Clone Sequence Records
BO15424.3prime Sequence
788 bp (769 high quality bases) assembled on 2006-05-29
> BO15424.3prime
ATGGTCTAGAAAGCTTGCGCGGAACTCGGGCGCATCATCTTGCGTTATGT
CACCGTACTTCCAGATGGCCAGATGCGCGACCCGAGCTGCTTCCTGCGCG
GCTTTGTACTGGTCCACTAGTTCCTTGAGCTTCCGCTCTCCACGCTGTTC
GGCCAGAACAAGGCCCTCGGCTACAAGCTGCTTTCCAAAATCGACTTTAG
TAGTTGGATCGCGAAGAGTGGCCAAGTTCGGCGACCCAGTCACCTTTAGC
TCGACATTGAGTTGAACCTTATGGTTCAAAACGTCTTCGGAAAAGGCACG
CAAGGCTTCTTCCTTATCTTCGTTGTCAGTTGGCAGGGCGACTAAGGCCA
AAGCATACTCCGTAGCGTAGGGCTTTTCGCTGCTGAAGGCTGGTGGCAGG
GCTGCCAAACGGTTGGTCGGAAGTGTCTCCTTGTTTCCATAATCGATGTA
CAGGACTGTAGCATTACTGCCCTGCACGCGTTCCACCTTGGCACGATACC
ACTGATTATCAAGTGTAAACTGAGCGGCCACCAGGTCACCACGCTTTGGC
GTGTACGATCCAGCGATGGGTGGGTTGGACTGGAAATCGGCGTGAAGTTT
GCTCATAAGCGACTCTAGCTTGGATCCGCTCTCCACAGATTGCGCGAAGA
ATGTCAGAGTTTCGGTGATCTCAGTGACAATAACGTTTTCGTAGTTGACT
TTACGCTCCGCCACTACCTTGTCCTCCTTTTCTTCCTCGGTGACAGTTTT
TTCTTTAGGCACTTCTTCTACGTAGTTTGTCCAGATGT
BO15424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7008-PA | 2781 | Tudor-SN-RA | 2009..2778 | 788..19 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 2179..2948 | 788..19 | 3850 | 100 | Minus |
| Tudor-SN-RA | 3159 | CG7008-RA | 2179..2948 | 788..19 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 259506..259915 | 19..428 | 2050 | 100 | Plus |
| 3L | 28110227 | 3L | 260311..260672 | 427..788 | 1810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:02:19 has no hits.
BO15424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:28 Download gff for
BO15424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 2009..2781 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:23 Download gff for
BO15424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 2009..2781 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:02 Download gff for
BO15424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 2179..2951 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:39:30 Download gff for
BO15424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 2179..2951 | 15..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:39:30 Download gff for
BO15424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 259502..259913 | 15..426 | 99 | <- | Plus |
| 3L | 260311..260672 | 427..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:02 Download gff for
BO15424.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 259502..259913 | 15..426 | 99 | <- | Plus |
| arm_3L | 260311..260672 | 427..788 | 100 | | Plus |
BO15424.5prime Sequence
881 bp (739 high quality bases) assembled on 2006-05-29
> BO15424.5prime
GAAGTTATCAGTCGACATGGCAACAGCAGCGAACACCGCGACAGCTGCCG
GAGCAGCTAAAGACGCCCCGCCAGCGCCTACAAAGTCGTTGTCCGGCATT
GTAAAGCAGGTTCTCTCCGGCGATACGGTAGTTATTCGCGCAACTAAGGG
TGCCCCGCCTCCGGAGAAACAAATTACTTTCTCGCATGTCCTTGCCCCGA
AGTTGGCCCGTCGTCCTGGCGCTGGCGGAGACGAGACCAAGGACGAGCCC
TGGGCTTGGGAGTCGCGGGAATTCTTGCGTAAAAAGTTGATAGGTGTGGA
GGTGACTTTCACGTTTGACAAGCCAGCCAACTCGAACCGGGAGTACGGTT
