Clone Sequence Records
BO15447.3prime Sequence
758 bp (757 high quality bases) assembled on 2006-05-30
> BO15447.3prime
ATGGTCTAGAAAGCTTGCAGTATTCAGTATGCTAATTACTTTCTCCATGA
CGCGCGCCACTTTCAGGTTGATGCGCAACGTGCGAGCGTATTCGTAGTGA
TACGATTTCGGGGAATGCCCGCTTAAGTTCTCCTCGTCGGGATCGGCCAA
GTGCGCAAGCAGGAAGTAGCACAAGTGTTCCTGCTCCCCTTCCACGGCGT
AGAAAAGCGGTGGGTTTCCGCCCCTCGCCTCGGATGCATTGATGACATCC
CGCTTATGTGCACGGTTCTTTAGCAACGTCTTGTTCAGCTCCAGCCGTTC
GCAGGCACGATCGTAGTACTTGGCGAAGCCCTTCTCGTCCCACTCATTCG
GATTCGCTGCCTCCAGGGTTCTCCTGTACACCGTTTCCCCCAGCTCGCGC
TCGTCTATACTATCAAGGATTGCCTCGACAACAAGGAACTGGTTATTGCG
CACTGCCAGGTGCAAAACTGTATAACCATCATCGTTGGTTAGCAGAAGAC
TGTTCAAATCGATTCTGCGCAACAGCAGCCTAATGGACTCTATATTTATA
TGGTTTATCACCGCCAGATGAAGAGCTGTGTTTGAGTTCTCGTAGAGGTG
GTCGGTCATCATGCGAGCGTCCAGGATGAGCGATACAATCTCGGTGTCCG
TGTCGTTCGTCAGCGCAAGTTCCAGGCAGTCCTCGCCGTCCCTGGTGAGT
AGTTCGTTGATGTCCATTTTCGCGTGGCAGCACACAAATATCTGACGCTT
AACGCCGT
BO15447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-PA | 1575 | CG5118-RA | 833..1572 | 758..19 | 3700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-RA | 1801 | CG5118-RA | 1019..1758 | 758..19 | 3700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1171030..1171608 | 180..758 | 2895 | 100 | Plus |
| 2L | 23513712 | 2L | 1170796..1170957 | 19..180 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:02:58 has no hits.
BO15447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:09 Download gff for
BO15447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-PA | 833..1575 | 16..758 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:18 Download gff for
BO15447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-PA | 833..1575 | 16..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:42:12 Download gff for
BO15447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 1019..1758 | 19..758 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:16 Download gff for
BO15447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 1019..1758 | 19..758 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:16 Download gff for
BO15447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1170796..1170956 | 19..179 | 100 | <- | Plus |
| 2L | 1171030..1171608 | 180..758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:42:12 Download gff for
BO15447.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1170796..1170956 | 19..179 | 100 | <- | Plus |
| arm_2L | 1171030..1171608 | 180..758 | 100 | | Plus |
BO15447.5prime Sequence
801 bp (798 high quality bases) assembled on 2006-05-29
> BO15447.5prime
GAAGTTATCAGTCGACATGAAGAAGGTTCTATTGACCAAAGCCCAGCACA
TCCAACCAGTCGTCGCTAGTAGTTCGGATGTTTTGGTGATCAAACCAGTC
GGTTCCCTGCGAGTGATATCCATCTCAGCGCCACATAGTGCCTCTACCTA
CATCCAGCGCAAGTCCTTCCAGCCCGTCTACGAGGACATCTTCAAATTAC
TCATGAAAATCCCAGACAAAGCCCTTACCCAAAGGGTGATCGACGCGATA
AACGAGAGCAATAATAACGATAAGGTCGCTATCTCCAATCACGGTAAACA
ATGTTCGTGCGGAGTCCAAAAAGTCGATTCATCTACACAAACGGATTGGG
ACACCGAGGAAACGCATATGCCTGGCATTACAAATAATTCATGCGAAGCC
AAAGGGAATAGGCATAGCCACATGACCAGTTCAAGTTCCGAACCTATAAA
ACCGCCAGTAGATCCGACCAAAGTTCCTAAAAAGCGCGGTAGAAAGCGAA
ACACCTGCGTGCCACAGGTGGTCAAGCGATCAGCGGCTGAGATGGCGCTT
AAGGAGCGCGAGGAGAAGCAACTGACGCCCGTGATCACTAAACGGAAGAA
AAGGGATGTCACCCAAGCGCAAAACTTCGAATCATATCAGATCACGAATA
AAACCCCTGTACGCCGAAACTCTACCTTGTCGGATATATCGTTCAACTCC
GATGAGTTGACCCGGGTGGAAAACTTTATAAGCGGAAACACCGAGGACCG
CATTATACGCATCATGGCCAACGAATTCAGAAAGTCGCACATAATGTCCG
A
BO15447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-PA | 1575 | CG5118-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-RA | 1801 | CG5118-RA | 187..971 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1172023..1172619 | 613..17 | 2985 | 100 | Minus |
| 2L | 23513712 | 2L | 1171726..1171913 | 801..614 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:55:05 has no hits.
