Clone Sequence Records
BO15449.3prime Sequence
689 bp (688 high quality bases) assembled on 2006-05-29
> BO15449.3prime
ATGGTCTAGAAAGCTTGCCGCCGCTCGCTGTCCGGCGGTCAGTCGCTGAG
CGCCCACAGTGGGCGGGGCCGGGCGGACGGGCGGCTGTCGCTGATGGCGC
AACTCACGACGCTTCTCACGCAGAATGTGCTTGGTCTGGGAGGTGTCCAG
CTCCTCCCAGCCGCCGGCATTATCATCCACCCAGTCCTCGAGATCGGCAT
TTACGCTAATTGGCACCAAGTCCTGGGCCTGCAGTCTTGAAAAGTCACTT
TGTTGGCTGGTCGCCGCACTCGTGGATGGATCCTCCAGGTAGAACTTCAT
CTGCGGCTTGATGGTGGGCGTCAGCTCACTGAAGAAGTCCGGTTCGGGTT
CCTCCTTGGGCGGAGTGGGTGGCTGGGCCATTCGCTGGCGGTACTGCTCG
ATGTGCTCCTCCACGGTGCGCGGACTGTCGTCCCAGGAGTTCCAGTCCCG
CTCGCGCGCCCCCGCTGTCCTGCCACCGCCGGCCTGGCCAGCGGAGGTGG
CGCCGGTGGCGGAGAAGTCGCCTCGCTCCACGATCACGTTGACCGCTTGC
AGTTGGTCGGCGGATCCGGTGGCGGAGCCGCTGTGGCTGAGCTTGCGGCG
CCTGGAGAAGCAGCACAAGGCACGCCGGCACAGCGTGATGATGCCCAGCA
CCAGCATCTTGATTTGCTGCAGCATGTCGACTGATAACT
BO15449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-PA | 660 | CG32536-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 887 | CG32536-RA | 75..731 | 675..19 | 3285 | 100 | Minus |
CG32537-RA | 2442 | CG32537-RA | 323..631 | 327..19 | 1545 | 100 | Minus |
CG32537-RA | 2442 | CG32537-RA | 1..64 | 390..327 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19276476..19276824 | 327..675 | 1745 | 100 | Plus |
X | 23542271 | X | 19275160..19275339 | 19..198 | 900 | 100 | Plus |
X | 23542271 | X | 19275399..19275528 | 198..327 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:23:21 has no hits.
BO15449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:13 Download gff for
BO15449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:24 Download gff for
BO15449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 18..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:48 Download gff for
BO15449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 59..736 | 11..689 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:37 Download gff for
BO15449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 59..736 | 11..689 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:37 Download gff for
BO15449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19275155..19275339 | 11..198 | 97 | <- | Plus |
X | 19275400..19275528 | 199..327 | 100 | <- | Plus |
X | 19276477..19276840 | 328..689 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:48 Download gff for
BO15449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19169188..19169372 | 11..198 | 97 | <- | Plus |
arm_X | 19169433..19169561 | 199..327 | 100 | <- | Plus |
arm_X | 19170510..19170873 | 328..689 | 98 | | Plus |
BO15449.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-05-29
> BO15449.5prime
GAAGTTATCAGTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCA
TCATCACGCTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAG
CTCAGCCACAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGT
CAACGTGATCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCG
CTGGCCAGGCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGG
AACTCCTGGGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTA
CCGCCAGCGAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAAC
CGGACTTCTTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTC
TACCTGGAGGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTT
TTCAAGACTGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATC
TCGAGGACTGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACC
TCCCAGACCAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCA
GCGACAGCCGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGAC
TGACCGCCGGACAGCGAGCGGCGGCAAGCTTTCTAGACC
BO15449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-PA | 660 | CG32536-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 887 | CG32536-RA | 75..731 | 17..673 | 3285 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 323..631 | 365..673 | 1545 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 1..64 | 302..365 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19276476..19276824 | 365..17 | 1745 | 100 | Minus |
X | 23542271 | X | 19275160..19275339 | 673..494 | 900 | 100 | Minus |
X | 23542271 | X | 19275399..19275528 | 494..365 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:13:44 has no hits.
