Clone Sequence Records
BO15440.3prime Sequence
756 bp (704 high quality bases) assembled on 2006-05-29
> BO15440.3prime
ATGGTCTAGAAAGCTTGCGGTGACGAAAAAAGTGAAGTGACTGATCTCGT
CGAGGGTCTGGGCGGCCTCCCCACGGAGTGCCGGGTACGAGTGGTGCTCA
GAGAGTTGTTGCAGCGCAAATCGCAGCTCTCCATTCCATATGCGCTGCAC
GCCGCGCAGGCTGAAGCGGGCCAGCAGGCGCAGCAGCTGACAGGAACGTT
GCCGCAACAGGTGGTGTCGGCTCTGCAGGAGCGAGACGAAGTTTAGCCGC
GGATTAAAGACAATCCGTTCTACAAGCTCCGCGTTTTCGGGCAGCTCGCG
CAGCACACAGCCCATCAGGGCCAACATGCACCCAGCCAGGCGAACAGAGG
CGGCGTCTGAATCCGATTGCCTGAAGTCGTGCGTGAGGAAGTTGAGGAAC
AGATCGCTTGCTGCCAGAATGGCAACCGCATCGCAGAACTGCGTTAGGAA
CTGCTGCTGCAGGTGTACCAAGTGGCAGACCAGTTCGTACAGACTGCAAG
CCGTCTCCAGCTCCTCGACAGTTAGCTCCGGAATGCTACGCAACGTTCGA
CTGAGCGAACCCGTGGTGAGTGGGGCGGAGGCAGCCGAGTCCGAGAGTTG
TTTGTGCGACAGGAGCAGCTTGCAGGCGTACATGAGATTGGGCACCAGTT
TTACGTCCACGTACACGTTGCGGATGAGCTCGAGGTCAACAATCAAAACA
GGATCCACCAGCACAAAGGGCAACGACAGCAACTGGGCCACACTCTTGAG
TACCCG
BO15440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6551-PA | 2418 | fu-RA | 1678..2415 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu-RA | 3251 | CG6551-RA | 1763..2500 | 756..19 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18659648..18660026 | 756..378 | 1895 | 100 | Minus |
| X | 23542271 | X | 18660094..18660453 | 378..19 | 1800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:03:41 has no hits.
BO15440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:47:58 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:03 Download gff for
BO15440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6551-PA | 1678..2418 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:28:46 Download gff for
BO15440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 1763..2504 | 13..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:05 Download gff for
BO15440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 1763..2504 | 13..756 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:05 Download gff for
BO15440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18659648..18660026 | 378..756 | 100 | -> | Minus |
| X | 18660095..18660457 | 13..377 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:28:46 Download gff for
BO15440.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18553681..18554059 | 378..756 | 100 | -> | Minus |
| arm_X | 18554128..18554490 | 13..377 | 99 | | Minus |
BO15440.5prime Sequence
798 bp (778 high quality bases) assembled on 2006-05-29
> BO15440.5prime
GAAGTTATCAGTCGACATGAACCGCTACGCGGTAAGCTCGATGGTGGGGC
AAGGATCCTTCGGGTGCGTATACAAGGCGACACGCAAGGACGACAGCAAG
GTGGTGGCCATCAAAGTGATCTCCAAGCGCGGAAGAGCCACGAAAGAGCT
GAAGAATTTGCGCAGGGAGTGCGACATTCAGGCCCGGCTGAAGCATCCGC