BO15447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:11 Download gff for
BO15447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:20 Download gff for
BO15447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:03 Download gff for
BO15447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 187..970 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:09 Download gff for
BO15447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 187..970 | 17..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:09 Download gff for
BO15447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1171727..1171913 | 614..800 | 100 | <- | Minus |
| 2L | 1172023..1172619 | 17..613 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:03 Download gff for
BO15447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1171727..1171913 | 614..800 | 100 | <- | Minus |
| arm_2L | 1172023..1172619 | 17..613 | 100 | | Minus |
BO15447.complete Sequence
1606 bp (1606 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633470
> BO15447.complete
GAAGTTATCAGTCGACATGAAGAAGGTTCTATTGACCAAAGCCCAGCACA
TCCAACCAGTCGTCGCTAGTAGTTCGGATGTTTTGGTGATCAAACCAGTC
GGTTCCCTGCGAGTGATATCCATCTCAGCGCCACATAGTGCCTCTACCTA
CATCCAGCGCAAGTCCTTCCAGCCCGTCTACGAGGACATCTTCAAATTAC
TCATGAAAATCCCAGACAAAGCCCTTACCCAAAGGGTGATCGACGCGATA
AACGAGAGCAATAATAACGATAAGGTCGCTATCTCCAATCACGGTAAACA
ATGTTCGTGCGGAGTCCAAAAAGTCGATTCATCTACACAAACGGATTGGG
ACACCGAGGAAACGCATATGCCTGGCATTACAAATAATTCATGCGAAGCC
AAAGGGAATAGGCATAGCCACATGACCAGTTCAAGTTCCGAACCTATAAA
ACCGCCAGTAGATCCGACCAAAGTTCCTAAAAAGCGCGGTAGAAAGCGAA
ACACCTGCGTGCCACAGGTGGTCAAGCGATCAGCGGCTGAGATGGCGCTT
AAGGAGCGCGAGGAGAAGCAACTGACGCCCGTGATCACTAAACGGAAGAA
AAGGGATGTCACCCAAGCGCAAAACTTCGAATCATATCAGATCACGAATA
AAACCCCTGTACGCCGAAACTCTACCTTGTCGGATATATCGTTCAACTCC
GATGAGTTGACCCGGGTGGAAAACTTTATAAGCGGAAACACCGAGGACCG
CATTATACGCATCATGGCCAACGAATTCAGAAAGTCGCACATAATGTCCG
AAGAAGGATTGCTACCCATTCACGAGGAAATACTGCACGGCGATGTTTAC
GGCGTTAAGCGTCAGATATTTGTGTGCTGCCACGCGAAAATGGACATCAA
CGAACTACTCACCAGGGACGGCGAGGACTGCCTGGAACTTGCGCTGACGA
ACGACACGGACACCGAGATTGTATCGCTCATCCTGGACGCTCGCATGATG
ACCGACCACCTCTACGAGAACTCAAACACAGCTCTTCATCTGGCGGTGAT
AAACCATATAAATATAGAGTCCATTAGGCTGCTGTTGCGCAGAATCGATT
TGAACAGTCTTCTGCTAACCAACGATGATGGTTATACAGTTTTGCACCTG
GCAGTGCGCAATAACCAGTTCCTTGTTGTCGAGGCAATCCTTGATAGTAT
AGACGAGCGCGAGCTGGGGGAAACGGTGTACAGGAGAACCCTGGAGGCAG
CGAATCCGAATGAGTGGGACGAGAAGGGCTTCGCCAAGTACTACGATCGT
GCCTGCGAACGGCTGGAGCTGAACAAGACGTTGCTAAAGAACCGTGCACA
TAAGCGGGATGTCATCAATGCATCCGAGGCGAGGGGCGGAAACCCACCGC
TTTTCTACGCCGTGGAAGGGGAGCAGGAACACTTGTGCTACTTCCTGCTT
GCGCACTTGGCCGATCCCGACGAGGAGAACTTAAGCGGGCATTCCCCGAA
ATCGTATCACTACGAATACGCTCGCACGTTGCGCATCAACCTGAAAGTGG
