Clone Sequence Records
BO15443.3prime Sequence
746 bp (685 high quality bases) assembled on 2006-05-29
> BO15443.3prime
ATGGTCTAGAAAGCTTGCGATGGGTATGGATAGCTCCCGGACAACAGCAC
GCAGCACCTCAGGTGTCTTGAACTGCCAGTTCTGGATGTTCTTGCTGACC
CGACACCAGGACTCGCCGTGCGTGGGCTCTGCAGAAATGCACCGATCGAG
GACCTCCTGCTGCTGCGCCTCCGTGCCGTGGAGTAATTCGAACTTGTAGA
AATATGCCCAAGCATCACCTAGATCTGGATCGATCTTGACAGTTCGATTA
AACCAGTCTCGGCACTTAGAGAACTTGTGCTCAGACCAGAACAGTTTTGA
TACAGCTAGCAGCACATGTGGATCGTGCTCGCATTTCTTGAGAGCATCCA
CTGACTTGGTCTTTCGCTGCGGCTTGGTTTCCATGAAGATAGCCTCCGCC
CATAGCTCACCAGCGTTGGGACATTCCTGCAGTGCTCTTGCCATCATTGT
GCTGGCAATCTCCTTGAGGCCCGCACGCAGCTCCACCCTGATGGCCTCCA
GCCAGAGCACAGCCACTTTGGGGTTGCGTAAACGTCCTCGTTCCAGAATG
GATCGAGCCTTCGTCAGCACTCCTTTGCGCTCTTCTAGATTGGCGGAAAG
AATCCAAAGTGGGATGGACGTAGGACACTTTTTCAAGCCCAGAGTATAGG
TGGCAGCCGCATCATCTGTCCGTCTCTGCTGCTCCTCCATCTGACCCTTC
ATCATCCACAGTTTGGGGAAATCTGGGAACACTTCCACCGCCTCCT
BO15443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-PA | 2796 | CG6841-RA | 2066..2793 | 746..19 | 3615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 2188..2915 | 746..19 | 3625 | 99.9 | Minus |
| CG6841-RA | 3309 | CG6841-RA | 2188..2915 | 746..19 | 3625 | 99.9 | Minus |
| CG14077-RB | 3077 | CG14077-RB | 2830..3051 | 19..240 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18907707..18908214 | 746..239 | 2525 | 99.8 | Minus |
| 3L | 28110227 | 3L | 18908286..18908507 | 240..19 | 1110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:50:22 has no hits.
BO15443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:03 Download gff for
BO15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 2066..2796 | 15..746 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:10 Download gff for
BO15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 2066..2796 | 15..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:50 Download gff for
BO15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 2188..2924 | 7..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:50:40 Download gff for
BO15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 2188..2924 | 7..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:50:40 Download gff for
BO15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18908286..18908516 | 7..240 | 98 | | Minus |
| 3L | 18907707..18908212 | 241..746 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:50 Download gff for
BO15443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18900807..18901312 | 241..746 | 99 | -> | Minus |
| arm_3L | 18901386..18901616 | 7..240 | 98 | | Minus |
BO15443.5prime Sequence
860 bp (756 high quality bases) assembled on 2006-05-29
> BO15443.5prime
GAAGTTATCACTCGACATGTCCAACATAACGGCGGCGGTTATAGCCAACC
GCAACAAAAAGCATTTCCTGGGCGTCCCAGCCCCATTGGGCTATGTTGCC
GGCGTCGGTCGTGGAGCGACAGGATTCACCACTCGGTCCGATATTGGTCC
TGCCCGTGATGCAAACGATGTATCCGACGACCGCCATGCTCCGCCGGCCA
CCAAACGTAAGAAAAAAGACGAAGAGGAGGAGGAGGACGAAGACTTGAAC
