Clone Sequence Records
BO15425.3prime Sequence
618 bp (575 high quality bases) assembled on 2006-05-29
> BO15425.3prime
ATGGTCTAGAAAGCTTGCCAAGTAAATGCGAAAGAATTGACGTGCGGTCA
GCTTCTTGTTGCATATTGGGCACTTGTGCGTAGCTCTGATGGCTGTTTCG
ATGCATTCGCGGCAGAAGACGTGTCCACATTTGGTTGACACTGGCTCGCG
CTTCGATACACTGTCCATGCAGATGGGGCACTTGTATAACTCCTCTTTTT
GGGACTCATCAATGTCGCGATTAACGCGTTTTGGTGGCGACGCAACGTCG
AGATCCACTACCGGGTCATTTTCGGCTGACCGACGTGGCAGAATGGTGAG
GGAGTCGTTGGAGTGAAGATTCACTGTGCGACTTCTTGGGCCTTCGGGGG
TGCATAGATCGATGAAAGCATCGGGATCACGATTCCGAGCGGATCGAACA
GGTGGTGCACGGTCCAAATGGGACAGATCTATCACTTCTACTGGACTCGT
TCTGCGGCGAATTCTACGAGTTGTTGGCGTTGAGGTTCTCGTGGCGAAGG
TGTCAATCTGTGCCACAACTTCCTCGCAGTAGCGATTCATGCGATCCAAC
TCTGCTTCCATCTGGATCACATCCTGGGTAAGTGATCTGATCTGCGAATG
AGCATCTTCAGTCGAGAC
BO15425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10981-PA | 960 | CG10981-RA | 358..957 | 618..19 | 3000 | 100 | Minus |
CG10981-PB | 939 | CG10981-RB | 337..936 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RB | 1611 | CG10981-RB | 671..1270 | 618..19 | 3000 | 100 | Minus |
dgrn-RA | 1632 | CG10981-RA | 692..1291 | 618..19 | 3000 | 100 | Minus |
dgrn-RD | 1635 | CG10981-RD | 695..1294 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825805..5826235 | 449..19 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 5825499..5825588 | 539..450 | 450 | 100 | Minus |
3R | 32079331 | 3R | 5825366..5825444 | 618..540 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:36:56 has no hits.
BO15425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:30 Download gff for
BO15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PB | 337..939 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:26 Download gff for
BO15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PB | 337..939 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:30 Download gff for
BO15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 702..1310 | 8..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:12:18 Download gff for
BO15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RD | 695..1303 | 8..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:12:18 Download gff for
BO15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5825366..5825444 | 540..618 | 100 | -> | Minus |
3R | 5825499..5825588 | 450..539 | 100 | -> | Minus |
3R | 5825805..5826244 | 8..449 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:30 Download gff for
BO15425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1651088..1651166 | 540..618 | 100 | -> | Minus |
arm_3R | 1651221..1651310 | 450..539 | 100 | -> | Minus |
arm_3R | 1651527..1651966 | 8..449 | 99 | | Minus |
BO15425.5prime Sequence
834 bp (719 high quality bases) assembled on 2006-05-29
> BO15425.5prime
GAAGTTATCAGTCGACATGTCAGATTCGACTATTTTCCGTTTTAACTCAT
CCATTCTTGATCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAAT
TCCAGTGTATCCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAA
TTCGGGACACAATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATT
CATCCGCTGATTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGT
GATTTATCTGTGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATC
TTCAGTCGGAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACC
CCTTAAATATGGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAG
ATCAGATCACTTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCG
CATGAATCGCTACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCA
CGAGAACCTCAACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCA
GTAGAAGTGATAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATC
CGCTCGGAATCGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAG
GCCCAAGAAGTCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATT
CTGCCACGTCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGC
GTCGCCACCAAAACGCGTTATTCGCGACATTGATGAGTCCCCAAAAGAGG
AGTTATACAAGTGCCCATTCTGCATGGACAGGGT
BO15425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10981-PA | 960 | CG10981-RA | 1..815 | 17..831 | 3975 | 99.5 | Plus |
CG10981-PB | 939 | CG10981-RB | 28..794 | 65..831 | 3735 | 99.4 | Plus |
CG10981-PB | 939 | CG10981-RB | 1..27 | 17..43 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 1632 | CG10981-RA | 335..1149 | 17..831 | 4015 | 99.5 | Plus |
dgrn-RD | 1635 | CG10981-RD | 335..1152 | 17..831 | 3975 | 99.1 | Plus |
dgrn-RB | 1611 | CG10981-RB | 362..1128 | 65..831 | 3775 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825036..5825444 | 44..452 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 5825805..5826093 | 543..831 | 1385 | 98.6 | Plus |
3R | 32079331 | 3R | 5825499..5825588 | 453..542 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:10:26 has no hits.
