Clone Sequence Records
BO15439.3prime Sequence
800 bp (759 high quality bases) assembled on 2006-05-29
> BO15439.3prime
ATGGTCTAGAAAGCTTGCGACGCGCTGAATCTCGAAGAGCTTGACCTCCG
TATCGTACCAGATGGCAGGCTCCACGTTGCGCAGGTAGATGACACCCCAG
ATGTAGGTGCGGAACCATGCCGTTGTGCCCGCATTGGCCTGGTACTTTCG
GATGAGAATGGGATGCGGCACTGGGAGCAGTCCCACTAACGTTCCGTGTT
GCAGAAACTTGAGGATCTCCGACTCGTCGGTCAGTCCTTTGTCAATGCAG
ATCTTCTCCACCTGGGGCACTAGGACCTGAAGCAGTCGCATGATGGTCTG
CAGCGGCAGCTTGGAGCGCCAGGAGACGATCCACTCGGGCGTGGGCGTCC
AACGATCGCTCTCGCCAGGCACCATGCGAATGCTGGCCCTGTGGGCCACC
GACAAGCGGGACAATTCCGTGGGTGAGGTGGACTTGCGTTCGTCAGTTGG
CGTCGAAGCGGCTGATCTGTCGTAGGGCACAATGTCTGTAGAATCCTCCA
CCTGAGGCTTGTCATTTGGATGCGCCTGCTCCCGCTCCGTCATCTGAGTA
ATGCCCGGGGTGTCCAACAAGGACGTTTTCAGTGTTCCTGGCTCGGCTGG
CTGCGCCGTGAGAACGTCCGACTGCAGCTCCCCCGCCTGAGATCGCTCAT
GAGACTCTGTCTCCGATTCGAGATCCTCTTCCGCCTTGGGCTCTTCATTA
ATTATCTCCTCCCTCGTCCTCATCCTCGTCTTCTTCGTTGTACTCTTCTG
GCACGTGGGCCGAGGGCAGTTCCTGTGACACAGCTGGCGTTCTTCGCTGT
BO15439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-PC | 2514 | CG8841-RC | 1818..2511 | 712..19 | 3470 | 100 | Minus |
| CG8841-PA | 2514 | CG8841-RA | 1818..2511 | 712..19 | 3470 | 100 | Minus |
| CG8841-PB | 2514 | CG8841-RB | 1818..2511 | 712..19 | 3470 | 100 | Minus |
| CG8841-PC | 2514 | CG8841-RC | 1731..1819 | 800..712 | 420 | 98.8 | Minus |
| CG8841-PA | 2514 | CG8841-RA | 1731..1819 | 800..712 | 420 | 98.8 | Minus |
| CG8841-PB | 2514 | CG8841-RB | 1731..1819 | 800..712 | 420 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 3539 | CG8841-RB | 1946..2726 | 800..19 | 3870 | 99.7 | Minus |
| CG8841-RA | 3460 | CG8841-RA | 1867..2647 | 800..19 | 3870 | 99.7 | Minus |
| CG8841-RC | 3530 | CG8841-RC | 1937..2717 | 800..19 | 3870 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12323320..12324100 | 19..800 | 3845 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:08:46 has no hits.