ACGTCATCGAGATGATCGAGTCCTTCGAGTCGAAGACGGACCTTTTCGTG
GTCACTGAGTTCGCGCTGATGGACCTGCACCGCTACCTGTCCTACAATGG
AGCCATGGGCGAGGAGCCGGCACGTCGGGTGACCGGGCATCTGGTGTCCG
CTCTGTACTACCTGCATTCAAACCGCATCCTCCACCGGGATCTCAAACCG
CAAAACGTGCTGCTCGACAAGAACATGCACGCGAAACTCTGCGACTTTGG
ACTGGCCCGCAACATGACCCTGGGTACCCACGTGCTCACCTCGATCAAGG
GAACGCCCCTCTACATGGCCCCGGAGCTGCTGGCGGAGCAGCCGTACGAC
CATCATGCGGACATGTGGTCACTGGGCTGCATAGCCTACGAAAGCATGGC
CGGTCAGCCGCCCTTCTGTGCCAGCTCCATCCTGCATCTGGTGAAGATGA
TCAAGCACGAGGACGTCAAGTGGCCGAGCACGCTGACTAGCGAGTGCCGC
TCCTTCCTACAGGGCCTGCTTGAGAAGGACCCCGGTCTGCGCATATCCTG
GACGCAGCTGTTGTGTCACCCCTTCGTTGAGGGACGCATCTTTATCGC
BO15440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6551-PA | 2418 | fu-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu-RA | 3251 | CG6551-RA | 85..867 | 16..798 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18658021..18658693 | 126..798 | 3365 | 100 | Plus |
| X | 23542271 | X | 18657839..18657950 | 16..127 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:35:25 has no hits.
BO15440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:47:59 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:04 Download gff for
BO15440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6551-PA | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:10:47 Download gff for
BO15440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 85..867 | 16..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:05 Download gff for
BO15440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 85..867 | 16..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:05 Download gff for
BO15440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18657839..18657950 | 16..127 | 100 | -> | Plus |
| X | 18658023..18658693 | 128..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:10:47 Download gff for
BO15440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18551872..18551983 | 16..127 | 100 | -> | Plus |
| arm_X | 18552056..18552726 | 128..798 | 100 | | Plus |
BO15440.complete Sequence
2449 bp assembled on 2006-10-11
GenBank Submission: FJ633465
> BO15440.complete
GAAGTTATCAGTCGACATGAACCGCTACGCGGTAAGCTCGATGGTGGGGC
AAGGATCCTTCGGGTGCGTATACAAGGCGACACGCAAGGACGACAGCAAG
GTGGTGGCCATCAAAGTGATCTCCAAGCGCGGAAGAGCCACGAAAGAGCT
GAAGAATTTGCGCAGGGAGTGCGACATTCAGGCCCGGCTGAAGCATCCGC
ACGTCATCGAGATGATCGAGTCCTTCGAGTCGAAGACGGACCTTTTCGTG
GTCACTGAGTTCGCGCTGATGGACCTGCACCGCTACCTGTCCTACAATGG
AGCCATGGGCGAGGAGCCGGCACGTCGGGTGACCGGGCATCTGGTGTCCG
CTCTGTACTACCTGCATTCAAACCGCATCCTCCACCGGGATCTCAAACCG
CAAAACGTGCTGCTCGACAAGAACATGCACGCGAAACTCTGCGACTTTGG
ACTGGCCCGCAACATGACCCTGGGTACCCACGTGCTCACCTCGATCAAGG
