Clone Sequence Records
BO15422.3prime Sequence
580 bp (508 high quality bases) assembled on 2006-05-29
> BO15422.3prime
ATGGTCTAGAAAGCTTGCTACGTTGCGTCGGAGCACCTTCTTGGCCGCCT
TGATGTTGGGCACGAGGGCCTTGACCTCGCTGCAGTCGTTGAGGAACGGA
TGGCTGAGCAACTCGTCGGCGGTGGCCCTTCGGTCCACCTCCACCTGGAG
ACAGCGATCGAGAAAGTCTTGAAGGTTGGGACTCAGCTTATCCCAGCTCT
TGATATCCGGCCGACCGTTGGCGGCGATCAGGTAGAGGGCGCGGAGTGGA
GTCTCGTATAGGTAGGGTGGCTGGCCTTCGATCATCTCGATGGCCATGAT
GCCGATAGACCAGATGTCCACCTTCTTGCCGTACTTCTTGCGCGTGACCA
CTTCGGGCGCCATCCAGTACGGCGTTCCCACCATTGTCTGGCGCTTCTCA
TCGCCCTCGATGTTGGCGCAGAACCCATAGTCCGTCACCTTAACACTGCC
ATCCATGCCCAGCAGCACGTTGTCTGACTTGATGTCCCGGTGGATAATGC
CCTTAGCGTGCTGAAAACTAATAGCGTAGAGTGTCTCGCGGTAGATGCAG
GCAATCTGGCGCTCCTTCATCACAGTCTCG
BO15422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14895-PA | 1710 | Pak3-RA | 1146..1707 | 580..19 | 2710 | 99.2 | Minus |
CG14895-PB | 1218 | Pak3-RB | 654..1215 | 580..19 | 2710 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pak3-RC | 4983 | CG14895-RC | 2057..2618 | 580..19 | 2750 | 99.3 | Minus |
Pak3-RD | 4983 | CG14895-RD | 2057..2618 | 580..19 | 2750 | 99.3 | Minus |
Pak3-RA | 3244 | CG14895-RA | 2057..2618 | 580..19 | 2750 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16451204..16451765 | 19..580 | 2750 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:46:58 has no hits.
BO15422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:26 Download gff for
BO15422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-PB | 654..1218 | 18..580 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:21 Download gff for
BO15422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14895-PB | 654..1218 | 18..580 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:56:52 Download gff for
BO15422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 2057..2623 | 11..580 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:11 Download gff for
BO15422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 2057..2623 | 11..580 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:11 Download gff for
BO15422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16451199..16451765 | 11..580 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:56:52 Download gff for
BO15422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12276921..12277487 | 11..580 | 98 | | Plus |
BO15422.5prime Sequence
773 bp (651 high quality bases) assembled on 2006-05-29
> BO15422.5prime
GAAGTTATCAGTCGACATGAGCTTCACCAAGTGGTTCAAGAAGAAGGGCG
GAGATGGGGGATCGATCTCAGAGATCGGTGCACCCACAAACTTCCAACGG
CACTTCCATGTCTCGCGCAACCAGGAAACCGGCGACCTGGAGGGGCTTCC
AGCTCCATGGGTGCGCCTAATGAACTCACAGATCACTCGCGATGAGCAGG
ACAAGAATCCAGATGCTGCCTACCATGCCGTTAAGTACTACAACTATTCG
ATTAAGAAGAAAGAGAACGAGGTCTTCAAGCCCTTCATCACCGAAGATGT
GATCCACGAGGAGTCCAAGGAGATAGAAAACTATGTCAACTACAAAAACA
AGCACAAGTCTCAGGATCCCGAAAAGTCCGACGACGATGGCAGTTCGACG
GCCACGGAGACGGAAAGTAGCAGCGGTTGTGGCTCCTCGGCAGGTAATAA
TAACAGCAGCAGCATCAACGACAGCAGCCAGCAGTCGACGGTGCCGCTGG
ACGCCCTAGAGGAGGTGTTCAAGGAGCTCAAGACCAATCTGGAGCACCGC
GAAACGCTGAAGGCCGCACCGCAAGAGCCTCCACCAGTACCGCCCAAGAA
ATCGCCCCACACCATACCGCCCAAACCGCAAATCAAGCCCAAACCTCGTG
TCACACACGAAGTTCTCACGCACTTCGGATATACGTCGAGATGAGGACTC
CAACAACCAGCACAAGATCAACACAGAACACAATCATTCATCAAGCCAGC
CGGAGGGGCCCAGGATGCTGGGA
BO15422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14895-PA | 1710 | Pak3-RA | 1..641 | 17..657 | 3180 | 99.8 | Plus |
