Clone BO15422 Report

Search the DGRC for BO15422

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptPak3-RA
Protein status:BO15422.pep: Imported from assembly
Sequenced Size:1741

Clone Sequence Records

BO15422.3prime Sequence

580 bp (508 high quality bases) assembled on 2006-05-29

> BO15422.3prime
ATGGTCTAGAAAGCTTGCTACGTTGCGTCGGAGCACCTTCTTGGCCGCCT
TGATGTTGGGCACGAGGGCCTTGACCTCGCTGCAGTCGTTGAGGAACGGA
TGGCTGAGCAACTCGTCGGCGGTGGCCCTTCGGTCCACCTCCACCTGGAG
ACAGCGATCGAGAAAGTCTTGAAGGTTGGGACTCAGCTTATCCCAGCTCT
TGATATCCGGCCGACCGTTGGCGGCGATCAGGTAGAGGGCGCGGAGTGGA
GTCTCGTATAGGTAGGGTGGCTGGCCTTCGATCATCTCGATGGCCATGAT
GCCGATAGACCAGATGTCCACCTTCTTGCCGTACTTCTTGCGCGTGACCA
CTTCGGGCGCCATCCAGTACGGCGTTCCCACCATTGTCTGGCGCTTCTCA
TCGCCCTCGATGTTGGCGCAGAACCCATAGTCCGTCACCTTAACACTGCC
ATCCATGCCCAGCAGCACGTTGTCTGACTTGATGTCCCGGTGGATAATGC
CCTTAGCGTGCTGAAAACTAATAGCGTAGAGTGTCTCGCGGTAGATGCAG
GCAATCTGGCGCTCCTTCATCACAGTCTCG

BO15422.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14895-PA 1710 Pak3-RA 1146..1707 580..19 2710 99.2 Minus
CG14895-PB 1218 Pak3-RB 654..1215 580..19 2710 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pak3-RC 4983 CG14895-RC 2057..2618 580..19 2750 99.3 Minus
Pak3-RD 4983 CG14895-RD 2057..2618 580..19 2750 99.3 Minus
Pak3-RA 3244 CG14895-RA 2057..2618 580..19 2750 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16451204..16451765 19..580 2750 99.3 Plus
Blast to na_te.dros performed on 2015-02-10 15:46:58 has no hits.

BO15422.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:26 Download gff for BO15422.3prime
Subject Subject Range Query Range Percent Splice Strand
Pak3-PB 654..1218 18..580 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:21 Download gff for BO15422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14895-PB 654..1218 18..580 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:56:52 Download gff for BO15422.3prime
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 2057..2623 11..580 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:11 Download gff for BO15422.3prime
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 2057..2623 11..580 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:11 Download gff for BO15422.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16451199..16451765 11..580 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:56:52 Download gff for BO15422.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12276921..12277487 11..580 98   Plus

BO15422.5prime Sequence

773 bp (651 high quality bases) assembled on 2006-05-29

> BO15422.5prime
GAAGTTATCAGTCGACATGAGCTTCACCAAGTGGTTCAAGAAGAAGGGCG
GAGATGGGGGATCGATCTCAGAGATCGGTGCACCCACAAACTTCCAACGG
CACTTCCATGTCTCGCGCAACCAGGAAACCGGCGACCTGGAGGGGCTTCC
AGCTCCATGGGTGCGCCTAATGAACTCACAGATCACTCGCGATGAGCAGG
ACAAGAATCCAGATGCTGCCTACCATGCCGTTAAGTACTACAACTATTCG
ATTAAGAAGAAAGAGAACGAGGTCTTCAAGCCCTTCATCACCGAAGATGT
GATCCACGAGGAGTCCAAGGAGATAGAAAACTATGTCAACTACAAAAACA
AGCACAAGTCTCAGGATCCCGAAAAGTCCGACGACGATGGCAGTTCGACG
GCCACGGAGACGGAAAGTAGCAGCGGTTGTGGCTCCTCGGCAGGTAATAA
TAACAGCAGCAGCATCAACGACAGCAGCCAGCAGTCGACGGTGCCGCTGG
ACGCCCTAGAGGAGGTGTTCAAGGAGCTCAAGACCAATCTGGAGCACCGC
GAAACGCTGAAGGCCGCACCGCAAGAGCCTCCACCAGTACCGCCCAAGAA
ATCGCCCCACACCATACCGCCCAAACCGCAAATCAAGCCCAAACCTCGTG
TCACACACGAAGTTCTCACGCACTTCGGATATACGTCGAGATGAGGACTC
CAACAACCAGCACAAGATCAACACAGAACACAATCATTCATCAAGCCAGC
CGGAGGGGCCCAGGATGCTGGGA

