Clone Sequence Records
BO15428.3prime Sequence
802 bp (712 high quality bases) assembled on 2006-05-29
> BO15428.3prime
ATGGTCTAGAAAGCTTGCCGGAATCGAGCTGACACGCACCACCTGCGCCA
GTGGCAACGTGTCCAGGCGCTGTAGTCGCTGTCGTTTCTCGCCGGGATTG
AGCTTGGCCGCAGCACTGGCCTGGCCACCTGGACTGGCGACCGTACTGCG
ACCTGATCTCGTACCCGGACCAGATGCGCCAGCTGAATCCGTGCTATCGC
TCTGCGCCTCCACCAGTTTGACATGGGCGATGGTCTGACCGAAGAGCTTC
TGCCGGAAACTGGGCCTCTTGGGCGCTCCACGATGCACGCCAATGTCCGG
CGTATGCGAGCGCTGATGGCTACGTTGATGATGATCATCTCGCTCCACGG
AGCGCTCCTTGTGACGATGGCGTCGCTGCTTCTTGCGGTGCTCACCGCCA
CCGTTGGGCAGCAGCTCGTTGACGTAGTGCAGCGAACTGGAGGCACTGCC
CGTGGAATCGGTGCCGGAGTGACCATGATGCGATTGCGCCTTCTTCGCGT
GGCGCGCATGCTTCTCCTCCAGCTCGATTTTGTTCTTTAGCGTCACCTCC
TCGATGTGCCGCTCAAACATGGCACGCCTGTGCTTGTCCCTCTTGGCCAG
GACGACCACCCAGGCGCCGTAGGAGAGCATGATGCCCGCCGGTACCAGGA
CGCCAGCCAGCGAGTTCTCCGACTTCCGGACGCAGGCATGGTAGACAGCC
AGGAAGAGCACCAGAAAACAGACGATCACAGCCACCAGACGTCCATTGGC
TTTTCGCTCCTCGCGCGACTTGAGGTCGAGGATCTCGTTGAGATTCTCCT
GA
BO15428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-PA | 954 | CG32599-RA | 168..951 | 802..19 | 3870 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 1233 | CG32599-RA | 311..1094 | 802..19 | 3890 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14245830..14246375 | 564..19 | 2730 | 100 | Minus |
X | 23542271 | X | 14245618..14245765 | 711..564 | 710 | 98.6 | Minus |
X | 23542271 | X | 14245248..14245299 | 762..711 | 260 | 100 | Minus |
X | 23542271 | X | 14243996..14244036 | 802..762 | 205 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 18:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 933..1027 | 341..247 | 113 | 62.9 | Minus |
BO15428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:37 Download gff for
BO15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 169..954 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:34 Download gff for
BO15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 169..954 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:48:17 Download gff for
BO15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 312..1094 | 19..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:01:46 Download gff for
BO15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 312..1094 | 19..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:01:46 Download gff for
BO15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14243997..14244035 | 763..801 | 100 | -> | Minus |
X | 14245248..14245299 | 711..762 | 100 | -> | Minus |
X | 14245619..14245764 | 565..710 | 98 | -> | Minus |
X | 14245830..14246375 | 19..564 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:48:17 Download gff for
BO15428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14138030..14138068 | 763..801 | 100 | -> | Minus |
arm_X | 14139281..14139332 | 711..762 | 100 | -> | Minus |
arm_X | 14139652..14139797 | 565..710 | 98 | -> | Minus |
arm_X | 14139863..14140408 | 19..564 | 100 | | Minus |
BO15428.5prime Sequence
821 bp (779 high quality bases) assembled on 2006-05-29
> BO15428.5prime
GAAGTTATCAGTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGC
CAAAATTTCCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAAT
CCGGCGGTGCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAA
GAGCATTACGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACG
AGATCCTCGACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTG
GTGGCTGTGATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGC
CTGCGTCCGGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGG
GCATCATGCTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGAC
AAGCACAGGCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAA
GAACAAAATCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGC
AATCGCATCATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGT
TCGCTGCACTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCG
CAAGAAGCAGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATG
ATCATCATCAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTG
CATCGTGGAGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCA
GACCATCGCCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATT
CAGCTGGCGCATCTGGTCCGG
BO15428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-PA | 954 | CG32599-RA | 1..805 | 17..821 | 3975 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 1233 | CG32599-RA | 143..948 | 16..821 | 4000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14245830..14246229 | 422..821 | 2000 | 100 | Plus |
X | 23542271 | X | 14243828..14244036 | 16..224 | 1045 | 100 | Plus |
X | 23542271 | X | 14245618..14245765 | 275..422 | 710 | 98.6 | Plus |
