Clone BO15441 Report

Search the DGRC for BO15441

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG4911-RA
Protein status:BO15441.pep: Imported from assembly
Sequenced Size:1384

Clone Sequence Records

BO15441.5prime Sequence

742 bp (739 high quality bases) assembled on 2006-05-29

> BO15441.5prime
GAAGTTATCAGTCGACATGAATTTTAGCCAACGCCAACCAGAATGGCACA
GAATACCATCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAG
GATCGTCGGTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATT
TCAAAAACGCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCG
ATGATCAGTTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAA
CTGATAGTAGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCG
AGGACTTCTATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTT
TCCAAACCCACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAG
CACTTGTTGGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTT
AAGCCGCAAGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGG
CCCTCTCATACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAG
GAACTGCTGCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTA
TCCCATCCTCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGC
AGGTGCTCTCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACT
ATCCAGGTGCTTCCGCTGCGGAAACTTTTGATCGCAGTGCAC

BO15441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PA 1353 CG4911-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 4775 CG4911-RC 102..827 17..742 3630 100 Plus
CG4911-RB 2318 CG4911-RB 102..827 17..742 3630 100 Plus
CG4911-RA 2321 CG4911-RA 102..827 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9071200..9071521 742..421 1610 100 Minus
3L 28110227 3L 9071746..9071902 315..159 785 100 Minus
3L 28110227 3L 9072488..9072630 159..17 715 100 Minus
3L 28110227 3L 9071583..9071691 420..312 530 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 01:20:02 has no hits.

BO15441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:00 Download gff for BO15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:05 Download gff for BO15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:32 Download gff for BO15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 94..827 7..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:29 Download gff for BO15441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 94..827 7..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:29 Download gff for BO15441.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9071200..9071521 421..742 100 <- Minus
3L 9071583..9071687 316..420 100 <- Minus
3L 9071746..9071901 160..315 100 <- Minus
3L 9072488..9072638 7..159 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:32 Download gff for BO15441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9064300..9064621 421..742 100 <- Minus
arm_3L 9064683..9064787 316..420 100 <- Minus
arm_3L 9064846..9065001 160..315 100 <- Minus
arm_3L 9065588..9065738 7..159 97   Minus

BO15441.complete Sequence

1384 bp assembled on 2008-08-14

GenBank Submission: FJ633466

> BO15441.complete
GAAGTTATCAGTCGACATGAATTTTAGCCAACGCCAACCAGAATGGCACA
GAATACCATCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAG
GATCGTCGGTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATT
TCAAAAACGCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCG
ATGATCAGTTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAA
CTGATAGTAGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCG
AGGACTTCTATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTT
TCCAAACCCACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAG
CACTTGTTGGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTT
AAGCCGCAAGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGG
CCCTCTCATACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAG
GAACTGCTGCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTA
TCCCATCCTCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGC
AGGTGCTCTCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACT
ATCCAGGTGCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGGA
TAGCGAAGAGCATCCCGATGTGTCGGAGACGGCCTGGTCCAACTTTTCGG
ATCACTTTTCGAGCATTGAGTTGGTGCTGACCCTTGTGTATGCCTATGAG
GCCATCGCACTACTGCAGCATCGTGTGCTGCGTAGCAATATGCCTGTAAC
CCATGTGCGACTGCTATTCTGCGAAAAGATGAACGCCGAAGCCTTGGACT
GGATGTCGTTGCATTACAGGGAAACTCTGCGCAGCATTCACTATGTGGAC
GCGCCGTACAAATATTCCAATCGCATGAACTCCAGTCGCCGTGTCTCTTT
ACTCCAGGATCCATTCGTAATGATGGCCTGGCGCTGCAAACAGCTGGAGG
AGATCGTAGTGCACGGGTACTTGATGGATCCGCATAACCTCGTGGGCATT
GCCCGTCTTCGGGGTCGGCAGCTAAAGCGTCTGGAAGTCTCCATGATCGA
TTGGTCAGGCGCTCCTTTGCTGAACGCCTACAATGAAGAGATAAGCACCT
TACTGGGACAACAATGGTCACCCATCAGCTTTGACAAAATGCCGCCATCG
TTGTTCTACGACAACGATTTACGCGATCAGTTCGTGTACGAAATGCTGCG
CCAGGATCTCCGCCAGGCAAGCTTTCTAGACCAT

BO15441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 1353 CG4911-PC 1..1350 17..1366 6750 100 Plus
CG4911-RA 1353 CG4911-PA 1..1350 17..1366 6750 100 Plus
CG4911-RB 1350 CG4911-PB 1..1347 17..1366 6670 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-RC 4775 CG4911-RC 102..1451 17..1366 6750 100 Plus
CG4911-RA 2321 CG4911-RA 102..1451 17..1366 6750 100 Plus
CG4911-RB 2318 CG4911-RB 102..1448 17..1366 6670 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9070704..9071521 1238..421 4090 100 Minus
3L 28110227 3L 9071746..9071902 315..159 785 100 Minus
3L 28110227 3L 9072488..9072630 159..17 715 100 Minus
3L 28110227 3L 9070519..9070647 1366..1238 645 100 Minus
3L 28110227 3L 9071583..9071691 420..312 530 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 20:52:58 has no hits.

BO15441.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:11 Download gff for BO15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 92..1453 7..1371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:30 Download gff for BO15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 102..1451 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:53 Download gff for BO15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 100..1449 17..1368 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:15 Download gff for BO15441.complete
Subject Subject Range Query Range Percent Splice Strand
CG4911-RA 102..1451 17..1368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:15 Download gff for BO15441.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9072488..9072630 17..159 100   Minus
3L 9070517..9070647 1238..1368 98 <- Minus
3L 9070705..9071521 421..1237 100 <- Minus
3L 9071583..9071687 316..420 100 <- Minus
3L 9071746..9071901 160..315 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:30 Download gff for BO15441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9063617..9063747 1238..1368 98 <- Minus
arm_3L 9063805..9064621 421..1237 100 <- Minus
arm_3L 9064683..9064787 316..420 100 <- Minus
arm_3L 9064846..9065001 160..315 100 <- Minus
arm_3L 9065588..9065730 17..159 100   Minus

BO15441.pep Sequence

Translation from 16 to 1384

> BO15441.pep
MNFSQRQPEWHRIPSVALNHIFDYLNPQDRRSAAGVCFSWRHALFQKRYF
RNFRFQLDVGCDDQLAFFHRSMANLAMELIVVFDFQNAVHIQKMRGLLYK
VAHCDNIQKLRFQTHNVGLVAIGNMHSEHLLAIEQCFVEPLILFLSRKRQ
PCQLLDLGAIEALSYYGHDFLKAMGKPQELLQLTLASIKYDPSHYPILSL
DSTLLQKCAALQVLSLDYDTLSDELLHTIQVLPLRKLLIAVHGLDSEEHP
DVSETAWSNFSDHFSSIELVLTLVYAYEAIALLQHRVLRSNMPVTHVRLL
FCEKMNAEALDWMSLHYRETLRSIHYVDAPYKYSNRMNSSRRVSLLQDPF
VMMAWRCKQLEEIVVHGYLMDPHNLVGIARLRGRQLKRLEVSMIDWSGAP
LLNAYNEEISTLLGQQWSPISFDKMPPSLFYDNDLRDQFVYEMLRQDLRQ
ASFLDH

BO15441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4911-PC 450 CG4911-PC 1..450 1..450 2363 100 Plus
CG4911-PA 450 CG4911-PA 1..450 1..450 2363 100 Plus
CG4911-PB 449 CG4911-PB 1..449 1..450 2346 99.8 Plus