BO15439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:56 Download gff for
BO15439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1731..2514 | 18..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:01 Download gff for
BO15439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1731..2514 | 18..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:50:35 Download gff for
BO15439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 1937..2717 | 19..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:39:45 Download gff for
BO15439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 1937..2717 | 19..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:39:45 Download gff for
BO15439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12323320..12324100 | 19..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:50:35 Download gff for
BO15439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8210825..8211605 | 19..800 | 99 | | Plus |
BO15439.5prime Sequence
833 bp (779 high quality bases) assembled on 2006-05-29
> BO15439.5prime
GAAGTTATCAGTCGACATGGGAAACACGGACTCCAAGTTGAACTTTCGCA
AGGCGATTGTGCAGCTGACGCAGAAGAACCAGAAGATCGACCCCAGCGAC
GAGCAGTTCTGGGAGCAGTTCTGGCAGGGCCACCAGACGACGCTGGAGGA
TGTGTTCGCGCTGGTCACCTCGAGCGAGATTCGCCAGATACGGAACGAGA
ATCCAGCCAACCTGGCCACCTTATGCTACAAGGCGGTGGAAAAGCTTGCC
CAGGCGGTAGACAGCAGTTGTCGCACGCAGGCGGAGCAGCAGTGCGTTTT
GAACTGCGTGCGGCTGCTCGTCCGGTGTCTGCCGTACATTTTCGAGGACG
AAAAGTGGCGCGACTTCTTCTGGAGCAGCCTGCCATCGCAGGACAAGACC
ATGCCGTTGGCTCAGTCACTGCTCAATGCCACCTGCGACCTTCTTTTCTG
TCCCGACTTCACGGTTACGGCCACGCGGCGTGCGGGCCCCGAGAAGGCCG
AGGAGTTGGCGAACATCGATAGCTGCGAGTACATTTGGGAAGCGGGCGTG
GGTTTCGCCCAGTCACCGCCCCACAACGCCCACATGGAGCGCAGGCGCAC
GGAGTTGCTGAAGCTATTACTCACCTGCTTCTCGGAGCCCATGTACCGAT
CGCCGCAGCAGTCCGAGGAGCCCAACAAGTGGATAGCATATTTCACCTCG
GCCGACAATCGCCATGCCCTGCCGCTGTTCACCTCGTTTCTGAACACCGT
GTGCTCCTACGATCCGGTGGGCTTCGGCGTGCCCTACAATCACCTGCTGT
TTGCAGACACCACAGAGCCCCTGGTGGAAGCGT
BO15439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-PC | 2514 | CG8841-RC | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG8841-PA | 2514 | CG8841-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG8841-PB | 2514 | CG8841-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 3539 | CG8841-RB | 216..1032 | 17..833 | 4085 | 100 | Plus |
| CG8841-RA | 3460 | CG8841-RA | 137..953 | 17..833 | 4085 | 100 | Plus |
| CG8841-RC | 3530 | CG8841-RC | 207..1023 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12325084..12325900 | 833..17 | 4085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:44:02 has no hits.
BO15439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:47:57 Download gff for
BO15439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:02 Download gff for
BO15439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-PB | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:54 Download gff for
BO15439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 207..1023 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:08 Download gff for
BO15439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 207..1023 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:08 Download gff for
BO15439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12325084..12325900 | 17..833 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:54 Download gff for
BO15439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8212589..8213405 | 17..833 | 100 | | Minus |
BO15439.complete Sequence
