACCGCCTGACGGCAGTCGGCAAAGACACGC
ATCAATTTTCCGCTGGTTGCACACCACAGGCGAACGGAGTGATCTGCCGA
TCCTGTGGCTATGTAGTTGCCATTCGGATGGAACGCAACGCACTCAACAT
CCTGTGTATGCCCGGCATAAATTATGAGCGCATGTTCCTTCTCTAGCGAC
CAGAGGCGCGCACTCAAATCCTTGGAACCCGTTACCACGTATTGGCCCAC
TGGACTTTCGTCCAAGCACCAAATTGGGTAGTTGTGACTTCTGTATATGG
CGGCGCAATGCAGGTTGTGGGCACGCCAGCACCGCATGGTTGCGTCTTTG
GACACACTATACATGAGTGGGTAGTGGGCGGAGAAGCGCACATCGGTGAC
TCCTTTTGTGTGACCTCGCAGCTGAAATCCGCCGTATTCGTTGTAGGAGT
TATCAGCATATTTGCAATGTCGCGCCCTGTTGCGTTCCCGTCTCTCCTCC

BO15416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4448-PA 2232 CG4448-RA 1398..2229 850..19 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
wda-RA 2744 CG4448-RA 1486..2317 850..19 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23255701..23256049 146..494 1745 100 Plus
3R 32079331 3R 23256108..23256408 493..793 1505 100 Plus
3R 32079331 3R 23255497..23255625 19..147 645 100 Plus
3R 32079331 3R 23256486..23256542 794..850 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:22:00 has no hits.

BO15416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:15 Download gff for BO15416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4448-PA 1398..2232 15..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:06 Download gff for BO15416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4448-PA 1398..2232 15..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:31 Download gff for BO15416.3prime
Subject Subject Range Query Range Percent Splice Strand
wda-RA 1486..2322 14..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:40 Download gff for BO15416.3prime
Subject Subject Range Query Range Percent Splice Strand
wda-RA 1486..2322 14..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:40 Download gff for BO15416.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23255492..23255623 14..145 98 <- Plus
3R 23255701..23256047 146..492 100 <- Plus
3R 23256108..23256408 493..793 100 <- Plus
3R 23256486..23256542 794..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:31 Download gff for BO15416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19081214..19081345 14..145 98 <- Plus
arm_3R 19081423..19081769 146..492 100 <- Plus
arm_3R 19081830..19082130 493..793 100 <- Plus
arm_3R 19082208..19082264 794..850 100   Plus

BO15416.5prime Sequence

890 bp (775 high quality bases) assembled on 2006-05-29

> BO15416.5prime
GAAGTTATCAGTCGACATGAGCCTGCCCAGCGCCAGCAACCACGCACATG
CTGCATCGCCCGTCTACAGCAACAGCAATAACAACAAGTCGAGCGCGAGC
AGCAAAAAGACCTCCTCCAAAAACGATTTGCTACGCTGCGCCGTGGGACT
CCTGCTGAAGCAGAAAAACTACGTGAGCAACGAACGATTTCGGCGGTCGG
ATTTTTTGCTGCTGCAAAACAAACAGCAGTTTGCTGTCAACAAAATGCTG
GATACGGATTTGCACGGTGGCAATAGCTTCACCTTTTCAAATGTCCAGGT
TATCACCAACAACCAGCACACTGTGGACCAGCAATTTGGTCGGTTTTCGC
AGTTCGTGGAGGCCCAGGCCGAACCGCTGCGTCTGGAAATGAAGCGCTTT
TATGGACCCATGCTGTGCCACTTCTATCTGGATCTGCTCAAGGCTCGCGA
ACCGCGTGGCGCTGTGGAGTTGTTGCGCAAATATGCTCACTTGGTGGCCC
CCGTGGATATGTACGATGCACCACCACCTACCAAGATCAACGGATGCTCC
ACTACGGCCAATGAGTCCACTTTTAACATACGCTTCGCAAAGGAAGCCCA
GGACACTGGGGACACGGAACTGGACTACTTTATGCGCCTGGTGCAAACCC
TGAGTGGCTACACACGGCTGGAGGCAGCAGAGTCCGATGACACAGTGGCC
CATTTTCGATCTTCGAAATACGAACTACATACTACAGCCGTAGTTGTTAA
TAGGATATGCGCTTATCTCCAACGACGGGGCCACGTTTTAATTATGAACC
TACTCTACACCTGGTTGCATGTCCATATAGTGGAGAATGAGCAGCGCGCC
TTTAGTGAGGATCACCTGCTTGGCTTGACGGATGACCTGG

BO15416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4448-PA 2232 CG4448-RA 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
wda-RA 2744 CG4448-RA 89..962 17..890 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23257066..23257781 890..175 3580 100 Minus
3R 32079331 3R 23257841..23257999 175..17 795 100 Minus
Blast to na_te.dros performed 2015-02-12 00:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3244..3320 11..87 141 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6925 28..114 132 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1035..1156 1..126 132 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2427 28..112 130 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2387 67..126 120 66.7 Plus

