Clone Sequence Records
BO15427.3prime Sequence
712 bp (686 high quality bases) assembled on 2006-05-29
> BO15427.3prime
ATGGTCTAGAAAGCTTGCCTGGCTTTGGAAGGACAGCCAGCGAAAAACAC
AAGAACGATGTATTAAAAGACCAACTGTGGCCAATATTTGGAGATGCAGG
ACCGCAATGGCTTCTAATGCCTGCAATAACGAGTAATTGGCCCTGACTGT
TCTGCGTCCCCTGGCGAAGATTGAGCTCCATGGCACGGAAGGCCCAAATA
TCGAGGGTACGCGCCTGCTAACACACACGATGCACTCTTCTTTGAGGTGG
AGGATGCTTATGCTTACTTTGTGTTCAATGGTGGTCTGCTGGTTCTTGTC
CAGGTGCACCTTGACCAGCTGGGAGCCGTCGAGCTTGACGCGGATGCGCT
TGCCCACAATCTCGGCGGGGAAGACCAGATCCTCAAGGATGGCGTCGTAC
ACAGCGGTCAGAGTCCTGGAGCGTGGACGCTTCTGCTTGAGGGGGTTGCG
GGCCTTGCGCGTGGGCTTGGGCAGGATCTTGCGCTCCGCAATCACGACGA
CGTGCTTGCCCGAGAACTTCTTCTCCAGCTCGCGGACCAGGATGATCTGG
ATCTTCTGGAACACCTTCTGCTGTGGAATGGGCACGTAGATGATGACGGC
CTTCTTGCTGCCGAACTCGATCTCGCGGGCACGGGTGATGTGCAGATCGC
GCAGGTAGGGCTTCAGGTCGCTGTTGGCCTCGAGTTCCACCACGCCTGGG
CAATGGACTTCT
BO15427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PB | 753 | RpS7-RB | 77..750 | 692..19 | 3320 | 99.7 | Minus |
CG1883-PD | 585 | RpS7-RD | 77..503 | 692..266 | 2110 | 99.7 | Minus |
CG1883-PA | 585 | RpS7-RA | 77..503 | 692..266 | 2110 | 99.7 | Minus |
CG1883-PC | 585 | RpS7-RC | 77..503 | 692..266 | 2110 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 93..540 | 712..266 | 2200 | 99.6 | Minus |
RpS7-RC | 978 | CG1883-RC | 341..788 | 712..266 | 2200 | 99.6 | Minus |
RpS7-RA | 725 | CG1883-RA | 88..535 | 712..266 | 2200 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30207844..30208427 | 19..602 | 2890 | 99.7 | Plus |
3R | 32079331 | 3R | 30208489..30208602 | 600..712 | 520 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:50:35 has no hits.
BO15427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:35 Download gff for
BO15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-PB | 56..753 | 16..712 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:32 Download gff for
BO15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PB | 56..753 | 16..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:52 Download gff for
BO15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 88..535 | 266..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:42 Download gff for
BO15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 88..535 | 266..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:42 Download gff for
BO15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30208490..30208602 | 601..712 | 99 | | Plus |
3R | 30207844..30208425 | 19..600 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:52 Download gff for
BO15427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26033566..26034147 | 19..600 | 99 | <- | Plus |
arm_3R | 26034212..26034324 | 601..712 | 99 | | Plus |
BO15427.5prime Sequence
782 bp (781 high quality bases) assembled on 2006-05-29
> BO15427.5prime
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGGCAAGCTTTCTAGACC
BO15427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1883-PB | 753 | RpS7-RB | 1..750 | 17..766 | 3700 | 99.7 | Plus |
CG1883-PD | 585 | RpS7-RD | 1..503 | 17..519 | 2490 | 99.8 | Plus |
CG1883-PA | 585 | RpS7-RA | 1..503 | 17..519 | 2490 | 99.8 | Plus |
CG1883-PC | 585 | RpS7-RC | 1..503 | 17..519 | 2490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..540 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..788 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..535 | 17..519 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30207844..30208427 | 766..183 | 2890 | 99.7 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:50:16 has no hits.
BO15427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:36 Download gff for
BO15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:33 Download gff for
BO15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1883-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:31 Download gff for
BO15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..535 | 10..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:25 Download gff for
BO15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 22..535 | 10..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:25 Download gff for
BO15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30207844..30208425 | 185..766 | 99 | <- | Minus |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:31 Download gff for
BO15427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26033566..26034147 | 185..766 | 99 | <- | Minus |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
BO15427.complete Sequence
784 bp (784 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633457
> BO15427.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGGCAAGCTTTCTAGACCAT
BO15427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 585 | CG1883-PE | 1..503 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RC | 585 | CG1883-PC | 1..503 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RA | 585 | CG1883-PA | 1..503 | 17..519 | 2500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-RE | 813 | CG1883-RE | 38..540 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RC | 978 | CG1883-RC | 286..788 | 17..519 | 2500 | 99.8 | Plus |
RpS7-RA | 725 | CG1883-RA | 33..535 | 17..519 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30207844..30208427 | 766..183 | 2890 | 99.7 | Minus |
3R | 32079331 | 3R | 30208489..30208657 | 185..17 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:12:00 has no hits.
BO15427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:44 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:01 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RB | 16..779 | 10..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:29 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..535 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:44 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RB | 16..779 | 10..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:34 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS7-RA | 33..535 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:34 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30208490..30208657 | 17..184 | 100 | | Minus |
3R | 30207841..30208425 | 185..768 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:29 Download gff for
BO15427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26034212..26034379 | 17..184 | 100 | | Minus |
arm_3R | 26033563..26034147 | 185..768 | 99 | <- | Minus |
BO15427.pep Sequence
Translation from 16 to 784
> BO15427.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVSISILHLKEECIVCVSRRVPSIFGPSVPWSSI
FARGRRTVRANYSLLQALEAIAVLHLQILATVGLLIHRSCVFRWLSFQSQ
ASFLDH
BO15427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS7-PE | 194 | CG1883-PE | 1..168 | 1..168 | 835 | 100 | Plus |
RpS7-PC | 194 | CG1883-PC | 1..168 | 1..168 | 835 | 100 | Plus |
RpS7-PA | 194 | CG1883-PA | 1..168 | 1..168 | 835 | 100 | Plus |
RpS7-PD | 194 | CG1883-PD | 1..168 | 1..168 | 835 | 100 | Plus |