Clone BO15427 Report

Search the DGRC for BO15427

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptRpS7-RB
Protein status:BO15427.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO15427.3prime Sequence

712 bp (686 high quality bases) assembled on 2006-05-29

> BO15427.3prime
ATGGTCTAGAAAGCTTGCCTGGCTTTGGAAGGACAGCCAGCGAAAAACAC
AAGAACGATGTATTAAAAGACCAACTGTGGCCAATATTTGGAGATGCAGG
ACCGCAATGGCTTCTAATGCCTGCAATAACGAGTAATTGGCCCTGACTGT
TCTGCGTCCCCTGGCGAAGATTGAGCTCCATGGCACGGAAGGCCCAAATA
TCGAGGGTACGCGCCTGCTAACACACACGATGCACTCTTCTTTGAGGTGG
AGGATGCTTATGCTTACTTTGTGTTCAATGGTGGTCTGCTGGTTCTTGTC
CAGGTGCACCTTGACCAGCTGGGAGCCGTCGAGCTTGACGCGGATGCGCT
TGCCCACAATCTCGGCGGGGAAGACCAGATCCTCAAGGATGGCGTCGTAC
ACAGCGGTCAGAGTCCTGGAGCGTGGACGCTTCTGCTTGAGGGGGTTGCG
GGCCTTGCGCGTGGGCTTGGGCAGGATCTTGCGCTCCGCAATCACGACGA
CGTGCTTGCCCGAGAACTTCTTCTCCAGCTCGCGGACCAGGATGATCTGG
ATCTTCTGGAACACCTTCTGCTGTGGAATGGGCACGTAGATGATGACGGC
CTTCTTGCTGCCGAACTCGATCTCGCGGGCACGGGTGATGTGCAGATCGC
GCAGGTAGGGCTTCAGGTCGCTGTTGGCCTCGAGTTCCACCACGCCTGGG
CAATGGACTTCT

BO15427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PB 753 RpS7-RB 77..750 692..19 3320 99.7 Minus
CG1883-PD 585 RpS7-RD 77..503 692..266 2110 99.7 Minus
CG1883-PA 585 RpS7-RA 77..503 692..266 2110 99.7 Minus
CG1883-PC 585 RpS7-RC 77..503 692..266 2110 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 93..540 712..266 2200 99.6 Minus
RpS7-RC 978 CG1883-RC 341..788 712..266 2200 99.6 Minus
RpS7-RA 725 CG1883-RA 88..535 712..266 2200 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30207844..30208427 19..602 2890 99.7 Plus
3R 32079331 3R 30208489..30208602 600..712 520 99.1 Plus
Blast to na_te.dros performed on 2015-02-08 12:50:35 has no hits.

BO15427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:35 Download gff for BO15427.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-PB 56..753 16..712 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:32 Download gff for BO15427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PB 56..753 16..712 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:52 Download gff for BO15427.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 88..535 266..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:42 Download gff for BO15427.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 88..535 266..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:42 Download gff for BO15427.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30208490..30208602 601..712 99   Plus
3R 30207844..30208425 19..600 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:52 Download gff for BO15427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26033566..26034147 19..600 99 <- Plus
arm_3R 26034212..26034324 601..712 99   Plus

BO15427.5prime Sequence

782 bp (781 high quality bases) assembled on 2006-05-29

> BO15427.5prime
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGGCAAGCTTTCTAGACC

BO15427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1883-PB 753 RpS7-RB 1..750 17..766 3700 99.7 Plus
CG1883-PD 585 RpS7-RD 1..503 17..519 2490 99.8 Plus
CG1883-PA 585 RpS7-RA 1..503 17..519 2490 99.8 Plus
CG1883-PC 585 RpS7-RC 1..503 17..519 2490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..540 17..519 2500 99.8 Plus
RpS7-RC 978 CG1883-RC 286..788 17..519 2500 99.8 Plus
RpS7-RA 725 CG1883-RA 33..535 17..519 2500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30207844..30208427 766..183 2890 99.7 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:50:16 has no hits.

BO15427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:36 Download gff for BO15427.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-PB 1..753 17..769 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:33 Download gff for BO15427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1883-PB 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:31 Download gff for BO15427.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..535 10..519 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:25 Download gff for BO15427.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 22..535 10..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:25 Download gff for BO15427.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30207844..30208425 185..766 99 <- Minus
3R 30208490..30208657 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:31 Download gff for BO15427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26033566..26034147 185..766 99 <- Minus
arm_3R 26034212..26034379 17..184 100   Minus

BO15427.complete Sequence

784 bp (784 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633457

> BO15427.complete
GAAGTTATCAGTCGACATGGCTATCGGCTCCAAGATTATCAAGCCCGGCG
GCTCGGATCCCGATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAA
CTCGAGGCCAACAGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCAC
CCGTGCCCGCGAGATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACG
TGCCCATTCCACAGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTC
CGCGAGCTGGAGAAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGA
GCGCAAGATCCTGCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGC
AGAAGCGTCCACGCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTT
GAGGATCTGGTCTTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAA
GCTCGACGGCTCCCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGA
CCACCATTGAACACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAG
TGCATCGTGTGTGTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGT
GCCATGGAGCTCAATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATT
ACTCGTTATTGCAGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATA
TTGGCCACAGTTGGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCT
GTCCTTCCAAAGCCAGGCAAGCTTTCTAGACCAT

BO15427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 585 CG1883-PE 1..503 17..519 2500 99.8 Plus
RpS7-RC 585 CG1883-PC 1..503 17..519 2500 99.8 Plus
RpS7-RA 585 CG1883-PA 1..503 17..519 2500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-RE 813 CG1883-RE 38..540 17..519 2500 99.8 Plus
RpS7-RC 978 CG1883-RC 286..788 17..519 2500 99.8 Plus
RpS7-RA 725 CG1883-RA 33..535 17..519 2500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30207844..30208427 766..183 2890 99.7 Minus
3R 32079331 3R 30208489..30208657 185..17 845 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:12:00 has no hits.

BO15427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:44 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:01 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 16..779 10..769 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:29 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..535 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:44 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 16..779 10..769 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:34 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RA 33..535 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:34 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30208490..30208657 17..184 100   Minus
3R 30207841..30208425 185..768 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:29 Download gff for BO15427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26034212..26034379 17..184 100   Minus
arm_3R 26033563..26034147 185..768 99 <- Minus

BO15427.pep Sequence

Translation from 16 to 784

> BO15427.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVSISILHLKEECIVCVSRRVPSIFGPSVPWSSI
FARGRRTVRANYSLLQALEAIAVLHLQILATVGLLIHRSCVFRWLSFQSQ
ASFLDH

BO15427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-PE 194 CG1883-PE 1..168 1..168 835 100 Plus
RpS7-PC 194 CG1883-PC 1..168 1..168 835 100 Plus
RpS7-PA 194 CG1883-PA 1..168 1..168 835 100 Plus
RpS7-PD 194 CG1883-PD 1..168 1..168 835 100 Plus