Clone Sequence Records
BO15432.3prime Sequence
781 bp (746 high quality bases) assembled on 2006-05-29
> BO15432.3prime
ATGGTCTAGAAAGCTTGCCCAGCGTGGGCGTATCTCCTTGAACCACCACT
GCTGGTAGCTATCGTTAACATCGCAGTGACCCAATGACAATTGCTGCGTG
GCCGGATGCAGGGCCATGCATTTCTTGTGGACGCGATGCATCAGGTGCTT
CGTGTGCTCGTTGTACTGCCAAGGACCGTCGACTGTCCCCAGACGACACA
CGGCCAGTTTGATGCCCTGCCGATCGGCCTCCACGCAGCGCTCGCCGACG
CCCAACTGGCCAGCGGCATTGAGCCGAACCAGTTGATTATTTCCGCCTCC
ATGGCAGTATGTGAGGCCCATGATGGCCGGCGGCTGGTGGCCCATCGAGT
CCAGGCATCCGTCGGAGGCCACCGAGCGCAGCTCGCCCCAGTGCAGGTTG
GCCGGCAGACCCGGGAACTTGTCGTACACATCGTAAGCGATGTGGTCCAT
GAACCACTGGAAGCTCTTGCAGTTCAGTCGCTTCTTCAGCGCCAGTTGCT
CGCTAATGTCGCCCATGTCCAGGTAGCGGGCAAGCGGCTCGCGCGTATAG
AAGTACTCCTTGTGCGTGTCGTCGAACCACGTCTCGATGACGCGCTTGTA
GTTGATCGTGATCAATGGACCCTTCTTCTTGCTAGCCAGTTTGCCGAAAT
TGTAGGGCATAAAGCCGCGATAGACGTGACCCACGCGAGAGCATGGCACC
CACTCGATGCTGCCGCCACACTGCCAGATCTTGAAGCTCAATTCGAAAGT
TCTCGCCGCCCCAGACCAGCAGACCCGGAAT
BO15432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6394-PA | 1776 | GalNAc-T2-RA | 1045..1773 | 747..19 | 3620 | 99.8 | Minus |
| CG6394-PB | 1776 | GalNAc-T2-RB | 1045..1773 | 747..19 | 3620 | 99.8 | Minus |
| CG6394-PA | 1776 | GalNAc-T2-RA | 1014..1046 | 779..747 | 165 | 100 | Minus |
| CG6394-PB | 1776 | GalNAc-T2-RB | 1014..1046 | 779..747 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 1564..2323 | 779..19 | 3765 | 99.7 | Minus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 1450..2209 | 779..19 | 3765 | 99.7 | Minus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 1450..2209 | 779..19 | 3765 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18496412..18497171 | 19..779 | 3740 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:23:34 has no hits.
BO15432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:45 Download gff for
BO15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PA | 1013..1776 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:46 Download gff for
BO15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PB | 1013..1776 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:49 Download gff for
BO15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 1449..2213 | 14..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:08 Download gff for
BO15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 1449..2213 | 14..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:08 Download gff for
BO15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18496408..18497172 | 14..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:49 Download gff for
BO15432.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18390441..18391205 | 14..781 | 99 | | Plus |
BO15432.5prime Sequence
774 bp (773 high quality bases) assembled on 2006-05-29
> BO15432.5prime
GAAGTTATCAGTCGACATGCGCGTGAGCACCATCCGCAGCGGTCGGATCT
GCCGGCTGGCATTGTGCCTGCTGGTACTGCTGCCGCTGCTGTATCTGCTG
GCCAACTGGAGCGATCACCACAAGCGCGTCCAGGAGGCGTATCACACGCG
CTTCGGCGGACCCAAGTTCGCCCACCAGCGATTGGAGGGCAGGCCCAGGG
AGGTGCCCAAGCTGGTCGATGGCCTTGGCAACTTTGAGCCGAAAGATGTG
AAGCCACGTAGCGGGCCTGGCGAGAATGGCGAGGCCCACAGCCTGTCGCC
GGACAAGAAGCACATGTCGGACGCCTCCGAGATGGAGTACGGCATGAACA
TCGCCTGCTCCGATGAGATATCGATGCACCGATCGGTGCGGGACACGCGG
CTCGAAGAGTGCCGCCACTGGGACTACCCCTTCGATCTGCCGCGCACGAG
CGTCATCATTGTCTTCCACAACGAGGGCTTCTCGGTGCTGATGCGCACCG
TGCACTCGGTCATCGATCGTTCGCCCACGCACATGCTGCACGAGATCATC
CTGGTGGATGACTTCTCCGACAAGGAGAACCTGCGCAGCCAGCTGGACGA
GTATGTGCTGCAGTTCAAGGGGCTGGTCAAGGTCATCAGGAACAAGGAGC
GCGAAGGTCTCATCCGAACGAGATCCAGGGGAGCCATGGAGGCTACAGGT
GAGGTGATCGTCTTCTTGGACGCCCATTGCGAGGTAAACACCAACTGGCT
GCCGCCCTTGCTGGCGCCCATCTA
BO15432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6394-PA | 1776 | GalNAc-T2-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
| CG6394-PB | 1776 | GalNAc-T2-RB | 1..758 | 17..774 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 551..1308 | 17..774 | 3790 | 100 | Plus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 437..1194 | 17..774 | 3790 | 100 | Plus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 437..1194 | 17..774 | 3790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18497942..18498422 | 701..221 | 2405 | 100 | Minus |
| X | 23542271 | X | 18499231..18499436 | 222..17 | 1030 | 100 | Minus |
| X | 23542271 | X | 18497427..18497505 | 774..696 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:35:43 has no hits.
