Clone BO15435 Report

Search the DGRC for BO15435

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG13900-RA
Protein status:BO15435.pep: validated full length
Sequenced Size:3715

Clone Sequence Records

BO15435.3prime Sequence

817 bp (767 high quality bases) assembled on 2006-05-29

> BO15435.3prime
ATGGTCTAGAAAGCTTGCGAAGGCGTATCGCGTGCGAATATCCTCCAGTT
TCTTGCAGATCTGATTGGGAGTGCGGAACATGTCGCCAGCTATGCTCTTC
TGCTTGGCTGCCTCAATGGACAGATACTGCTCGCAGAGATCGCCGTCGAG
TACGTTTTTGACCGGATAATACGAGCTCCTGTAGCTGAGATGGTCGCGTC
CACAGAGTGGAGGATTCTCATTGCGCATGTGCATCTCCAGATGTTGGAAG
AAGTCGTAGTCCTCGCGACTGGTGAACGGAACAAATGCTCCAACAGTGCC
ACTTAGCGTGGCGTATATAAGGGCTTCCGATCCTCCAGGAATTAGCGTTG
CCTTCTGCAGCGACATGATTATCTCGCCCACATGGAAGGAGCAAATGTTC
TCCGACTTCTGTGAAGCACCTGACAGCAGGCCACGATCCCACAGAGACTT
GGTGCCCGTTGGATCCTCGTCCACATCGTCCGTTACGGAGTGGGGCAATC
GCTGAATGCTCAGGTTGCCAAACTTATCGGCTATGGCTATGGTATCATAG
TCCAGCAAGGTGGTGGCCGTCACCCATCGAGGATGCGTGTCATCGGCAAA
TATAATCAGCTGGTTCTCCGCGCGACGATAGCGTATGAAAAATACTGATT
CCTGAACATCCGACACGTAAACACGATGACCCATGGCTTGGATATTGACA
ATCTGATAGGGAATGTGCTTGTTCTCGCATTTGCGCAGCATTTTCTTCTT
GCCGAAATCGTAGATTCGCAACATTCGACCGCAGCCAGCTAGTAGACGAC
CCTGGAAGCCACACAGG

BO15435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-PA 3684 CG13900-RA 2883..3681 817..19 3995 100 Minus
CG13900-PB 2067 CG13900-RB 1266..2064 817..19 3995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-RC 4329 CG13900-RC 3151..3949 817..19 3995 100 Minus
CG13900-RA 4222 CG13900-RA 3044..3842 817..19 3995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 827881..828679 19..817 3995 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:13:42 has no hits.

BO15435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:50 Download gff for BO15435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-PA 2883..3684 15..817 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:52 Download gff for BO15435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-PB 1266..2067 15..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:44 Download gff for BO15435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 3061..3863 14..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:42:57 Download gff for BO15435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 3044..3846 14..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:42:57 Download gff for BO15435.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 827877..828679 14..817 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:44 Download gff for BO15435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 827877..828679 14..817 99   Plus

BO15435.5prime Sequence

792 bp (769 high quality bases) assembled on 2006-05-29

> BO15435.5prime
GAAGTTATCAGTCGACATGTATCTGTACAACCTGACCCTGCAGAAGGCCA
CCGGCGTGACCCACGCGGTCCACGGCAACTTCTCCGGCGGCAAGCAGCAG
GAGGTCCTCCTGTCGCGTGGCAAGTCGCTGGAGCTACTGCGTCCGGACTC
CAACACCGGCAAGGTGCACACCCTGCTCTCCACGGAGATATTCGGATGCG
TTCGCGCCCTGATGGCCTTTCGACTGACGGGCGGCACTAAAGATTACATA
GTTGTGGGCTCGGACTCGGGACGCATCGTGATCCTCGAGTACAATCCCTC
CAAGAATGCTCTTGAAAAAGTGCACCAGGAGACGTTCGGAAAGTCGGGAT
GTCGCAGGATTGTGCCTGGGCAATACTTTGCCATCGATCCTAAAGGAAGA
GCCGTGATGATTGGCGCCGTGGAGAAGCAAAAGCTGGCCTACATCATGAA
CCGGGACACGCAGGCTCGCCTCACGATCTCATCGCCCCTGGAGGCCCACA
AATCGAATACACTGACATACCACATGGTCGGCGTGGATGTGGGCTTCGAT
AATCCCATGTTCGCCTGCCTAGAGATCGACTACGAAGAGGCCGACATGGA
TCCATCGGGTGACGCCGCCCAGCGCACTCAGCAAACGCTGACTTTCTACG
AGTTGGATCTCGGCTTAAACCACGTGGTTCGCAAATACTCGGAGCCCTTG
GAAGAGCACGCCAATTTCTTGGTATCCGTGCCTGGGGGCAACGATGGTCC
TTCGGGCGTGCTGATCTGCTCGGAGAACTACCTAACGTACAA