GAACGCCCCTCTACATGGCCCCGGAGCTGCTGGCGGAGCAGCCGTACGAC
CATCATGCGGACATGTGGTCACTGGGCTGCATAGCCTACGAAAGCATGGC
CGGTCAGCCGCCCTTCTGTGCCAGCTCCATCCTGCATCTGGTGAAGATGA
TCAAGCACGAGGACGTCAAGTGGCCGAGCACGCTGACTAGCGAGTGCCGC
TCCTTCCTACAGGGCCTGCTTGAGAAGGACCCCGGTCTGCGCATATCCTG
GACGCAGCTGTTGTGTCACCCCTTCGTTGAGGGACGCATCTTTATCGCAG
AAACGCAGGCGGAGGCGGCCAAGGAATCGCCTTTCACAAATCCCGAAGCC
AAGGTTAAGTCGTCAAAACAGTCCGATCCGGAGGTAGGCGATCTGGACGA
GGCCCTGGCCGCTTTGGACTTTGGCGAGTCGCGACAGGAAAACTTGACCA
CCTCCCGCGACAGCATAAACGCCATTGCTCCCAGCGATGTTGAGCATCTT
GAGACCGATGTGGAGGACAATATGCAACGTGTGGTCGTTCCCTTCGCGGA
CTTGTCCTACAGGGATCTGTCTGGTGTTCGGGCAATGCCGATGGTACACC
AGCCGGTGATCAACTCGCACACTTGCTTCGTCAGTGGCAACTCCAATATG
ATCCTCAATCATATGAACGACAACTTCGACTTTCAGGCTTCCTTGCGGGG
CGGAGGCGTGGCCGCTAAGCCAATAGTCGCTCCAACCGTACGCCAGTCGC
GCAGCAAGGATCTAGAGAAGCGTAAGCTTAGTCAGAATCTGGATAACTTC
TCTGTTCGCTTGGGTCACAGCGTCGACCATGAGGCGCAACGCAAGGCCAC
GGAGATTGCTACACAGGAAAAGCATAACCAGGAAAACAAGCCTCCCGCTG
AAGCAATTTCCTACGCAAATTCTCAGCCCCCGCAGCAACAGCCACAACAA
CTTAAACACTCAATGCATTCCACCAATGAGGAAAAGCTGAGCAGCGACAA
CACTCCGCCGTGCCTGCTCCCGGGGTGGGATAGCTGCGATGAATCCCAAA
GTCCGCCCATCGAGAACGATGAGTGGCTAGCCTTCTTGAACAGATCGGTG
CAGGAGCTGCTTGACGGCGAACTGGACTCATTGAAACAGCACAACCTGGT
GAGCATTATTGTGGCACCGCTGCGCAACTCCAAGGCCATTCCACGGGTAC
TCAAGAGTGTGGCCCAGTTGCTGTCGTTGCCCTTTGTGCTGGTGGATCCT
GTTTTGATTGTTGACCTCGAGCTCATCCGCAACGTGTACGTGGACGTAAA
ACTGGTGCCCAATCTCATGTACGCCTGCAAGCTGCTCCTGTCGCACAAAC
AACTCTCGGACTCGGCTGCCTCCGCCCCACTCACCACGGGTTCGCTCAGT
CGAACGTTGCGTAGCATTCCGGAGCTAACTGTCGAGGAGCTGGAGACGGC
TTGCAGTCTGTACGAACTGGTCTGCCACTTGGTACACCTGCAGCAGCAGT
TCCTAACGCAGTTCTGCGATGCGGTTGCCATTCTGGCAGCAAGCGATCTG
TTCCTCAACTTCCTCACGCACGACTTCAGGCAATCGGATTCAGACGCCGC
CTCTGTTCGCCTGGCTGGGTGCATGTTGGCCCTGATGGGCTGTGTGCTGC
GCGAGCTGCCCGAAAACGCGGAGCTTGTAGAACGGATTGTCTTTAATCCG
CGGCTAAACTTCGTCTCGCTCCTGCAGAGCCGACACCACCTGTTGCGGCA
ACGTTCCTGTCAGCTGCTGCGCCTGCTGGCCCGCTTCAGCCTGCGCGGCG
TGCAGCGCATATGGAATGGAGAGCTGCGATTTGCGCTGCAACAACTCTCT
GAGCACCACTCGTACCCGGCACTCCGTGGGGAGGCCGCCCAGACCCTCGA
CGAGATCAGTCACTTCACTTTTTTCGTCACCGCAAGCTTTCTAGACCAT
BO15440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu-RA | 2418 | CG6551-PA | 1..2415 | 17..2431 | 12075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu-RA | 3251 | CG6551-RA | 85..2500 | 16..2431 | 12080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18658021..18659392 | 126..1497 | 6860 | 100 | Plus |
| X | 23542271 | X | 18659452..18660026 | 1498..2072 | 2875 | 100 | Plus |
| X | 23542271 | X | 18660094..18660453 | 2072..2431 | 1800 | 100 | Plus |
| X | 23542271 | X | 18657839..18657950 | 16..127 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:27 has no hits.