CGCGCGTCATGGAGAAAGTAATTAGCATACTGAATACTGCAAGCTTTCTA
GACCAT
BO15447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-RA | 1575 | CG5118-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-RA | 1801 | CG5118-RA | 187..1758 | 17..1588 | 7860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1171030..1171643 | 1427..814 | 3070 | 100 | Minus |
| 2L | 23513712 | 2L | 1172023..1172619 | 613..17 | 2985 | 100 | Minus |
| 2L | 23513712 | 2L | 1171714..1171913 | 813..614 | 1000 | 100 | Minus |
| 2L | 23513712 | 2L | 1170796..1170957 | 1588..1427 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:19:45 has no hits.
BO15447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:53:38 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 1..1575 | 17..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:09:50 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 127..1698 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:37 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 187..1758 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:38 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 127..1698 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:59 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5118-RA | 187..1758 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:59 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1170792..1170956 | 1428..1590 | 98 | <- | Minus |
| 2L | 1171030..1171643 | 814..1427 | 100 | <- | Minus |
| 2L | 1171714..1171913 | 614..813 | 100 | <- | Minus |
| 2L | 1172023..1172619 | 17..613 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:37 Download gff for
BO15447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1170792..1170956 | 1428..1590 | 98 | <- | Minus |
| arm_2L | 1171030..1171643 | 814..1427 | 100 | <- | Minus |
| arm_2L | 1171714..1171913 | 614..813 | 100 | <- | Minus |
| arm_2L | 1172023..1172619 | 17..613 | 100 | | Minus |
BO15447.pep Sequence
Translation from 16 to 1606
> BO15447.pep
MKKVLLTKAQHIQPVVASSSDVLVIKPVGSLRVISISAPHSASTYIQRKS
FQPVYEDIFKLLMKIPDKALTQRVIDAINESNNNDKVAISNHGKQCSCGV
QKVDSSTQTDWDTEETHMPGITNNSCEAKGNRHSHMTSSSSEPIKPPVDP
TKVPKKRGRKRNTCVPQVVKRSAAEMALKEREEKQLTPVITKRKKRDVTQ
AQNFESYQITNKTPVRRNSTLSDISFNSDELTRVENFISGNTEDRIIRIM
ANEFRKSHIMSEEGLLPIHEEILHGDVYGVKRQIFVCCHAKMDINELLTR
DGEDCLELALTNDTDTEIVSLILDARMMTDHLYENSNTALHLAVINHINI
ESIRLLLRRIDLNSLLLTNDDGYTVLHLAVRNNQFLVVEAILDSIDEREL
GETVYRRTLEAANPNEWDEKGFAKYYDRACERLELNKTLLKNRAHKRDVI
NASEARGGNPPLFYAVEGEQEHLCYFLLAHLADPDEENLSGHSPKSYHYE
YARTLRINLKVARVMEKVISILNTASFLDH
BO15447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5118-PA | 524 | CG5118-PA | 1..524 | 1..524 | 2694 | 100 | Plus |