BO15416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:16 Download gff for BO15416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4448-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:08 Download gff for BO15416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4448-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:58:07 Download gff for BO15416.5prime
Subject Subject Range Query Range Percent Splice Strand
wda-RA 89..962 17..890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:06 Download gff for BO15416.5prime
Subject Subject Range Query Range Percent Splice Strand
wda-RA 89..962 17..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:06 Download gff for BO15416.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23257066..23257780 176..890 100 <- Minus
3R 23257841..23257999 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:58:07 Download gff for BO15416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19082788..19083502 176..890 100 <- Minus
arm_3R 19083563..19083721 17..175 100   Minus

BO15416.complete Sequence

2263 bp assembled on 2006-10-11

GenBank Submission: FJ633450

> BO15416.complete
GAAGTTATCAGTCGACATGAGCCTGCCCAGCGCCAGCAACCACGCACATG
CTGCATCGCCCGTCTACAGCAACAGCAATAACAACAAGTCGAGCGCGAGC
AGCAAAAAGACCTCCTCCAAAAACGATTTGCTACGCTGCGCCGTGGGACT
CCTGCTGAAGCAGAAAAACTACGTGAGCAACGAACGATTTCGGCGGTCGG
ATTTTTTGCTGCTGCAAAACAAACAGCAGTTTGCTGTCAACAAAATGCTG
GATACGGATTTGCACGGTGGCAATAGCTTCACCTTTTCAAATGTCCAGGT
TATCACCAACAACCAGCACACTGTGGACCAGCAATTTGGTCGGTTTTCGC
AGTTCGTGGAGGCCCAGGCCGAACCGCTGCGTCTGGAAATGAAGCGCTTT
TATGGACCCATGCTGTGCCACTTCTATCTGGATCTGCTCAAGGCTCGCGA
ACCGCGTGGCGCTGTGGAGTTGTTGCGCAAATATGCTCACTTGGTGGCCC
CCGTGGATATGTACGATGCACCACCACCTACCAAGATCAACGGATGCTCC
ACTACGGCCAATGAGTCCACTTTTAACATACGCTTCGCAAAGGAAGCCCA
GGACACTGGGGACACGGAACTGGACTACTTTATGCGCCTGGTGCAAACCC
TGAGTGGCTACACACGGCTGGAGGCAGCAGAGTCCGATGACACAGTGGCC
CATTTTCGATCTTCGAAATACGAACTACATACTACAGCCGTAGTTGTTAA
TAGGATATGCGCTTATCTCCAACGACGGGGCCACGTTTTAATTATGAACC
TACTCTACACCTGGTTGCATGTCCATATAGTGGAGAATGAGCAGCGCGCC
TTTAGTGAGGATCACCTGCTTGGCTTGACGGATGACCTGGAAGGTGAGGA
TGGAGAGGACGATGTTGTTTCCAAACCAGCAGTAACCCTTAATACCCGCG
GAGACATAAGACCAAGCAAATCCCTCACTGAAAAGTCGAACCGAAAACGA
CCCGCTGAGGAGCCAAACATTATGCTAGAAACAGACATCAAACAGGAGGT
AGAAACGGATGAATCTGCAGAGCTTAGTAAATTACAACTGAATATAGACG
CCTGCTTGGACACCCTTAAATCGGCCACTGAACAGATACTCAAGTCTCAG
GTGGAGTTGCCGCGATTTCTCAGAATCAGTGAACGTTCTCGGGGCCTCAC
CTCCGCCCATCTGGATCCCAGTGAGTGCCACATGTTAGCCGGGTTCGACA
ATTCTGCCGTACAGCTGTGGCAGTTAAACCAGAGCTACTGCCGCGGCAAG
AGCTTCTACAGACGCTATCCGCAAAAGCGGTGTCCCTGGGAGCTGAACAA
TTGCGCGAATCAAGAGGAGGAGACGGATGAGGACAGCAGCGATGAGGATG
TCAAGTGCTCTGAGGAGGAGAGACGGGAACGCAACAGGGCGCGACATTGC
AAATATGCTGATAACTCCTACAACGAATACGGCGGATTTCAGCTGCGAGG
TCACACAAAAGGAGTCACCGATGTGCGCTTCTCCGCCCACTACCCACTCA
TGTATAGTGTGTCCAAAGACGCAACCATGCGGTGCTGGCGTGCCCACAAC
CTGCATTGCGCCGCCATATACAGAAGTCACAACTACCCAATTTGGTGCTT
GGACGAAAGTCCAGTGGGCCAATACGTGGTAACGGGTTCCAAGGATTTGA
GTGCGCGCCTCTGGTCGCTAGAGAAGGAACATGCGCTCATAATTTATGCC
GGGCATACACAGGATGTTGAGTGCGTTGCGTTCCATCCGAATGGCAACTA
CATAGCCACAGGATCGGCAGATCACTCCGTTCGCCTGTGGTGTGCAACCA
GCGGAAAATTGATGCGTGTCTTTGCCGACTGCCGTCAGGCGGTGACCCAG
CTGGCGTTTAGCCCAGATGGAAAGATGTTGGCTGCCGCCGGAGAGGAAAC
GAAGGTGCGTATATTCGACTTGGCCGCCGGAGCACAGCTGGCTGAGCTCA
AGGATCACTCGGCGAGCATTAGTTCTCTTTCCTGGAGCACGCACAATAGG
CACCTGGCCACAGCGTGCAGCGATGGTACCTTGCGATTGTGGGACATCAA
GAAACTATCGCCCATGAGTGACAACAGTAGTGCTGGAAGCTCATCATCAG
CTACAACGAATCGTGTGCTTACTGTCAATAGTTCCTGCCAGCGCTTGGTC
GATGTTTTTTACGGGACCAGCAAGACGCTCTACTGCATCGGCACTGCAAG
CTTTCTAGACCAT