BO15449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:14 Download gff for
BO15449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:25 Download gff for
BO15449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-PA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:14 Download gff for
BO15449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 59..736 | 3..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:14 Download gff for
BO15449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 59..736 | 3..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:14 Download gff for
BO15449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19275155..19275339 | 494..681 | 97 | <- | Minus |
X | 19275400..19275528 | 365..493 | 100 | <- | Minus |
X | 19276477..19276840 | 3..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:14 Download gff for
BO15449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19169188..19169372 | 494..681 | 97 | <- | Minus |
arm_X | 19169433..19169561 | 365..493 | 100 | <- | Minus |
arm_X | 19170510..19170873 | 3..364 | 98 | | Minus |
BO15449.complete Sequence
691 bp (691 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633472
> BO15449.complete
GAAGTTATCAGTCGACATGCTGCAGCAAATCAAGATGCTGGTGCTGGGCA
TCATCACGCTGTGCCGGCGTGCCTTGTGCTGCTTCTCCAGGCGCCGCAAG
CTCAGCCACAGCGGCTCCGCCACCGGATCCGCCGACCAACTGCAAGCGGT
CAACGTGATCGTGGAGCGAGGCGACTTCTCCGCCACCGGCGCCACCTCCG
CTGGCCAGGCCGGCGGTGGCAGGACAGCGGGGGCGCGCGAGCGGGACTGG
AACTCCTGGGACGACAGTCCGCGCACCGTGGAGGAGCACATCGAGCAGTA
CCGCCAGCGAATGGCCCAGCCACCCACTCCGCCCAAGGAGGAACCCGAAC
CGGACTTCTTCAGTGAGCTGACGCCCACCATCAAGCCGCAGATGAAGTTC
TACCTGGAGGATCCATCCACGAGTGCGGCGACCAGCCAACAAAGTGACTT
TTCAAGACTGCAGGCCCAGGACTTGGTGCCAATTAGCGTAAATGCCGATC
TCGAGGACTGGGTGGATGATAATGCCGGCGGCTGGGAGGAGCTGGACACC
TCCCAGACCAAGCACATTCTGCGTGAGAAGCGTCGTGAGTTGCGCCATCA
GCGACAGCCGCCCGTCCGCCCGGCCCCGCCCACTGTGGGCGCTCAGCGAC
TGACCGCCGGACAGCGAGCGGCGGCAAGCTTTCTAGACCAT
BO15449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 660 | CG32536-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-RA | 887 | CG32536-RA | 75..731 | 17..673 | 3285 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 323..631 | 365..673 | 1545 | 100 | Plus |
CG32537-RA | 2442 | CG32537-RA | 1..64 | 302..365 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19276476..19276824 | 365..17 | 1745 | 100 | Minus |
X | 23542271 | X | 19275160..19275339 | 673..494 | 900 | 100 | Minus |
X | 23542271 | X | 19275399..19275528 | 494..365 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:15 has no hits.
BO15449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:51 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 1..660 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:54 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 33..710 | 3..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:43 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 75..731 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:52 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 33..710 | 3..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:53 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32536-RA | 75..731 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:53 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19275158..19275339 | 494..675 | 98 | <- | Minus |
X | 19275400..19275528 | 365..493 | 100 | <- | Minus |
X | 19276477..19276824 | 17..364 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:43 Download gff for
BO15449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19169191..19169372 | 494..675 | 98 | <- | Minus |
arm_X | 19169433..19169561 | 365..493 | 100 | <- | Minus |
arm_X | 19170510..19170857 | 17..364 | 100 | | Minus |
BO15449.pep Sequence
Translation from 16 to 691
> BO15449.pep
MLQQIKMLVLGIITLCRRALCCFSRRRKLSHSGSATGSADQLQAVNVIVE
RGDFSATGATSAGQAGGGRTAGARERDWNSWDDSPRTVEEHIEQYRQRMA
QPPTPPKEEPEPDFFSELTPTIKPQMKFYLEDPSTSAATSQQSDFSRLQA
QDLVPISVNADLEDWVDDNAGGWEELDTSQTKHILREKRRELRHQRQPPV
RPAPPTVGAQRLTAGQRAAASFLDH
BO15449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32536-PA | 219 | CG32536-PA | 1..219 | 1..219 | 1145 | 100 | Plus |