BO15422.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14895-PA 1710 Pak3-RA 1..641 17..657 3180 99.8 Plus
CG14895-PB 1218 Pak3-RB 1..282 17..298 1410 100 Plus
CG14895-PA 1710 Pak3-RA 642..710 659..727 320 98.5 Plus
CG14895-PA 1710 Pak3-RA 719..752 738..771 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pak3-RC 4983 CG14895-RC 912..1663 17..771 3655 99.2 Plus
Pak3-RD 4983 CG14895-RD 912..1663 17..771 3655 99.2 Plus
Pak3-RA 3244 CG14895-RA 912..1663 17..771 3655 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16452159..16452910 771..17 3580 99.2 Minus
Blast to na_te.dros performed 2015-02-04 02:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..7034 449..750 120 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2435..2478 437..478 116 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2380 446..483 114 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6784 449..484 114 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6805 449..484 114 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2374 444..483 107 77.5 Plus

BO15422.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:27 Download gff for BO15422.5prime
Subject Subject Range Query Range Percent Splice Strand
Pak3-PA 1..752 17..772 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:22 Download gff for BO15422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14895-PA 1..752 17..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:40 Download gff for BO15422.5prime
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 912..1663 17..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:58 Download gff for BO15422.5prime
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 912..1663 17..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:58 Download gff for BO15422.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16452157..16452910 17..772 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:40 Download gff for BO15422.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12277879..12278632 17..772 99   Minus

BO15422.complete Sequence

1741 bp assembled on 2008-11-10

GenBank Submission: KX798988

> BO15422.complete
GAAGTTATCAGTCGACATGAGCTTCACCAAGTGGTTCAAGAAGAAGGGCG
GAGATGGGGGATCGATCTCAGAGATCGGTGCACCCACAAACTTCCAACGG
CACTTCCATGTCTCGCGCAACCAGGAAACCGGCGACCTGGAGGGGCTTCC
AGCTCCATGGGTGCGCCTAATGAACTCACAGATCACTCGCGATGAGCAGG
ACAAGAATCCAGATGCTGCCTACCATGCCGTTAAGTACTACAACTATTCG
ATTAAGAAGAAAGAGAACGAGGTCTTCAAGCCCTTCATCACCGAAGATGT
GATCCACGAGGAGTCCAAGGAGATAGAAAACTATGTCAACTACAAAAACA
AGCACAAGTCTCAGGATCCCGAAAAGTCCGACGACGATGGCAGTTCGACG
GCCACGGAGACGGAAAGTAGCAGCGGTTGTGGCTCCTCGGCAGGTAATAG
TAACAGCAGCAGCATCAACGACAGCAGCCAGCAGTCGACGGTGCCGCTGG
ACGCCCTAGAGGAGGTGTTCAAGGAGCTCAAGACCAATCTGGAGCACCGC
GAAACGCTGAAGGCCGCACCGCAAGAGCCTCCACCAGTACCGCCCAAGAA
ATCGCCCCACACCATACCGCCCAAACCGCAAATCAAGCCCAAACCTCGTG
TCACACAGAAGTTCTCACGCACTTCGGATATACGTCGAGATGAGGACTCC
GACAACCAGCACAAGATCAACACAGACACAATCATCATCAAGCCAGCCGT
AGGGGCCCAGGATGCTGGAGCGGATGATAATCCCGACGAGACGATACTGC
GCCGCTCCAAGGAGAAGAGGGCCCAAAAAACCGATGCCGAAATCTACGTT
GAGCTGCGGGCAATTTGCAATTCAGATGACCCAAGGGAACGCTACAAGAC
CACCCAGGAGGTGGGCAAGGGAGCTTCTGGCATAGTTTTCATAGCCGCCG
ATTTGCAGAACGAATCGCAGGTGGCCGTCAAGACCATCGATATGAAGAAC
CAGTCCTCGAAGGATCTCATACTCACAGAAATCCGAGTGCTCAAGGACTT
CAACCACAAGAATCTGGTAAACTTTCTGGATGCCTACCTTCTGGAGCCCG
AGGACCAACTGTGGGTAGTCATGGAGTACATGGATGGCGGCCCATTGACT
GACGTCGTTACCGAGACTGTGATGAAGGAGCGCCAGATTGCCTGCGTCTG
CCGCGAGACACTCTACGCTATTAGTTTTCTGCACGCTAAGGGCATTATCC
ACCGGGACATCAAGTCAGACAACGTGCTGCTGGGCATGGATGGCAGTGTT
AAGGTGACGGACTTTGGGTTCTGCGCCAACATCGAGGGCGATGAGAAGCG
CCAGACAATGGTGGGAACGCCGTACTGGATGGCGCCCGAAGTGGTCACGC
GCAAGAAGTACGGCAAGAAGGTGGACATCTGGTCTATCGGCATCATGGCC
ATCGAGATGATCGAAGGCCAGCCACCCTACCTATACGAGACTCCACTCCG
CGCCCTCTACCTGATCGCCGCCAACGGTCGGCCGGATATCAAGAGCTGGG
ATAAGCTGAGTCCCAACCTTCAAGACTTTCTCGATCGCTGTCTCCAGGTG
GAGGTGGACCGAAGGGCCACCGCCGACGAGTTGCTCAGCCATCCGTTCCT
CAACGACTGCAGCGAGGTCAAGGCCCTCGTGCCCAACATCAAGGCGGCCA
AGAAGGTGCTCCGACGCAACGTAGCAAGCTTTCTAGACCAT