BO15435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-PA 3684 CG13900-RA 1..776 17..792 3880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-RC 4329 CG13900-RC 161..937 16..792 3885 100 Plus
CG13900-RA 4222 CG13900-RA 161..937 16..792 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 832040..832409 610..241 1850 100 Minus
3L 28110227 3L 832715..832941 242..16 1135 100 Minus
3L 28110227 3L 831607..831791 792..608 925 100 Minus
Blast to na_te.dros performed on 2015-02-09 11:02:03 has no hits.

BO15435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:51 Download gff for BO15435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:50:54 Download gff for BO15435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:24 Download gff for BO15435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 173..952 12..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:41 Download gff for BO15435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 156..935 12..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:41 Download gff for BO15435.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 831609..831790 609..790 100 <- Minus
3L 832042..832407 243..608 100 <- Minus
3L 832715..832946 12..242 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:24 Download gff for BO15435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 831609..831790 609..790 100 <- Minus
arm_3L 832042..832407 243..608 100 <- Minus
arm_3L 832715..832946 12..242 99   Minus

BO15435.complete Sequence

3715 bp assembled on 2006-10-11

GenBank Submission: FJ633462

> BO15435.complete
GAAGTTATCAGTCGACATGTATCTGTACAACCTGACCCTGCAGAAGGCCA
CCGGCGTGACCCACGCGGTCCACGGCAACTTCTCCGGCGGCAAGCAGCAG
GAGGTCCTCCTGTCGCGTGGCAAGTCGCTGGAGCTACTGCGTCCGGACTC
CAACACCGGCAAGGTGCACACCCTGCTCTCCACGGAGATATTCGGATGCG
TTCGCGCCCTGATGGCCTTTCGACTGACGGGCGGCACTAAAGATTACATA
GTTGTGGGCTCGGACTCGGGACGCATCGTGATCCTCGAGTACAATCCCTC
CAAGAATGCTCTTGAAAAAGTGCACCAGGAGACGTTCGGAAAGTCGGGAT
GTCGCAGGATTGTGCCTGGGCAATACTTTGCCATCGATCCTAAAGGAAGA
GCCGTGATGATTGGCGCCGTGGAGAAGCAAAAGCTGGCCTACATCATGAA
CCGGGACACGCAGGCTCGCCTCACGATCTCATCGCCCCTGGAGGCCCACA
AATCGAATACACTGACATACCACATGGTCGGCGTGGATGTGGGCTTCGAT
AATCCCATGTTCGCCTGCCTAGAGATCGACTACGAAGAGGCCGACATGGA
TCCATCGGGTGACGCCGCCCAGCGCACTCAGCAAACGCTGACTTTCTACG
AGTTGGATCTCGGCTTAAACCACGTGGTTCGCAAATACTCGGAGCCCTTG
GAAGAGCACGCCAATTTCTTGGTATCCGTGCCTGGGGGCAACGATGGTCC
TTCGGGCGTGCTGATCTGCTCGGAGAACTACCTAACGTACAAGAATCTCG
GCGATCAGCACGATATCCGCTGTCCCATTCCGCGCAGGAGAAACGATCTG
GATGATCCCGAACGTGGTATGATCTTCATCTGCTCGGCCACACATCGCAC
CAAGAGCATGTACTTCTTCCTGCTGCAGACCGAGCAGGGAGACATCTTTA
AGATCACCCTGGAAACGGACGATGATGTGGTCTCCGAGATCAAGCTAAAG
TACTTCGATACAGTGCCGCCGGCAACTGCCATGTGCGTGCTAAAGACGGG
TTTCCTGTTCGTGGCCAGCGAGTTTGGCAACCACTATCTATATCAAATCG