BO15432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:47 Download gff for
BO15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PA | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:48 Download gff for
BO15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6394-PB | 1..757 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:33 Download gff for
BO15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1193 | 14..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:32 Download gff for
BO15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1193 | 14..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:32 Download gff for
BO15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18497428..18497502 | 699..773 | 100 | <- | Minus |
| X | 18497945..18498421 | 222..698 | 100 | <- | Minus |
| X | 18499232..18499439 | 14..221 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:33 Download gff for
BO15432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18391461..18391535 | 699..773 | 100 | <- | Minus |
| arm_X | 18391978..18392454 | 222..698 | 100 | <- | Minus |
| arm_X | 18393265..18393472 | 14..221 | 99 | | Minus |
BO15432.complete Sequence
1807 bp assembled on 2006-10-11
GenBank Submission: FJ633460
> BO15432.complete
GAAGTTATCAGTCGACATGCGCGTGAGCACCATCCGCAGCGGTCGGATCT
GCCGGCTGGCATTGTGCCTGCTGGTACTGCTGCCGCTGCTGTATCTGCTG
GCCAACTGGAGCGATCACCACAAGCGCGTCCAGGAGGCGTATCACACGCG
CTTCGGCGGACCCAAGTTCGCCCACCAGCGATTGGAGGGCAGGCCCAGGG
AGGTGCCCAAGCTGGTCGATGGCCTTGGCAACTTTGAGCCGAAAGATGTG
AAGCCACGTAGCGGGCCTGGCGAGAATGGCGAGGCCCACAGCCTGTCGCC
GGACAAGAAGCACATGTCGGACGCCTCCGAGATGGAGTACGGCATGAACA
TCGCCTGCTCCGATGAGATATCGATGCACCGATCGGTGCGGGACACGCGG
CTCGAAGAGTGCCGCCACTGGGACTACCCCTTCGATCTGCCGCGCACGAG
CGTCATCATTGTCTTCCACAACGAGGGCTTCTCGGTGCTGATGCGCACCG
TGCACTCGGTCATCGATCGTTCGCCCACGCACATGCTGCACGAGATCATC
CTGGTGGATGACTTCTCCGACAAGGAGAACCTGCGCAGCCAGCTGGACGA
GTATGTGCTGCAGTTCAAGGGGCTGGTCAAGGTCATCAGGAACAAGGAGC
GCGAAGGTCTCATCCGAACGAGATCCAGGGGAGCCATGGAGGCTACAGGT
GAGGTGATCGTCTTCTTGGACGCCCATTGCGAGGTAAACACCAACTGGCT
GCCGCCCTTGCTGGCGCCCATCTACCGGGATCGCACTGTGATGACAGTGC
CCATTATCGATGGCATTGACCACAAGAACTTTGAGTACCGGCCGGTTTAT
GGCACGGACAACCACTTCCGCGGCATCTTCGAATGGGGCATGCTGTACAA
GGAGAACGAGGTGCCACGTCGCGAGCAGCGCCGCCGTGCTCACAACTCGG
AACCCTATCGCAGTCCCACGCACGCCGGCGGCCTGTTCGCCATCAATAGG
GAGTACTTCCTGGAGCTGGGCGCCTACGATCCGGGTCTGCTGGTCTGGGG
CGGCGAGAACTTCGAATTGAGCTTCAAGATCTGGCAGTGTGGCGGCAGCA
TCGAGTGGGTGCCATGCTCTCGCGTGGGTCACGTCTATCGCGGCTTTATG
CCCTACAATTTCGGCAAACTGGCTAGCAAGAAGAAGGGTCCATTGATCAC
GATCAACTACAAGCGCGTCATCGAGACGTGGTTCGACGACACGCACAAGG
AGTACTTCTATACGCGCGAGCCGCTTGCCCGCTACCTGGACATGGGCGAC
ATTAGCGAGCAACTGGCGCTGAAGAAGCGACTGAACTGCAAGAGCTTCCA
GTGGTTCATGGACCACATCGCCTACGATGTGTACGACAAGTTCCCGGGTC
TGCCGGCCAACCTGCACTGGGGCGAGCTGCGCTCGGTGGCCTCCGACGGA
TGCCTGGACTCGATGGGCCACCAGCCGCCGGCCATCATGGGCCTCACATA
CTGCCATGGAGGCGGAAATAATCAACTGGTTCGGCTCAATGCCGCTGGCC
AGTTGGGCGTCGGCGAGCGCTGCGTGGAGGCCGATCGGCAGGGCATCAAA
CTGGCCGTGTGTCGTCTGGGGACAGTCGACGGTCCTTGGCAGTACAACGA
GCACACGAAGCACCTGATGCATCGCGTCCACAAGAAATGCATGGCCCTGC
ATCCGGCCACGCAGCAATTGTCATTGGGTCACTGCGATGTTAACGATAGC
TACCAGCAGTGGTGGTTCAAGGAGATACGCCCACGCTGGGCAAGCTTTCT
AGACCAT