GACTCAAACTATGACGAGTTTAGTGGTTACAGCGGCTCCCTGTTCTCCAA
GGATCCGTACGACAAGGATGACGAGGAGGCGGACGCTATCTACGATTCGA
TAGACAAGCGAATGGACGAAAAGCGCAAAGAGTATCGTGATCGCCGGCTG
CGTGAGGATTTGGAGCGGTACCGCCAGGAGCGACCGAAGATCCAGCAGCA
GTTCAGTGACCTGAAACGCTCACTGGCCAGTGTCACATCGGAGGAGTGGT
CCACGATTCCTGAAGTGGGCGACAGTCGAAACAGAAAGCAACGAAATCCA
AGGGCCGAAAAGTTTACCCCTCTGCCGGACAGCTTGATATCCAGAAATCT
TGGCGGCGAGTCGTCCTCTACGTTGGATCCGTCCTCGGGCTTGGCTTCTA
TGGTGCCTGGCGTAGCTACTCCAGGCATGCTGACACCTACGGGTGATCTT
GATCTGCGAAAGATTGGCCAGGCTCGTAACACTCTTATGAACGTCAAGCT
TTCGCAGGTTTCCGATTCCGTGACAGGCCAAACGGTGGTGGATCCCAAGG
GCTATCTCACCGACCTGCAGAGTATGATTCCCACTTATGGTGGTGACATA
AACGACATCA
BO15443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-PA | 2796 | CG6841-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 123..966 | 17..860 | 4220 | 100 | Plus |
| CG6841-RA | 3309 | CG6841-RA | 123..966 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18905658..18906404 | 114..860 | 3735 | 100 | Plus |
| 3L | 28110227 | 3L | 18905494..18905591 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:14:50 has no hits.
BO15443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:04 Download gff for
BO15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:11 Download gff for
BO15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:56 Download gff for
BO15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 123..965 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:53 Download gff for
BO15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 123..965 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:53 Download gff for
BO15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18905494..18905591 | 17..114 | 100 | -> | Plus |
| 3L | 18905659..18906403 | 115..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:56 Download gff for
BO15443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18898594..18898691 | 17..114 | 100 | -> | Plus |
| arm_3L | 18898759..18899503 | 115..859 | 100 | | Plus |
BO15443.complete Sequence
2827 bp assembled on 2008-08-14
GenBank Submission: FJ633467
> BO15443.complete
GAAGTTATCACTCGACATGTCCAACATAACGGCGGCGGTTATAGCCAACC
GCAACAAAAAGCATTTCCTGGGCGTCCCAGCCCCATTGGGCTATGTTGCC
GGCGTCGGTCGTGGAGCGACAGGATTCACCACTCGGTCCGATATTGGTCC
TGCCCGTGATGCAAACGATGTATCCGACGACCGCCATGCTCCGCCGGCCA
CCAAACGTAAGAAAAAAGACGAAGAGGAGGAGGAGGACGAAGACTTGAAC
GACTCAAACTATGACGAGTTTAGTGGTTACAGCGGCTCCCTGTTCTCCAA
GGATCCGTACGACAAGGATGACGAGGAGGCGGACGCTATCTACGATTCGA
TAGACAAGCGAATGGACGAAAAGCGCAAAGAGTATCGTGATCGCCGGCTG
CGTGAGGATTTGGAGCGGTACCGCCAGGAGCGACCGAAGATCCAGCAGCA
GTTCAGTGACCTGAAACGCTCACTGGCCAGTGTCACATCGGAGGAGTGGT
CCACGATTCCTGAAGTGGGCGACAGTCGAAACAGAAAGCAACGAAATCCA
AGGGCCGAAAAGTTTACCCCTCTGCCGGACAGCTTGATATCCAGAAATCT
TGGCGGCGAGTCGTCCTCTACGTTGGATCCGTCCTCGGGCTTGGCTTCTA
TGGTGCCTGGCGTAGCTACTCCAGGCATGCTGACACCTACGGGTGATCTT
GATCTGCGAAAGATTGGCCAGGCTCGTAACACTCTTATGAACGTCAAGCT