TTGTGTGGATCGGTAAGGACAAGGAAACCGGTGAAAATGTGGTCGAGTCG
ATTGTCCGAGAGGGCCTGGTGTCGGTCCGTCGAGAGGGACGTCCCACAGC
CGAGCAGCAAACACTCATCGAGTTGGAGGACCAGGCGCGTGCAGCAGGCC
GCGGAAAATGGTCGCCCACCGCAAGTGCCGCCGACAAGGTTCGCAACATC
AAGTGGTCCCATGAGAATCCCGCACACCTGGTCGACATCTACGGAGGAAA
CCCCGTGAAGGCGATCATCGAGCACGTGCGCGATGGATCCACGGTCCGAG
CATTCTTGCTGCCGGACTTCCACTACATAACGCTAATGATTTCGGGCATC
CGTTGTCCAGGAGTGAAATTAGATGCTGATGGCAAGCCCGACCTCAGTGT
AAAGGTGCCTTTTGCTGACGAAGCTCGCTACTATGTGGAAACCCGCCTGT
TGCAACGCGATGTGGAAATCCGACTGGAATCGGTTAACACTCTAACTTCA
TTGGAACTATTCTGTATCCCAAAGGGAACAT
BO15424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7008-PA | 2781 | Tudor-SN-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
| CG7008-PA | 2781 | Tudor-SN-RA | 824..857 | 839..872 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 171..1036 | 17..881 | 4275 | 99.7 | Plus |
| Tudor-SN-RA | 3159 | CG7008-RA | 171..1036 | 17..881 | 4275 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 262046..262821 | 881..107 | 3800 | 99.6 | Minus |
| 3L | 28110227 | 3L | 264116..264210 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:57:09 has no hits.
BO15424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:29 Download gff for
BO15424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 1..866 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:25 Download gff for
BO15424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7008-PA | 1..866 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:43 Download gff for
BO15424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..1036 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:11 Download gff for
BO15424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..1036 | 17..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:11 Download gff for
BO15424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 262046..262818 | 110..881 | 99 | <- | Minus |
| 3L | 264118..264210 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:43 Download gff for
BO15424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 264118..264210 | 17..109 | 100 | | Minus |
| arm_3L | 262046..262818 | 110..881 | 99 | <- | Minus |
BO15424.complete Sequence
2812 bp assembled on 2006-10-11
GenBank Submission: FJ633454
> BO15424.complete
GAAGTTATCAGTCGACATGGCAACAGCAGCGAACACCGCGACAGCTGCCG
GAGCAGCTAAAGACGCCCCGCCAGCGCCTACAAAGTCGTTGTCCGGCATT
GTAAAGCAGGTTCTCTCCGGCGATACGGTAGTTATTCGCGCAACTAAGGG
TGCCCCGCCTCCGGAGAAACAAATTACTTTCTCGCATGTCCTTGCCCCGA
AGTTGGCCCGTCGTCCTGGCGCTGGCGGAGACGAGACCAAGGACGAGCCC
TGGGCTTGGGAGTCGCGGGAATTCTTGCGTAAAAAGTTGATAGGTGTGGA
GGTGACTTTCACGTTTGACAAGCCAGCCAACTCGAACCGGGAGTACGGTT
TTGTGTGGATCGGTAAGGACAAGGAAACCGGTGAAAATGTGGTCGAGTCG
ATTGTCCGAGAGGGCCTGGTGTCGGTCCGTCGAGAGGGACGTCCCACAGC
CGAGCAGCAAACACTCATCGAGTTGGAGGACCAGGCGCGTGCAGCAGGCC
GCGGAAAATGGTCGCCCACCGCAAGTGCCGCCGACAAGGTTCGCAACATC
AAGTGGTCCCATGAGAATCCCGCACACCTGGTCGACATCTACGGAGGAAA
CCCCGTGAAGGCGATCATCGAGCACGTGCGCGATGGATCCACGGTCCGAG