X | 23542271 | X | 14245248..14245299 | 224..275 | 260 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 933..1027 | 645..739 | 113 | 62.9 | Plus |
BO15428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:38 Download gff for
BO15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:36 Download gff for
BO15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:33:52 Download gff for
BO15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 143..948 | 16..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:48 Download gff for
BO15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 143..948 | 16..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:48 Download gff for
BO15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14243828..14244035 | 16..223 | 100 | -> | Plus |
X | 14245248..14245299 | 224..275 | 100 | -> | Plus |
X | 14245619..14245764 | 276..421 | 98 | -> | Plus |
X | 14245830..14246229 | 422..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:33:52 Download gff for
BO15428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14137861..14138068 | 16..223 | 100 | -> | Plus |
arm_X | 14139281..14139332 | 224..275 | 100 | -> | Plus |
arm_X | 14139652..14139797 | 276..421 | 98 | -> | Plus |
arm_X | 14139863..14140262 | 422..821 | 100 | | Plus |
BO15428.complete Sequence
985 bp (985 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633458
> BO15428.complete
GAAGTTATCAGTCGACATGTCCGCGACCGCCTCAAATCGCCAGCCGGTGC
CAAAATTTCCGGCCGCCATGCCGCGTGGAACGGGCACAGTGTGCTCCAAT
CCGGCGGTGCCCAAGTCGCCGGATGCCCTCACCTCCCTGGTGGCCCGGAA
GAGCATTACGTCCATGTCGGAGGAGGAGATCATTCAGGAGAATCTCAACG
AGATCCTCGACCTCAAGTCGCGCGAGGAGCGAAAAGCCAATGGACGTCTG
GTGGCTGTGATCGTCTGTTTTCTGGTGCTCTTCCTGGCTGTCTACCATGC
CTGCGTCCGGAAGTCGGAGAACTCGCTGGCTGGCGTCCTGGTACCGGCGG
GCATCATGCTCTCCTACGGCGCCTGGGTGGTCGTCCTGGCCAAGAGGGAC
AAGCACAGGCGTGCCATGTTTGAGCGGCACATCGAGGAGGTGACGCTAAA
GAACAAAATCGAGCTGGAGGAGAAGCATGCGCGCCACGCGAAGAAGGCGC
AATCGCATCATGGTCACTCCGGCACCGATTCCACGGGCAGTGCCTCCAGT
TCGCTGCACTACGTCAACGAGCTGCTGCCCAACGGTGGCGGTGAGCACCG
CAAGAAGCAGCGACGCCATCGTCACAAGGAGCGCTCCGTGGAGCGAGATG
ATCATCATCAACGTAGCCATCAGCGCTCGCATACGCCGGACATTGGCGTG
CATCGTGGAGCGCCCAAGAGGCCCAGTTTCCGGCAGAAGCTCTTCGGTCA
GACCATCGCCCATGTCAAACTGGTGGAGGCGCAGAGCGATAGCACGGATT
CAGCTGGCGCATCTGGTCCGGGTACGAGATCAGGTCGCAGTACGGTCGCC
AGTCCAGGTGGCCAGGCCAGTGCTGCGGCCAAGCTCAATCCCGGCGAGAA
ACGACAGCGACTACAGCGCCTGGACACGTTGCCACTGGCGCAGGTGGTGC
GTGTCAGCTCGATTCCGGCAAGCTTTCTAGACCAT
BO15428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 954 | CG32599-PA | 1..951 | 17..967 | 4725 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-RA | 1233 | CG32599-RA | 143..1094 | 16..967 | 4730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14245830..14246375 | 422..967 | 2730 | 100 | Plus |
X | 23542271 | X | 14243828..14244036 | 16..224 | 1045 | 100 | Plus |
X | 23542271 | X | 14245618..14245765 | 275..422 | 710 | 98.6 | Plus |
X | 23542271 | X | 14245248..14245299 | 224..275 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 933..1027 | 645..739 | 113 | 62.9 | Plus |
BO15428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:37 Download gff for
BO15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:48 Download gff for
BO15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:41 Download gff for
BO15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 144..1094 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:03 Download gff for
BO15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32599-RA | 144..1094 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:03 Download gff for
BO15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14243829..14244035 | 17..223 | 100 | -> | Plus |
X | 14245248..14245299 | 224..275 | 100 | -> | Plus |
X | 14245619..14245764 | 276..421 | 98 | -> | Plus |
X | 14245830..14246375 | 422..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:41 Download gff for
BO15428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14137862..14138068 | 17..223 | 100 | -> | Plus |
arm_X | 14139281..14139332 | 224..275 | 100 | -> | Plus |
arm_X | 14139652..14139797 | 276..421 | 98 | -> | Plus |
arm_X | 14139863..14140408 | 422..969 | 99 | | Plus |
BO15428.pep Sequence
Translation from 16 to 985
> BO15428.pep
MSATASNRQPVPKFPAAMPRGTGTVCSNPAVPKSPDALTSLVARKSITSM
SEEEIIQENLNEILDLKSREERKANGRLVAVIVCFLVLFLAVYHACVRKS
ENSLAGVLVPAGIMLSYGAWVVVLAKRDKHRRAMFERHIEEVTLKNKIEL
EEKHARHAKKAQSHHGHSGTDSTGSASSSLHYVNELLPNGGGEHRKKQRR
HRHKERSVERDDHHQRSHQRSHTPDIGVHRGAPKRPSFRQKLFGQTIAHV
KLVEAQSDSTDSAGASGPGTRSGRSTVASPGGQASAAAKLNPGEKRQRLQ
RLDTLPLAQVVRVSSIPASFLDH
BO15428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32599-PA | 317 | CG32599-PA | 1..317 | 1..317 | 1620 | 100 | Plus |