TTCGCAGGTTTCCGATTCCGTGACAGGCCAAACGGTGGTGGATCCCAAGG
GCTATCTCACCGACCTGCAGAGTATGATTCCCACTTATGGTGGTGACATA
AACGACATCAAGAAGGCTCGTTTGTTGCTCAAGAGTGTGAGGGAAACGAA
TCCTAACCATCCACCAGCTTGGATTGCCTCCGCCCGTTTGGAAGAAGTGA
CTGGCAAGGTTCAGATGGCGAGGAATCTGATAATGCGGGGCTGCGAAATG
AACATCCAGTCTGAGGATCTCTGGCTGGAAGCAGCTCGCCTTCAGCCGCC
AGATACAGCCAAAGCGGTGATCGCGCAAGCGGCTCGTCATATTCCTACCT
CGGTCAGGATCTGGATTAAAGCCGCAGATCTGGAATCGGAGACCAAAGCT
AAGCGTAGAGTTTTCAGAAAAGCTCTAGAGCATATTCCAAATTCAGTTCG
TCTGTGGAAGGCGGCTGTGGAACTCGAGAATCCTGATGATGCACGGATTC
TACTCTCTCGCGCCGTGGAGTGCTGCAACACCAGCGTTGAACTTTGGTTG
GCTCTCGCCCGCTTGGAAACCTACGAGAACGCCCGAAAGGTTCTAAACAA
GGCTCGCGAGAATATTCCCACTGATCGCCAGATTTGGACCACAGCTGCTA
AGTTGGAGGAGGCCAATGGTAATATTCACATGGTGGAAAAGATCATTGAT
CGATCATTGACCTCGCTTACCGTCAACGGAGTGGAGATCAACCGTGATCA
GTGGTTCCAGGAGGCCATCGAGGCGGAAAAATCAGGAGCAGTCAACTGTT
GCCAATCCATTGTTAAGGCTGTCATTGGAATAGGAGTGGAGGAGGAGGAT
CGCAAGCAGACTTGGATTGATGATGCTGAATTCTGCGCAAAGGAAAATGC
ATTTGAGTGTGCTCGAGCTGTTTACGCTCATGCCCTCCAAATATTTCCCT
CGAAGAAAAGCATCTGGTTGCGAGCCGCCTACTTTGAAAAGAACCATGGC
ACCCGCGAATCTTTGGAGGCCCTGTTGCAGCGAGCCGTGGCTCATTGTCC
TAAATCGGAGATTCTCTGGTTGATGGGGGCCAAATCCAAATGGATGGCTG
GAGACGTTCCAGCCGCGAGAGGCATTTTGTCCTTGGCTTTCCAGGCCAAT
CCCAATTCCGAGGACATTTGGTTGGCTGCCGTTAAGTTGGAATCAGAGAA
CTCGGAATATGAGCGGGCGAGACGCTTGTTAGCCAAGGCTAGAGGATCGG
CACCGACACCAAGGGTGATGATGAAATCAGCTCGCCTGGAATGGGCTTTG
GAAAAGTTCGACGAAGCTCTGCGGTTGCTGGAGGAGGCGGTGGAAGTGTT
CCCAGATTTCCCCAAACTGTGGATGATGAAGGGTCAGATTGAGGAGCAGC
AGAGACGGACAGATGATGCGGCTGCCACCTATACTCTGGGCTTGAAAAAG
TGTCCTACGTCCATCCCACTTTGGATTCTTTCCGCCAATCTAGAAGAGCG
CAAAGGAGTGCTGACGAAGGCTCGATCCATTCTGGAACGAGGACGTTTAC
GCAACCCCAAAGTGGCTGTGCTCTGGCTGGAGGCCATCAGGGTGGAGCTG
CGTGCGGGCCTCAAGGAGATTGCCAGCACAATGATGGCAAGAGCACTGCA
GGAATGTCCCAACGCTGGTGAGCTATGGGCGGAGGCTATCTTCATGGAAA
CCAAGCCGCAGCGAAAGACCAAGTCAGTGGATGCTCTCAAGAAATGCGAG
CACGATCCACATGTGCTGCTAGCTGTATCAAAACTGTTCTGGTCTGAGCA
CAAGTTCTCTAAGTGCCGAGACTGGTTTAATCGAACTGTCAAGATCGATC
CAGATCTAGGTGATGCTTGGGCATATTTCTACAAGTTCGAATTACTCCAC
GGCACGGAGGCGCAGCAGCAGGAGGTCCTCGATCGGTGCATTTCTGCAGA
GCCCACGCACGGCGAGTCCTGGTGTCGGGTCAGCAAGAACATCCAGAACT
GGCAGTTCAAGACACCTGAGGTGCTGCGTGCTGTTGTCCGGGAGCTATCC
ATACCCATCGCAAGCTTTCTAGACCAT
BO15443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 2796 | CG6841-PB | 1..2793 | 17..2809 | 13950 | 100 | Plus |
| CG6841-RA | 2796 | CG6841-PA | 1..2793 | 17..2809 | 13950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-RB | 3382 | CG6841-RB | 123..2915 | 17..2809 | 13950 | 100 | Plus |
| CG6841-RA | 3309 | CG6841-RA | 123..2915 | 17..2809 | 13950 | 100 | Plus |
| CG14077-RB | 3077 | CG14077-RB | 2830..3051 | 2809..2588 | 1110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18905658..18907177 | 114..1633 | 7600 | 100 | Plus |
| 3L | 28110227 | 3L | 18907259..18908214 | 1634..2589 | 4765 | 99.9 | Plus |
| 3L | 28110227 | 3L | 18908286..18908507 | 2588..2809 | 1110 | 100 | Plus |