CATTCTTGCTGCCGGACTTCCACTACATAACGCTAATGATTTCGGGCATC
CGTTGTCCAGGAGTGAAATTAGATGCTGATGGCAAGCCCGACCTCAGTGT
AAAGGTGCCTTTTGCTGACGAAGCTCGCTACTATGTGGAAACCCGCCTGT
TGCAACGCGATGTGGAAATCCGACTGGAATCGGTTAACAACTCTAACTTC
ATTGGAACTATTCTGTATCCCAAGGGAAACATTGCAGAATCACTCCTGCG
AGAGGGACTTGCCAAGTGTGTGGACTGGTCAATGGCTGTTATGAAGACAG
GCACCGATAAACTGCGGGCTGCGGAGCGTTTTGCCAAGGAGAAGCGTCTT
CGCCAATGGCAGGACTACCAAGCTAAAACTCCTGCTTTCAACTCGAAGGA
GAAAGACTTCTCTGGAACAGTGGTGGAAGTCTTCAATGGCGATGCTATTA
ATGTACGTCTTTCCAATGGACAAGTAAAGAAGGTTTTCTTCTCGTCTATC
AGGCCGCCGCGTGACCAACGCGCGGTTGTTGGCACCGATGGCGAGGAAAT
CGTCAAGGCACCACCACGCGGAAAAAACTACAGACCACTTTACGAAATTC
CACACATGTTCGATGCCCGTGAGTTTCTGCGTAAAAAACTAATTAATAAA
AAAGTTCAATGCAACCTGGACTACATCTCACCGCCGCGCGAAAACTTCCC
TGAGAAATACTGCTATACCGTCTCTATTGGCGGTCAGAACGTGGCTGAGG
CAATGGTAGCCAAAGGTTTGGCAACATGTGTTCGCTATCGCCAGGACGAC
GATCAGAGATCTTCCGCCTATGATCAATTGATTGCCGCCGAACAGCAAGC
CATCAAGGGACTAAAGGGACTGCACGCAAAGAAGGATAACGCCACACTGC
GTGTTAACGACCTGACTGTTGATCATTCCCGAATTAAAGTTCAATACTTG
CCATCGTGGCAGCGTGCTTTGCGTACTGAAGCCATTGTAGAGTTTGTCGC
CAGCGGATCCCGCCTCCGAATCTTTGTACCGAAGGACAGTTGCCTGGTAA
CATTCCTGCTTGCTGGGATTTCATGTCCGCGTTCCTCTCGTCCAGCGCTT
AATGGCGTTCCTGCCCAAGAGGGGGAACCATTTGGCGACGAGGCTTTGAC
CTTTACCAGGGAGCGTGTCTTGCAACGCGACGTTTCTGTTCATATCGATA
CCACCGACAAGGCAGGATCTTCAGTGATTGGTTGGCTCTGGACGGACAGC
GGCGCCAACTTGTCAGTTGCTCTTGTCGAAGAGGGTCTTGCTGAAGTGCA
CTTTAGTGCTGAAAAATCTGAATACTACCGCCAGTTGAAGATTGCTGAAG
ACCGTGCCAAGGCCGCCAAAAAGAACATCTGGACAAACTACGTAGAAGAA
GTGCCTAAAGAAAAAACTGTCACCGAGGAAGAAAAGGAGGACAAGGTAGT
GGCGGAGCGTAAAGTCAACTACGAAAACGTTATTGTCACTGAGATCACCG
AAACTCTGACATTCTTCGCGCAATCTGTGGAGAGCGGATCCAAGCTAGAG
TCGCTTATGAGCAAACTTCACGCCGATTTCCAGTCCAACCCACCCATCGC
TGGATCGTACACGCCAAAGCGTGGTGACCTGGTGGCCGCTCAGTTTACAC
TTGATAATCAGTGGTATCGTGCCAAGGTGGAACGCGTGCAGGGCAGTAAT
GCTACAGTCCTGTACATCGATTATGGAAACAAGGAGACACTTCCGACCAA
CCGTTTGGCAGCCCTGCCACCAGCCTTCAGCAGCGAAAAGCCCTACGCTA
CGGAGTATGCTTTGGCCTTAGTCGCCCTGCCAACTGACAACGAAGATAAG
GAAGAAGCCTTGCGTGCCTTTTCCGAAGACGTTTTGAACCATAAGGTTCA
ACTCAATGTCGAGCTAAAGGTGACTGGGTCGCCGAACTTGGCCACTCTTC
GCGATCCAACTACTAAAGTCGATTTTGGAAAGCAGCTTGTAGCCGAGGGC
CTTGTTCTGGCCGAACAGCGTGGAGAGCGGAAGCTCAAGGAACTAGTGGA
CCAGTACAAAGCCGCGCAGGAAGCAGCTCGGGTCGCGCATCTGGCCATCT
GGAAGTACGGTGACATAACGCAAGATGATGCGCCCGAGTTCCGCGCAAGC
TTTCTAGACCAT
BO15424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 2781 | CG7008-PB | 1..2778 | 17..2794 | 13890 | 100 | Plus |
| Tudor-SN-RA | 2781 | CG7008-PA | 1..2778 | 17..2794 | 13890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 171..2948 | 17..2794 | 13890 | 100 | Plus |
| Tudor-SN-RA | 3159 | CG7008-RA | 171..2948 | 17..2794 | 13890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 260311..261749 | 2386..948 | 7195 | 100 | Minus |
| 3L | 28110227 | 3L | 261977..262821 | 951..107 | 4225 | 100 | Minus |
| 3L | 28110227 | 3L | 259506..259915 | 2794..2385 | 2050 | 100 | Minus |
| 3L | 28110227 | 3L | 264116..264210 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:38:25 has no hits.