CTCATCTGGGTGACGACGATGACGAGCCGGAGTTCAGTTCGGCCATGCCT
TTGGAGGAGGGTGAAACCTTCTTCTTTGCGCCACGTGCCCTAAAGAACCT
GGTGCTTGTGGATGAACTGCCCTCTTTCGCACCGATCATCACCTCCCAGG
TGGCTGATCTGGCCAACGAGGACACACCGCAACTGTACGTTCTTTGCGGA
CGAGGACCGCGTTCCACTCTGCGGGTGCTGCGCCACGGCCTCGAGGTGTC
CGAGATGGCCGTTTCCGAACTGCCTGGTAATCCCAATGCGGTTTGGACTG
TGAAGAAACGAGCTGATGACGAGTTTGATGCCTATATCATCGTGTCCTTC
GTGAATGCCACCCTGGTTTTGAGCATTGGCGAAACCGTCGAGGAAGTCAC
GGACAGCGGTTTCCTGGGCACCACGCCCACGCTCTGTTGTGCCGCCCTGG
GCGATGATGCGCTGGTTCAGGTTTACCCCGATGGCATTCGACATATCCGA
TCCGACAAGCGTGTGAACGAGTGGAAGGCTCCGGGCAAGAAGTCCATTAC
CAAGTGCGCCGTGAATCAGCGCCAGGTGGTCATCACCTTGTCGGGCAGGG
AGTTGGTCTACTTCGAAATGGATCCGACTGGGGAGCTGAACGAGTACACG
GAACGTTCCGAGATGCCTGCTGAGATTATGTGCATGGCCTTGGGAACTGT
TCCGGAGGGCGAGCAGAGATCCTGGTTCTTGGCCGTCGGCCTGGCGGATA
ATACAGTGCGCATCTTATCGCTGGATCCCAACAACTGTCTCACTCCCTGC
TCCATGCAGGCCCTGCCTTCGCCAGCCGAATCCCTTTGCCTGGTCGAAAT
GGGTCACACGGAGAGCACGACTCAGGGAGGTTTGGATGACGATGCTCCCG
CTCAGCGCAGTGGCAACAATAAGGGAACCATTTACCTAAACATTGGCTTG
AGCAACGGTGTCCTGCTGAGAACTGTGCTCGATCCTGTTTCCGGAGATTT
GGCAGACACCCGAACGAGATATTTGGGTTCCCGACCCGTAAAGCTCTTCC
GGATCAAGATGCAGGGATCCGAAGCGGTGCTGGCCATGTCCAGTCGAACC
TGGCTGTCGTACTACCACCAAAATCGATTCCATTTGACGCCTCTGTCTTA
TGAAACCCTTGAGTATGCTTCTGGCTTCTCGAGCGAGCAGTGCAGCGAAG
GTATCGTGGCTATATCCACCAACACCTTGAGGATCTTGGCCCTGGAGAAA
CTGGGAGCCGTCTTCAATCAAGTAGCGTTCCCCTTGCAGTACACTCCACG
TACCTTTGTAATCCATCCGGATACGGGACGCATGCTAATTGCCGAAACCG
ATCACAACGCCTACACAGAGGATACGAAGAGTGCCCGAAAGGAGCAAATG
GCGGAGGAGATGCGCAGTGCAGCTGGCGATGAGGAAAGGGAGTTGGCCCG
CGAAATGGCCAATGCTTTCATCAACGAAGTCCTTCCCGAGGACGTGTTTT
CGTCGCCCAAAGCAGGACTGGGTCTTTGGGCCTCGCAAATCCGTTGCCTG
GACGCAATGCATGGTCAGACGATGTTTAGTGTGCCGCTCACCCAAAACGA
GGCCATTATGTCGATGGCCATGCTGAAGTTCTCCATAGCGGCTGATGGCC
GGTACTACCTGGCCGTGGGAATCGCCAAGGATCTGCAGCTGAATCCCAGG
ATTTCGCAAGGCGGCTGCATAGATATCTACAAAATAGATCCCACTTGCTC
CAGTCTGGAATTCATGCACCGCACGGACATTGACGAGATTCCTGGAGCCC
TGTGTGGCTTCCAGGGTCGTCTACTAGCTGGCTGCGGTCGAATGTTGCGA
ATCTACGATTTCGGCAAGAAGAAAATGCTGCGCAAATGCGAGAACAAGCA
CATTCCCTATCAGATTGTCAATATCCAAGCCATGGGTCATCGTGTTTACG
TGTCGGATGTTCAGGAATCAGTATTTTTCATACGCTATCGTCGCGCGGAG
AACCAGCTGATTATATTTGCCGATGACACGCATCCTCGATGGGTGACGGC
CACCACCTTGCTGGACTATGATACCATAGCCATAGCCGATAAGTTTGGCA
ACCTGAGCATTCAGCGATTGCCCCACTCCGTAACGGACGATGTGGACGAG
GATCCAACGGGCACCAAGTCTCTGTGGGATCGTGGCCTGCTGTCAGGTGC
TTCACAGAAGTCGGAGAACATTTGCTCCTTCCATGTGGGCGAGATAATCA
TGTCGCTGCAGAAGGCAACGCTAATTCCTGGAGGATCGGAAGCCCTTATA
TACGCCACGCTAAGTGGCACTGTTGGAGCATTTGTTCCGTTCACCAGTCG
CGAGGACTACGACTTCTTCCAACATCTGGAGATGCACATGCGCAATGAGA
ATCCTCCACTCTGTGGACGCGACCATCTCAGCTACAGGAGCTCGTATTAT
CCGGTCAAAAACGTACTCGACGGCGATCTCTGCGAGCAGTATCTGTCCAT
TGAGGCAGCCAAGCAGAAGAGCATAGCTGGCGACATGTTCCGCACTCCCA
ATCAGATCTGCAAGAAACTGGAGGATATTCGCACGCGATACGCCTTCGCA
AGCTTTCTAGACCAT