2545 bp assembled on 2006-10-11
GenBank Submission: FJ633464
> BO15439.complete
GAAGTTATCAGTCGACATGGGAAACACGGACTCCAAGTTGAACTTTCGCA
AGGCGATTGTGCAGCTGACGCAGAAGAACCAGAAGATCGACCCCAGCGAC
GAGCAGTTCTGGGAGCAGTTCTGGCAGGGCCACCAGACGACGCTGGAGGA
TGTGTTCGCGCTGGTCACCTCGAGCGAGATTCGCCAGATACGGAACGAGA
ATCCAGCCAACCTGGCCACCTTATGCTACAAGGCGGTGGAAAAGCTTGCC
CAGGCGGTAGACAGCAGTTGTCGCACGCAGGCGGAGCAGCAGTGCGTTTT
GAACTGCGTGCGGCTGCTCGTCCGGTGTCTGCCGTACATTTTCGAGGACG
AAAAGTGGCGCGACTTCTTCTGGAGCAGCCTGCCATCGCAGGACAAGACC
ATGCCGTTGGCTCAGTCACTGCTCAATGCCACCTGCGACCTTCTTTTCTG
TCCCGACTTCACGGTTACGGCCACGCGGCGTGCGGGCCCCGAGAAGGCCG
AGGAGTTGGCGAACATCGATAGCTGCGAGTACATTTGGGAAGCGGGCGTG
GGTTTCGCCCAGTCACCGCCCCACAACGCCCACATGGAGCGCAGGCGCAC
GGAGTTGCTGAAGCTATTACTCACCTGCTTCTCGGAGCCCATGTACCGAT
CGCCGCAGCAGTCCGAGGAGCCCAACAAGTGGATAGCATATTTCACCTCG
GCCGACAATCGCCATGCCCTGCCGCTGTTCACCTCGTTTCTGAACACCGT
GTGCTCCTACGATCCGGTGGGCTTCGGCGTGCCCTACAATCACCTGCTGT
TTGCAGACACCACAGAGCCCCTGGTGGAAGCGTGCCTTCAACTGCTCATT
GTCACCTTGGATCACGATATGGTGGTGCAGCAGCAACTCACACAACCCGG
ACAGGCGTCCTACGACGAGGGCAATTGCGGCGACAACTTGTTCATTAACT
ATCTTTCGAGGGTTCACCGCGACGAGGACTTTCACTTTGTGCTCAAGGGC
ATAACCAGGCTGCTGAACAACCCACTGGTCCAGAACTATTTGCCCAATTC
CACAAAGCGACTTCATTGCCACCAGGAGCTGCTTATTTTGTTTTGGAAAA
TATGCGACTACAACAAAAAGTTTCTGTATTTTGTGCTAAAGAGCTCCGAT
GTTCTGGACATCCTGATTCCCATTCTGTATCACCTAAACTACTCCCGAGC
GGATCAATCTCGAGTGGGCTTGATGCATATTGGAGTATTCATACTGTTGC
TCCTATCGGGTGAGCGAAACTTTGGGGTTCGGCTTAACAAAGCATACTCC
GCCACGGTGCCCATGGATATACCTGTGTTTACTGGAACCCATGCGGACTT
ACTCATCACTGTGTTCCACAAAATAATAGCCACTGGCCACCAGAGGCTGC
AGCCGCTTTTCGATTGTCTGCTGACCATTCTGGTAAATGTCTCACCATAT
CTGAAAACCCTCTCGATGGTGGCTAGTGTAAAGATGTTGCATCTCCTGGA
GGCTTTTAGCACACCCTGGTTTCTGCTATCGGCACCCAGCAATCATCATT
TGGTGTTTTTCCTGCTGGAGATCTTCAATAACATTATACAGTATCAGTTC
GATGGCAACTCGAATCTAGTCTACACCATAATTCGAAAGCGTCATGTGTT
CCATGCCATGGCAAATCTCCCGACCGATATGGCTGGCATAGCCAAGTGCC
TGAGTGGCCGTAAAACAGGTGGAAAGTTTAACTTGCCGCGGGTACCACAG
CGAAGAACGCCAGCTGTGTCCCAGGAACTGCCCTCGGCCCACGTGCCAGA
AGAGTACAACGAAGAAGACGAGGATGAGGACGAGGAGGAGATAATTAATG
AAGAGCCCAAGGCGGAAGAGGATCTCGAATCGGAGACAGAGTCTCATGAG
CGATCTCAGGCGGGGGAGCTGCAGTCGGACGTTCTCACGGCGCAGCCAGC
CGAGCCAGGAACACTGAAAACGTCCTTGTTGGACACCCCGGGCATTACTC
AGATGACGGAGCGGGAGCAGGCGCATCCAAATGACAAGCCTCAGGTGGAG
GATTCTACAGACATTGTGCCCTACGACAGATCAGCCGCTTCGACGCCAAC
TGACGAACGCAAGTCCACCTCACCCACGGAATTGTCCCGCTTGTCGGTGG
CCCACAGGGCCAGCATTCGCATGGTGCCTGGCGAGAGCGATCGTTGGACG
CCCACGCCCGAGTGGATCGTCTCCTGGCGCTCCAAGCTGCCGCTGCAGAC
CATCATGCGACTGCTTCAGGTCCTAGTGCCCCAGGTGGAGAAGATCTGCA
TTGACAAAGGACTGACCGACGAGTCGGAGATCCTCAAGTTTCTGCAACAC
GGAACGTTAGTGGGACTGCTCCCAGTGCCGCATCCCATTCTCATCCGAAA
GTACCAGGCCAATGCGGGCACAACGGCATGGTTCCGCACCTACATCTGGG
GTGTCATCTACCTGCGCAACGTGGAGCCTGCCATCTGGTACGATACGGAG
GTCAAGCTCTTCGAGATTCAGCGCGTCGCAAGCTTTCTAGACCAT
BO15439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 2514 | CG8841-PB | 1..2511 | 17..2527 | 12555 | 100 | Plus |
| CG8841-RA | 2514 | CG8841-PA | 1..2511 | 17..2527 | 12555 | 100 | Plus |
| CG8841-RC | 2514 | CG8841-PC | 1..2511 | 17..2527 | 12555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-RB | 3539 | CG8841-RB | 216..2726 | 17..2527 | 12555 | 100 | Plus |
| CG8841-RA | 3460 | CG8841-RA | 137..2647 | 17..2527 | 12555 | 100 | Plus |
| CG8841-RC | 3530 | CG8841-RC | 207..2717 | 17..2527 | 12555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12323320..12324588 | 2527..1259 | 6345 | 100 | Minus |
| 2R | 25286936 | 2R | 12324653..12325900 | 1264..17 | 6240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:58:44 has no hits.