BO15425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:31 Download gff for
BO15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:28 Download gff for
BO15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:59 Download gff for
BO15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 338..1162 | 12..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:35 Download gff for
BO15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 328..1152 | 12..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:35 Download gff for
BO15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5824942..5824975 | 12..43 | 94 | -> | Plus |
3R | 5825036..5825444 | 44..452 | 100 | -> | Plus |
3R | 5825499..5825588 | 453..542 | 100 | -> | Plus |
3R | 5825805..5826096 | 543..834 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:59 Download gff for
BO15425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650664..1650697 | 12..43 | 94 | -> | Plus |
arm_3R | 1650758..1651166 | 44..452 | 100 | -> | Plus |
arm_3R | 1651221..1651310 | 453..542 | 100 | -> | Plus |
arm_3R | 1651527..1651818 | 543..834 | 98 | | Plus |
BO15425.complete Sequence
991 bp (991 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633455
> BO15425.complete
GAAGTTATCAGTCGACATGTCAGATTCGACTATTTTCCGTTTTAACTCAT
CCATTCTTGATCAGTCAGCGGACAGCAACGTATCCAGTTCGAGCTCCAAT
TCCAGTGTATCCGACTCTTCTGTGGACTCCCATTCATCCATAGAATCCAA
TTCGGGACACAATACATCCGTGGAATCTCAGTCATCCGCGGAATCTGATT
CATCCGCTGATTCCCATTCGTCCTTGGAACGCCCATCCCCAGTGGAGCGT
GATTTATCTGTGGAATCAGACTCATCTTCAGCCACCAATACCAGCGAATC
TTCAGTCGGAGAAGCTTCAAACCAACTGCAGTCACCGCAAAGCAATAACC
CCTTAAATATGGCTAACTTGTCTGTCTCGACTGAAGATGCTCATTCGCAG
ATCAGATCACTTACCCAGGATGTGATCCAGATGGAAGCAGAGTTGGATCG
CATGAATCGCTACTGCGAGGAAGTTGTGGCACAGATTGACACCTTCGCCA
CGAGAACCTCAACGCCAACAACTCGTAGAATTCGCCGCAGAACGAGTCCA
GTAGAAGTGATAGATCTGTCCCATTTGGACCGTGCACCACCTGTTCGATC
CGCTCGGAATCGTGATCCCGATGCTTTCATCGATCTATGCACCCCCGAAG
GCCCAAGAAGTCGCACAGTGAATCTTCACTCCAACGACTCCCTCACCATT
CTGCCACGTCGGTCAGCCGAAAATGACCCGGTAGTGGATCTCGACGTTGC
GTCGCCACCAAAACGCGTTAATCGCGACATTGATGAGTCCCAAAAAGAGG
AGTTATACAAGTGCCCCATCTGCATGGACAGTGTATCGAAGCGCGAGCCA
GTGTCAACCAAATGTGGACACGTCTTCTGCCGCGAATGCATCGAAACAGC
CATCAGAGCTACGCACAAGTGCCCAATATGCAACAAGAAGCTGACCGCAC
GTCAATTCTTTCGCATTTACTTGGCAAGCTTTCTAGACCAT
BO15425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 960 | CG10981-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
dgrn-RB | 939 | CG10981-PB | 28..936 | 65..973 | 4545 | 100 | Plus |
dgrn-RD | 618 | CG10981-PD | 1..615 | 359..973 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-RA | 1632 | CG10981-RA | 335..1291 | 17..973 | 4785 | 100 | Plus |
dgrn-RD | 1635 | CG10981-RD | 335..1294 | 17..973 | 4720 | 99.7 | Plus |
dgrn-RB | 1611 | CG10981-RB | 362..1270 | 65..973 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5825805..5826235 | 543..973 | 2155 | 100 | Plus |
3R | 32079331 | 3R | 5825036..5825444 | 44..452 | 2045 | 100 | Plus |
3R | 32079331 | 3R | 5825499..5825588 | 453..542 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:44 has no hits.
BO15425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:36 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:46 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RA | 338..1310 | 12..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:08:30 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 345..1301 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:36 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10981-RA | 338..1310 | 12..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:51 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dgrn-RA | 335..1291 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:51 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5824949..5824975 | 17..43 | 100 | -> | Plus |
3R | 5825036..5825444 | 44..452 | 100 | -> | Plus |
3R | 5825499..5825588 | 453..542 | 100 | -> | Plus |
3R | 5825805..5826235 | 543..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:08:30 Download gff for
BO15425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1650671..1650697 | 17..43 | 100 | -> | Plus |
arm_3R | 1650758..1651166 | 44..452 | 100 | -> | Plus |
arm_3R | 1651221..1651310 | 453..542 | 100 | -> | Plus |
arm_3R | 1651527..1651957 | 543..975 | 99 | | Plus |
BO15425.pep Sequence
Translation from 16 to 991
> BO15425.pep
MSDSTIFRFNSSILDQSADSNVSSSSSNSSVSDSSVDSHSSIESNSGHNT
SVESQSSAESDSSADSHSSLERPSPVERDLSVESDSSSATNTSESSVGEA
SNQLQSPQSNNPLNMANLSVSTEDAHSQIRSLTQDVIQMEAELDRMNRYC
EEVVAQIDTFATRTSTPTTRRIRRRTSPVEVIDLSHLDRAPPVRSARNRD
PDAFIDLCTPEGPRSRTVNLHSNDSLTILPRRSAENDPVVDLDVASPPKR
VNRDIDESQKEELYKCPICMDSVSKREPVSTKCGHVFCRECIETAIRATH
KCPICNKKLTARQFFRIYLASFLDH
BO15425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dgrn-PA | 319 | CG10981-PA | 1..319 | 1..319 | 1617 | 100 | Plus |
dgrn-PB | 312 | CG10981-PB | 1..312 | 1..319 | 1566 | 97.8 | Plus |
dgrn-PD | 205 | CG10981-PD | 1..205 | 115..319 | 1070 | 100 | Plus |
CG43058-PA | 100 | CG43058-PA | 10..100 | 194..319 | 214 | 35.7 | Plus |
elfless-PC | 229 | CG15150-PC | 42..229 | 156..319 | 183 | 30.7 | Plus |