| 3L | 28110227 | 3L | 18905494..18905591 | 17..114 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:46:59 has no hits.
BO15443.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:07 Download gff for
BO15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 121..2922 | 17..2821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:26 Download gff for
BO15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 123..2915 | 17..2811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:41 Download gff for
BO15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 121..2913 | 17..2811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:51 Download gff for
BO15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6841-RA | 123..2915 | 17..2811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:51 Download gff for
BO15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18905494..18905591 | 17..114 | 100 | -> | Plus |
| 3L | 18905659..18907177 | 115..1633 | 100 | -> | Plus |
| 3L | 18907259..18908212 | 1634..2587 | 99 | -> | Plus |
| 3L | 18908286..18908507 | 2588..2811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:26 Download gff for
BO15443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18898594..18898691 | 17..114 | 100 | -> | Plus |
| arm_3L | 18898759..18900277 | 115..1633 | 100 | -> | Plus |
| arm_3L | 18900359..18901312 | 1634..2587 | 99 | -> | Plus |
| arm_3L | 18901386..18901607 | 2588..2811 | 99 | | Plus |
BO15443.pep Sequence
Translation from 16 to 2827
> BO15443.pep
MSNITAAVIANRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDAN
DVSDDRHAPPATKRKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDK
DDEEADAIYDSIDKRMDEKRKEYRDRRLREDLERYRQERPKIQQQFSDLK
RSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSLISRNLGGESS
STLDPSSGLASMVPGVATPGMLTPTGDLDLRKIGQARNTLMNVKLSQVSD
SVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPP
AWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKA
VIAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAA
VELENPDDARILLSRAVECCNTSVELWLALARLETYENARKVLNKARENI
PTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEA
IEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECAR
AVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEIL
WLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYER
ARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPK
LWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLT
KARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNA
GELWAEAIFMETKPQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKC
RDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGE
SWCRVSKNIQNWQFKTPEVLRAVVRELSIPIASFLDH
BO15443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6841-PB | 931 | CG6841-PB | 1..931 | 1..931 | 4824 | 100 | Plus |
| CG6841-PA | 931 | CG6841-PA | 1..931 | 1..931 | 4824 | 100 | Plus |
| crn-PA | 702 | CG3193-PA | 79..554 | 302..778 | 211 | 22.6 | Plus |