BO15439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:46 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RB | 1..2514 | 17..2528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:21 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RB | 193..2703 | 17..2527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:38 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 207..2717 | 17..2529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:47 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RB | 193..2703 | 17..2527 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:31 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8841-RC | 207..2717 | 17..2529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:31 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12323318..12324587 | 1260..2529 | 99 | <- | Minus |
| 2R | 12324658..12325900 | 17..1259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:38 Download gff for
BO15439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8210823..8212092 | 1260..2529 | 99 | <- | Minus |
| arm_2R | 8212163..8213405 | 17..1259 | 100 | | Minus |
BO15439.pep Sequence
Translation from 16 to 2545
> BO15439.pep
MGNTDSKLNFRKAIVQLTQKNQKIDPSDEQFWEQFWQGHQTTLEDVFALV
TSSEIRQIRNENPANLATLCYKAVEKLAQAVDSSCRTQAEQQCVLNCVRL
LVRCLPYIFEDEKWRDFFWSSLPSQDKTMPLAQSLLNATCDLLFCPDFTV
TATRRAGPEKAEELANIDSCEYIWEAGVGFAQSPPHNAHMERRRTELLKL
LLTCFSEPMYRSPQQSEEPNKWIAYFTSADNRHALPLFTSFLNTVCSYDP
VGFGVPYNHLLFADTTEPLVEACLQLLIVTLDHDMVVQQQLTQPGQASYD
EGNCGDNLFINYLSRVHRDEDFHFVLKGITRLLNNPLVQNYLPNSTKRLH
CHQELLILFWKICDYNKKFLYFVLKSSDVLDILIPILYHLNYSRADQSRV
GLMHIGVFILLLLSGERNFGVRLNKAYSATVPMDIPVFTGTHADLLITVF
HKIIATGHQRLQPLFDCLLTILVNVSPYLKTLSMVASVKMLHLLEAFSTP
WFLLSAPSNHHLVFFLLEIFNNIIQYQFDGNSNLVYTIIRKRHVFHAMAN
LPTDMAGIAKCLSGRKTGGKFNLPRVPQRRTPAVSQELPSAHVPEEYNEE
DEDEDEEEIINEEPKAEEDLESETESHERSQAGELQSDVLTAQPAEPGTL
KTSLLDTPGITQMTEREQAHPNDKPQVEDSTDIVPYDRSAASTPTDERKS
TSPTELSRLSVAHRASIRMVPGESDRWTPTPEWIVSWRSKLPLQTIMRLL
QVLVPQVEKICIDKGLTDESEILKFLQHGTLVGLLPVPHPILIRKYQANA
GTTAWFRTYIWGVIYLRNVEPAIWYDTEVKLFEIQRVASFLDH
BO15439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8841-PB | 837 | CG8841-PB | 1..837 | 1..837 | 4411 | 100 | Plus |
| CG8841-PA | 837 | CG8841-PA | 1..837 | 1..837 | 4411 | 100 | Plus |
| CG8841-PC | 837 | CG8841-PC | 1..837 | 1..837 | 4411 | 100 | Plus |