CG14895-PB | 1218 | Pak3-RB | 1..282 | 17..298 | 1410 | 100 | Plus |
CG14895-PA | 1710 | Pak3-RA | 642..710 | 659..727 | 320 | 98.5 | Plus |
CG14895-PA | 1710 | Pak3-RA | 719..752 | 738..771 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pak3-RC | 4983 | CG14895-RC | 912..1663 | 17..771 | 3655 | 99.2 | Plus |
Pak3-RD | 4983 | CG14895-RD | 912..1663 | 17..771 | 3655 | 99.2 | Plus |
Pak3-RA | 3244 | CG14895-RA | 912..1663 | 17..771 | 3655 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16452159..16452910 | 771..17 | 3580 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-04 02:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..7034 | 449..750 | 120 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2478 | 437..478 | 116 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2380 | 446..483 | 114 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6784 | 449..484 | 114 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6805 | 449..484 | 114 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2374 | 444..483 | 107 | 77.5 | Plus |
BO15422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:27 Download gff for
BO15422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-PA | 1..752 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:22 Download gff for
BO15422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14895-PA | 1..752 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:40 Download gff for
BO15422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 912..1663 | 17..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:58 Download gff for
BO15422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 912..1663 | 17..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:58 Download gff for
BO15422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16452157..16452910 | 17..772 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:40 Download gff for
BO15422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12277879..12278632 | 17..772 | 99 | | Minus |
BO15422.complete Sequence
1741 bp assembled on 2008-11-10
GenBank Submission: KX798988
> BO15422.complete
GAAGTTATCAGTCGACATGAGCTTCACCAAGTGGTTCAAGAAGAAGGGCG
GAGATGGGGGATCGATCTCAGAGATCGGTGCACCCACAAACTTCCAACGG
CACTTCCATGTCTCGCGCAACCAGGAAACCGGCGACCTGGAGGGGCTTCC
AGCTCCATGGGTGCGCCTAATGAACTCACAGATCACTCGCGATGAGCAGG
ACAAGAATCCAGATGCTGCCTACCATGCCGTTAAGTACTACAACTATTCG
ATTAAGAAGAAAGAGAACGAGGTCTTCAAGCCCTTCATCACCGAAGATGT
GATCCACGAGGAGTCCAAGGAGATAGAAAACTATGTCAACTACAAAAACA
AGCACAAGTCTCAGGATCCCGAAAAGTCCGACGACGATGGCAGTTCGACG
GCCACGGAGACGGAAAGTAGCAGCGGTTGTGGCTCCTCGGCAGGTAATAG
TAACAGCAGCAGCATCAACGACAGCAGCCAGCAGTCGACGGTGCCGCTGG
ACGCCCTAGAGGAGGTGTTCAAGGAGCTCAAGACCAATCTGGAGCACCGC
GAAACGCTGAAGGCCGCACCGCAAGAGCCTCCACCAGTACCGCCCAAGAA
ATCGCCCCACACCATACCGCCCAAACCGCAAATCAAGCCCAAACCTCGTG
TCACACAGAAGTTCTCACGCACTTCGGATATACGTCGAGATGAGGACTCC
GACAACCAGCACAAGATCAACACAGACACAATCATCATCAAGCCAGCCGT
AGGGGCCCAGGATGCTGGAGCGGATGATAATCCCGACGAGACGATACTGC
GCCGCTCCAAGGAGAAGAGGGCCCAAAAAACCGATGCCGAAATCTACGTT
GAGCTGCGGGCAATTTGCAATTCAGATGACCCAAGGGAACGCTACAAGAC
CACCCAGGAGGTGGGCAAGGGAGCTTCTGGCATAGTTTTCATAGCCGCCG
ATTTGCAGAACGAATCGCAGGTGGCCGTCAAGACCATCGATATGAAGAAC
CAGTCCTCGAAGGATCTCATACTCACAGAAATCCGAGTGCTCAAGGACTT
CAACCACAAGAATCTGGTAAACTTTCTGGATGCCTACCTTCTGGAGCCCG
AGGACCAACTGTGGGTAGTCATGGAGTACATGGATGGCGGCCCATTGACT