BO15416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
wda-RA 2232 CG4448-PA 1..2229 17..2245 11145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
wda-RA 2744 CG4448-RA 89..2317 17..2245 11145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23256486..23257781 1470..175 6480 100 Minus
3R 32079331 3R 23255701..23256049 2118..1770 1745 100 Minus
3R 32079331 3R 23256108..23256408 1771..1471 1505 100 Minus
3R 32079331 3R 23257841..23257999 175..17 795 100 Minus
3R 32079331 3R 23255497..23255625 2245..2117 645 100 Minus
Blast to na_te.dros performed 2014-11-27 16:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3244..3320 11..87 141 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..6925 28..114 132 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1035..1156 1..126 132 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2427 28..112 130 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2387 67..126 120 66.7 Plus

BO15416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:37 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
wda-RA 1..2232 17..2249 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:46 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
wda-RA 59..2292 17..2250 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:25 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
wda-RA 89..2317 17..2247 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:37 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
wda-RA 59..2292 17..2250 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:09 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
wda-RA 89..2317 17..2247 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:09 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23256486..23257780 176..1470 100 <- Minus
3R 23257841..23257999 17..175 100   Minus
3R 23255495..23255623 2119..2247 98 <- Minus
3R 23255701..23256047 1772..2118 100 <- Minus
3R 23256108..23256408 1471..1771 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:25 Download gff for BO15416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19081217..19081345 2119..2247 98 <- Minus
arm_3R 19081423..19081769 1772..2118 100 <- Minus
arm_3R 19081830..19082130 1471..1771 100 <- Minus
arm_3R 19082208..19083502 176..1470 100 <- Minus
arm_3R 19083563..19083721 17..175 100   Minus

BO15416.pep Sequence

Translation from 16 to 2263

> BO15416.pep
MSLPSASNHAHAASPVYSNSNNNKSSASSKKTSSKNDLLRCAVGLLLKQK
NYVSNERFRRSDFLLLQNKQQFAVNKMLDTDLHGGNSFTFSNVQVITNNQ
HTVDQQFGRFSQFVEAQAEPLRLEMKRFYGPMLCHFYLDLLKAREPRGAV
ELLRKYAHLVAPVDMYDAPPPTKINGCSTTANESTFNIRFAKEAQDTGDT
ELDYFMRLVQTLSGYTRLEAAESDDTVAHFRSSKYELHTTAVVVNRICAY
LQRRGHVLIMNLLYTWLHVHIVENEQRAFSEDHLLGLTDDLEGEDGEDDV
VSKPAVTLNTRGDIRPSKSLTEKSNRKRPAEEPNIMLETDIKQEVETDES
AELSKLQLNIDACLDTLKSATEQILKSQVELPRFLRISERSRGLTSAHLD
PSECHMLAGFDNSAVQLWQLNQSYCRGKSFYRRYPQKRCPWELNNCANQE
EETDEDSSDEDVKCSEEERRERNRARHCKYADNSYNEYGGFQLRGHTKGV
TDVRFSAHYPLMYSVSKDATMRCWRAHNLHCAAIYRSHNYPIWCLDESPV
GQYVVTGSKDLSARLWSLEKEHALIIYAGHTQDVECVAFHPNGNYIATGS
ADHSVRLWCATSGKLMRVFADCRQAVTQLAFSPDGKMLAAAGEETKVRIF
DLAAGAQLAELKDHSASISSLSWSTHNRHLATACSDGTLRLWDIKKLSPM
SDNSSAGSSSSATTNRVLTVNSSCQRLVDVFYGTSKTLYCIGTASFLDH

BO15416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
wda-PA 743 CG4448-PA 1..743 1..743 3901 100 Plus
Taf5-PA 704 CG7704-PA 305..651 322..698 462 28.7 Plus
can-PA 942 CG6577-PA 622..855 493..719 289 28.6 Plus
wds-PB 361 CG17437-PB 66..272 491..696 276 30.9 Plus
wds-PA 361 CG17437-PA 66..272 491..696 276 30.9 Plus
wds-PB 361 CG17437-PB 110..316 493..695 218 25.1 Plus