BO15432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 1776 | CG6394-PC | 1..1773 | 17..1789 | 8865 | 100 | Plus |
| GalNAc-T2-RB | 1776 | CG6394-PB | 1..1773 | 17..1789 | 8865 | 100 | Plus |
| GalNAc-T2-RA | 1776 | CG6394-PA | 1..1773 | 17..1789 | 8865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 551..2323 | 17..1789 | 8865 | 100 | Plus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 437..2209 | 17..1789 | 8865 | 100 | Plus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 437..2209 | 17..1789 | 8865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18496412..18497505 | 1789..696 | 5470 | 100 | Minus |
| X | 23542271 | X | 18497942..18498422 | 701..221 | 2405 | 100 | Minus |
| X | 23542271 | X | 18499231..18499436 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:42 has no hits.
BO15432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:14 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RB | 1..1776 | 17..1793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:36 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RB | 431..2210 | 14..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:41 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 437..2209 | 17..1791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:14 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RB | 431..2210 | 14..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:14 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 437..2209 | 17..1791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:14 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18496410..18497502 | 699..1791 | 99 | <- | Minus |
| X | 18497945..18498421 | 222..698 | 100 | <- | Minus |
| X | 18499232..18499436 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:41 Download gff for
BO15432.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18390443..18391535 | 699..1791 | 99 | <- | Minus |
| arm_X | 18391978..18392454 | 222..698 | 100 | <- | Minus |
| arm_X | 18393265..18393469 | 17..221 | 100 | | Minus |
BO15432.pep Sequence
Translation from 16 to 1807
> BO15432.pep
MRVSTIRSGRICRLALCLLVLLPLLYLLANWSDHHKRVQEAYHTRFGGPK
FAHQRLEGRPREVPKLVDGLGNFEPKDVKPRSGPGENGEAHSLSPDKKHM
SDASEMEYGMNIACSDEISMHRSVRDTRLEECRHWDYPFDLPRTSVIIVF
HNEGFSVLMRTVHSVIDRSPTHMLHEIILVDDFSDKENLRSQLDEYVLQF
KGLVKVIRNKEREGLIRTRSRGAMEATGEVIVFLDAHCEVNTNWLPPLLA
PIYRDRTVMTVPIIDGIDHKNFEYRPVYGTDNHFRGIFEWGMLYKENEVP
RREQRRRAHNSEPYRSPTHAGGLFAINREYFLELGAYDPGLLVWGGENFE
LSFKIWQCGGSIEWVPCSRVGHVYRGFMPYNFGKLASKKKGPLITINYKR
VIETWFDDTHKEYFYTREPLARYLDMGDISEQLALKKRLNCKSFQWFMDH
IAYDVYDKFPGLPANLHWGELRSVASDGCLDSMGHQPPAIMGLTYCHGGG
NNQLVRLNAAGQLGVGERCVEADRQGIKLAVCRLGTVDGPWQYNEHTKHL
MHRVHKKCMALHPATQQLSLGHCDVNDSYQQWWFKEIRPRWASFLDH
BO15432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-PC | 591 | CG6394-PC | 1..591 | 1..591 | 3238 | 100 | Plus |
| GalNAc-T2-PB | 591 | CG6394-PB | 1..591 | 1..591 | 3238 | 100 | Plus |
| GalNAc-T2-PA | 591 | CG6394-PA | 1..591 | 1..591 | 3238 | 100 | Plus |
| pgant6-PC | 666 | CG2103-PC | 133..647 | 73..584 | 969 | 41.2 | Plus |
| pgant6-PB | 666 | CG2103-PB | 133..647 | 73..584 | 969 | 41.2 | Plus |