BO15435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-RA 3684 CG13900-PA 1..3681 17..3697 18405 100 Plus
CG13900-RC 1410 CG13900-PC 1..1402 17..1418 7010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-RA 4222 CG13900-RA 161..3842 16..3697 18410 100 Plus
CG13900-RC 4329 CG13900-RC 1670..3949 1418..3697 11400 100 Plus
CG13900-RC 4329 CG13900-RC 161..1563 16..1418 7015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 827881..829852 3697..1726 9860 100 Minus
3L 28110227 3L 831316..831791 1083..608 2380 100 Minus
3L 28110227 3L 832040..832409 610..241 1850 100 Minus
3L 28110227 3L 830908..831242 1418..1084 1675 100 Minus
3L 28110227 3L 830034..830342 1726..1418 1545 100 Minus
3L 28110227 3L 832715..832941 242..16 1135 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:40:38 has no hits.

BO15435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:17 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 1..3684 17..3701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:38 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 173..3863 12..3702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:50 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 179..3859 17..3699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:18 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 173..3863 12..3702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:09 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 162..3842 17..3699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:09 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
3L 827879..829851 1727..3699 99 <- Minus
3L 830034..830341 1419..1726 100 <- Minus
3L 830908..831242 1084..1418 100 <- Minus
3L 831316..831790 609..1083 100 <- Minus
3L 832042..832407 243..608 100 <- Minus
3L 832715..832940 17..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:50 Download gff for BO15435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 831316..831790 609..1083 100 <- Minus
arm_3L 827879..829851 1727..3699 99 <- Minus
arm_3L 830034..830341 1419..1726 100 <- Minus
arm_3L 830908..831242 1084..1418 100 <- Minus
arm_3L 832042..832407 243..608 100 <- Minus
arm_3L 832715..832940 17..242 100   Minus

BO15435.pep Sequence

Translation from 16 to 3715

> BO15435.pep
MYLYNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLELLRPDSNTGKV
HTLLSTEIFGCVRALMAFRLTGGTKDYIVVGSDSGRIVILEYNPSKNALE
KVHQETFGKSGCRRIVPGQYFAIDPKGRAVMIGAVEKQKLAYIMNRDTQA
RLTISSPLEAHKSNTLTYHMVGVDVGFDNPMFACLEIDYEEADMDPSGDA
AQRTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLVSVPGGNDGPSGVLI
CSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFICSATHRTKSMYF
FLLQTEQGDIFKITLETDDDVVSEIKLKYFDTVPPATAMCVLKTGFLFVA
SEFGNHYLYQIAHLGDDDDEPEFSSAMPLEEGETFFFAPRALKNLVLVDE
LPSFAPIITSQVADLANEDTPQLYVLCGRGPRSTLRVLRHGLEVSEMAVS
ELPGNPNAVWTVKKRADDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFL
GTTPTLCCAALGDDALVQVYPDGIRHIRSDKRVNEWKAPGKKSITKCAVN
QRQVVITLSGRELVYFEMDPTGELNEYTERSEMPAEIMCMALGTVPEGEQ
RSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAESLCLVEMGHTES
TTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDLADTRT
RYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFHLTPLSYETLEY
ASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRTFVIH
PDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDEERELAREMANA
FINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSVPLTQNEAIMSM
AMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYKIDPTCSSLEFM
HRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLRKCENKHIPYQI
VNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTHPRWVTATTLLD
YDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDRGLLSGASQKSE
NICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAFVPFTSREDYDF
FQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLCEQYLSIEAAKQ
KSIAGDMFRTPNQICKKLEDIRTRYAFASFLDH

BO15435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-PA 1227 CG13900-PA 1..1227 1..1227 6395 100 Plus
CG13900-PC 469 CG13900-PC 1..467 1..467 2439 100 Plus
pic-PA 1140 CG7769-PA 5..1118 4..1212 528 20.9 Plus