BO15440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:50 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 1..2418 | 17..2432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:23 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 86..2505 | 16..2437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:40 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 86..2500 | 17..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:50 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 86..2505 | 16..2437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:13 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu-RA | 86..2500 | 17..2433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:13 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18657840..18657950 | 17..127 | 100 | -> | Plus |
| X | 18658023..18659392 | 128..1497 | 100 | -> | Plus |
| X | 18659452..18660026 | 1498..2072 | 100 | -> | Plus |
| X | 18660095..18660453 | 2073..2433 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:40 Download gff for
BO15440.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18551873..18551983 | 17..127 | 100 | -> | Plus |
| arm_X | 18552056..18553425 | 128..1497 | 100 | -> | Plus |
| arm_X | 18553485..18554059 | 1498..2072 | 100 | -> | Plus |
| arm_X | 18554128..18554486 | 2073..2433 | 99 | | Plus |
BO15440.pep Sequence
Translation from 16 to 2449
> BO15440.pep
MNRYAVSSMVGQGSFGCVYKATRKDDSKVVAIKVISKRGRATKELKNLRR
ECDIQARLKHPHVIEMIESFESKTDLFVVTEFALMDLHRYLSYNGAMGEE
PARRVTGHLVSALYYLHSNRILHRDLKPQNVLLDKNMHAKLCDFGLARNM
TLGTHVLTSIKGTPLYMAPELLAEQPYDHHADMWSLGCIAYESMAGQPPF
CASSILHLVKMIKHEDVKWPSTLTSECRSFLQGLLEKDPGLRISWTQLLC
HPFVEGRIFIAETQAEAAKESPFTNPEAKVKSSKQSDPEVGDLDEALAAL
DFGESRQENLTTSRDSINAIAPSDVEHLETDVEDNMQRVVVPFADLSYRD
LSGVRAMPMVHQPVINSHTCFVSGNSNMILNHMNDNFDFQASLRGGGVAA
KPIVAPTVRQSRSKDLEKRKLSQNLDNFSVRLGHSVDHEAQRKATEIATQ
EKHNQENKPPAEAISYANSQPPQQQPQQLKHSMHSTNEEKLSSDNTPPCL
LPGWDSCDESQSPPIENDEWLAFLNRSVQELLDGELDSLKQHNLVSIIVA
PLRNSKAIPRVLKSVAQLLSLPFVLVDPVLIVDLELIRNVYVDVKLVPNL
MYACKLLLSHKQLSDSAASAPLTTGSLSRTLRSIPELTVEELETACSLYE
LVCHLVHLQQQFLTQFCDAVAILAASDLFLNFLTHDFRQSDSDAASVRLA
GCMLALMGCVLRELPENAELVERIVFNPRLNFVSLLQSRHHLLRQRSCQL
LRLLARFSLRGVQRIWNGELRFALQQLSEHHSYPALRGEAAQTLDEISHF
TFFVTASFLDH
BO15440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu-PA | 805 | CG6551-PA | 1..805 | 1..805 | 4148 | 100 | Plus |
| SAK-PA | 769 | CG7186-PA | 14..267 | 4..254 | 402 | 34.6 | Plus |
| Sik3-PA | 702 | CG15072-PA | 41..335 | 4..301 | 386 | 32.8 | Plus |
| CG8866-PB | 465 | CG8866-PB | 9..279 | 4..268 | 380 | 32 | Plus |
| CG8866-PA | 520 | CG8866-PA | 9..279 | 4..268 | 380 | 32 | Plus |