BO15424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:04 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 1..2781 | 17..2798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:30 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 169..2949 | 17..2798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:24:53 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..2948 | 17..2796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:04 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 169..2949 | 17..2798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:04 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..2948 | 17..2796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:04 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 259504..259913 | 2387..2796 | 99 | <- | Minus |
| 3L | 260311..261746 | 951..2386 | 100 | <- | Minus |
| 3L | 261978..262818 | 110..950 | 100 | <- | Minus |
| 3L | 264118..264210 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:24:53 Download gff for
BO15424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 259504..259913 | 2387..2796 | 99 | <- | Minus |
| arm_3L | 260311..261746 | 951..2386 | 100 | <- | Minus |
| arm_3L | 261978..262818 | 110..950 | 100 | <- | Minus |
| arm_3L | 264118..264210 | 17..109 | 100 | | Minus |
BO15424.pep Sequence
Translation from 16 to 2812
> BO15424.pep
MATAANTATAAGAAKDAPPAPTKSLSGIVKQVLSGDTVVIRATKGAPPPE
KQITFSHVLAPKLARRPGAGGDETKDEPWAWESREFLRKKLIGVEVTFTF
DKPANSNREYGFVWIGKDKETGENVVESIVREGLVSVRREGRPTAEQQTL
IELEDQARAAGRGKWSPTASAADKVRNIKWSHENPAHLVDIYGGNPVKAI
IEHVRDGSTVRAFLLPDFHYITLMISGIRCPGVKLDADGKPDLSVKVPFA
DEARYYVETRLLQRDVEIRLESVNNSNFIGTILYPKGNIAESLLREGLAK
CVDWSMAVMKTGTDKLRAAERFAKEKRLRQWQDYQAKTPAFNSKEKDFSG
TVVEVFNGDAINVRLSNGQVKKVFFSSIRPPRDQRAVVGTDGEEIVKAPP
RGKNYRPLYEIPHMFDAREFLRKKLINKKVQCNLDYISPPRENFPEKYCY
TVSIGGQNVAEAMVAKGLATCVRYRQDDDQRSSAYDQLIAAEQQAIKGLK
GLHAKKDNATLRVNDLTVDHSRIKVQYLPSWQRALRTEAIVEFVASGSRL
RIFVPKDSCLVTFLLAGISCPRSSRPALNGVPAQEGEPFGDEALTFTRER
VLQRDVSVHIDTTDKAGSSVIGWLWTDSGANLSVALVEEGLAEVHFSAEK
SEYYRQLKIAEDRAKAAKKNIWTNYVEEVPKEKTVTEEEKEDKVVAERKV
NYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTP
KRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAAL
PPAFSSEKPYATEYALALVALPTDNEDKEEALRAFSEDVLNHKVQLNVEL
KVTGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAA
QEAARVAHLAIWKYGDITQDDAPEFRASFLDH
BO15424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-PB | 926 | CG7008-PB | 1..926 | 1..926 | 4758 | 100 | Plus |
| Tudor-SN-PA | 926 | CG7008-PA | 1..926 | 1..926 | 4758 | 100 | Plus |