GACGTCGTTACCGAGACTGTGATGAAGGAGCGCCAGATTGCCTGCGTCTG
CCGCGAGACACTCTACGCTATTAGTTTTCTGCACGCTAAGGGCATTATCC
ACCGGGACATCAAGTCAGACAACGTGCTGCTGGGCATGGATGGCAGTGTT
AAGGTGACGGACTTTGGGTTCTGCGCCAACATCGAGGGCGATGAGAAGCG
CCAGACAATGGTGGGAACGCCGTACTGGATGGCGCCCGAAGTGGTCACGC
GCAAGAAGTACGGCAAGAAGGTGGACATCTGGTCTATCGGCATCATGGCC
ATCGAGATGATCGAAGGCCAGCCACCCTACCTATACGAGACTCCACTCCG
CGCCCTCTACCTGATCGCCGCCAACGGTCGGCCGGATATCAAGAGCTGGG
ATAAGCTGAGTCCCAACCTTCAAGACTTTCTCGATCGCTGTCTCCAGGTG
GAGGTGGACCGAAGGGCCACCGCCGACGAGTTGCTCAGCCATCCGTTCCT
CAACGACTGCAGCGAGGTCAAGGCCCTCGTGCCCAACATCAAGGCGGCCA
AGAAGGTGCTCCGACGCAACGTAGCAAGCTTTCTAGACCAT
BO15422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pak3-RC | 1710 | CG14895-PC | 1..1707 | 17..1723 | 8520 | 99.9 | Plus |
Pak3-RD | 1752 | CG14895-PD | 1..1707 | 17..1723 | 8520 | 99.9 | Plus |
Pak3-RA | 1710 | CG14895-PA | 1..1707 | 17..1723 | 8520 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pak3-RC | 4983 | CG14895-RC | 912..2618 | 17..1723 | 8520 | 99.9 | Plus |
Pak3-RD | 4983 | CG14895-RD | 912..2618 | 17..1723 | 8520 | 99.9 | Plus |
Pak3-RA | 3244 | CG14895-RA | 912..2618 | 17..1723 | 8520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16451204..16452910 | 1723..17 | 8520 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:15:22 has no hits.
BO15422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:29 Download gff for
BO15422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 919..2630 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:59 Download gff for
BO15422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 912..2618 | 17..1725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:01 Download gff for
BO15422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 919..2625 | 17..1725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:40 Download gff for
BO15422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pak3-RA | 912..2618 | 17..1725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:40 Download gff for
BO15422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16451202..16452910 | 17..1725 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:59 Download gff for
BO15422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12276924..12278632 | 17..1725 | 99 | | Minus |
BO15422.pep Sequence
Translation from 16 to 1741
> BO15422.pep
MSFTKWFKKKGGDGGSISEIGAPTNFQRHFHVSRNQETGDLEGLPAPWVR
LMNSQITRDEQDKNPDAAYHAVKYYNYSIKKKENEVFKPFITEDVIHEES
KEIENYVNYKNKHKSQDPEKSDDDGSSTATETESSSGCGSSAGNSNSSSI
NDSSQQSTVPLDALEEVFKELKTNLEHRETLKAAPQEPPPVPPKKSPHTI
PPKPQIKPKPRVTQKFSRTSDIRRDEDSDNQHKINTDTIIIKPAVGAQDA
GADDNPDETILRRSKEKRAQKTDAEIYVELRAICNSDDPRERYKTTQEVG
KGASGIVFIAADLQNESQVAVKTIDMKNQSSKDLILTEIRVLKDFNHKNL
VNFLDAYLLEPEDQLWVVMEYMDGGPLTDVVTETVMKERQIACVCRETLY
AISFLHAKGIIHRDIKSDNVLLGMDGSVKVTDFGFCANIEGDEKRQTMVG
TPYWMAPEVVTRKKYGKKVDIWSIGIMAIEMIEGQPPYLYETPLRALYLI
AANGRPDIKSWDKLSPNLQDFLDRCLQVEVDRRATADELLSHPFLNDCSE
VKALVPNIKAAKKVLRRNVASFLDH
BO15422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pak3-PD | 583 | CG14895-PD | 1..575 | 1..575 | 2978 | 99.1 | Plus |
Pak3-PC | 569 | CG14895-PC | 1..569 | 1..569 | 2973 | 100 | Plus |
Pak3-PA | 569 | CG14895-PA | 1..569 | 1..569 | 2973 | 100 | Plus |
Pak-PJ | 704 | CG10295-PJ | 311..704 | 188..568 | 933 | 48.6 | Plus |
Pak-PE | 704 | CG10295-PE | 311..704 | 188..568 | 933 | 48.6 | Plus |