BO15422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pak3-RC 1710 CG14895-PC 1..1707 17..1723 8520 99.9 Plus
Pak3-RD 1752 CG14895-PD 1..1707 17..1723 8520 99.9 Plus
Pak3-RA 1710 CG14895-PA 1..1707 17..1723 8520 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
Pak3-RC 4983 CG14895-RC 912..2618 17..1723 8520 99.9 Plus
Pak3-RD 4983 CG14895-RD 912..2618 17..1723 8520 99.9 Plus
Pak3-RA 3244 CG14895-RA 912..2618 17..1723 8520 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16451204..16452910 1723..17 8520 99.9 Minus
Blast to na_te.dros performed on 2014-11-26 22:15:22 has no hits.

BO15422.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:29 Download gff for BO15422.complete
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 919..2630 17..1731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:59 Download gff for BO15422.complete
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 912..2618 17..1725 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:01 Download gff for BO15422.complete
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 919..2625 17..1725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:40 Download gff for BO15422.complete
Subject Subject Range Query Range Percent Splice Strand
Pak3-RA 912..2618 17..1725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:40 Download gff for BO15422.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16451202..16452910 17..1725 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:59 Download gff for BO15422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12276924..12278632 17..1725 99   Minus

BO15422.pep Sequence

Translation from 16 to 1741

> BO15422.pep
MSFTKWFKKKGGDGGSISEIGAPTNFQRHFHVSRNQETGDLEGLPAPWVR
LMNSQITRDEQDKNPDAAYHAVKYYNYSIKKKENEVFKPFITEDVIHEES
KEIENYVNYKNKHKSQDPEKSDDDGSSTATETESSSGCGSSAGNSNSSSI
NDSSQQSTVPLDALEEVFKELKTNLEHRETLKAAPQEPPPVPPKKSPHTI
PPKPQIKPKPRVTQKFSRTSDIRRDEDSDNQHKINTDTIIIKPAVGAQDA
GADDNPDETILRRSKEKRAQKTDAEIYVELRAICNSDDPRERYKTTQEVG
KGASGIVFIAADLQNESQVAVKTIDMKNQSSKDLILTEIRVLKDFNHKNL
VNFLDAYLLEPEDQLWVVMEYMDGGPLTDVVTETVMKERQIACVCRETLY
AISFLHAKGIIHRDIKSDNVLLGMDGSVKVTDFGFCANIEGDEKRQTMVG
TPYWMAPEVVTRKKYGKKVDIWSIGIMAIEMIEGQPPYLYETPLRALYLI
AANGRPDIKSWDKLSPNLQDFLDRCLQVEVDRRATADELLSHPFLNDCSE
VKALVPNIKAAKKVLRRNVASFLDH

BO15422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Pak3-PD 583 CG14895-PD 1..575 1..575 2978 99.1 Plus
Pak3-PC 569 CG14895-PC 1..569 1..569 2973 100 Plus
Pak3-PA 569 CG14895-PA 1..569 1..569 2973 100 Plus
Pak-PJ 704 CG10295-PJ 311..704 188..568 933 48.6 Plus
Pak-PE 704 CG10295-PE 311..704 188..568 933 48.6 Plus