Clone BO15450 Report

Search the DGRC for BO15450

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptcg-RA
Protein status:BO15450.pep: Imported from assembly
Sequenced Size:2047

Clone Sequence Records

BO15450.3prime Sequence

806 bp (755 high quality bases) assembled on 2006-05-29

> BO15450.3prime
ATGGTCTAGAAAGCTTGCGCATACCTGTTGCTGCGATATGGCTGGCTTCG
TCTCCAGATGCTGGCGCTGGTGCAGCATCAGGTGGTTCTTCTGGAAGAAG
GCCTTGCCGCACTCGCACACGTGTGTGCGCACCGTGCAGCCGCCGTTCGG
GTGACGCCGATTGTGCTGCATGAGACCGTGCTTGGCGGCGAATCCCTTGC
CGCAGCTGGCGCAGAAATGCGACTTCGGTTTGTTGGCCGGCGCCACGGAG
ACAACATGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGTTGCTGCTGCTG
TTGGGCCACATGCTGCAGATGCTGCTGCTGACCATGCACGGGCATCGTAG
GCACAGCGGTGACCACGGCTTGTGGATGGGTCGAGTTGGCGGCCTGCACC
AGCGTGGTCTGCGACATCACCTGACCGGTGGACGATATGATCTGCACTGG
CACAGGGCTCTGGCCCACCAGATTCGGATTGGCCGTGACCACGGTGCCCG
GATTCAGACTAGCCGTGCTCAAGAAGTGACCCGGCAGCGCGGCTGTCAAG
GCACACAGATCTGTCATTAGGCTCTTGTCGCCAGTGTGAAGGCGCAAGTG
AAGTGCCAAGGCTTCTCGGCTATTAAAAGCACTGCCGCATTCGCGGCACA
CAAACTGCGGTCGTGCCACGCCATTGGCATCCGTGGTGGATACAGTCAGC
AACGTAGAGTTGCCCGGATTGCTCACCACGGTTATGGTCTGCGGATGCGT
TTGCTGTCCAGCTTGGTGATGATGGGCCTGCTGTAGCTGTTGATTTGCTA
TGATGG

BO15450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8367-PD 2016 cg-RD 1226..2013 806..19 3915 99.8 Minus
CG8367-PB 2319 cg-RB 1529..2316 806..19 3915 99.8 Minus
CG8367-PC 1890 cg-RC 1100..1887 806..19 3915 99.8 Minus
CG8367-PA 2016 cg-RA 1226..2013 806..19 3915 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2881 CG8367-RA 1803..2590 806..19 3925 99.9 Minus
cg-RC 2866 CG8367-RC 1788..2575 806..19 3925 99.9 Minus
cg-RB 3361 CG8367-RB 2283..3070 806..19 3925 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14179312..14179937 644..19 3115 99.8 Minus
2R 25286936 2R 14179109..14179254 789..644 730 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:41:46 has no hits.

BO15450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:48:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:27 Download gff for BO15450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8367-PA 1226..2016 18..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:09 Download gff for BO15450.3prime
Subject Subject Range Query Range Percent Splice Strand
cg-RB 2283..3070 19..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:43 Download gff for BO15450.3prime
Subject Subject Range Query Range Percent Splice Strand
cg-RB 2283..3070 19..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:43 Download gff for BO15450.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14179022..14179041 787..806 100 -> Minus
2R 14179112..14179254 644..786 100 -> Minus
2R 14179313..14179937 19..643 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:09 Download gff for BO15450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10066527..10066546 787..806 100 -> Minus
arm_2R 10066617..10066759 644..786 100 -> Minus
arm_2R 10066818..10067442 19..643 99   Minus

BO15450.5prime Sequence

865 bp (788 high quality bases) assembled on 2006-05-29

> BO15450.5prime
GAAGTTATCAGTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAG

BO15450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8367-PD 2016 cg-RD 1..849 17..865 4245 100 Plus
CG8367-PA 2016 cg-RA 1..849 17..865 4245 100 Plus
CG8367-PC 1890 cg-RC 1..723 143..865 3615 100 Plus
CG8367-PB 2319 cg-RB 647..1152 360..865 2530 100 Plus
CG8367-PB 2319 cg-RB 1..343 17..359 1715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2881 CG8367-RA 578..1426 17..865 4245 100 Plus
cg-RD 3058 CG8367-RD 755..1603 17..865 4245 100 Plus
cg-RC 2866 CG8367-RC 578..1411 32..865 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14178267..14178513 619..865 1235 100 Plus
2R 25286936 2R 14177861..14178021 360..520 805 100 Plus
2R 25286936 2R 14176405..14176542 142..279 690 100 Plus
2R 25286936 2R 14174447..14174572 17..142 630 100 Plus
2R 25286936 2R 14178098..14178203 521..626 530 100 Plus
2R 25286936 2R 14176610..14176693 278..361 420 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:49:54 has no hits.

BO15450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:48:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:28 Download gff for BO15450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8367-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:28 Download gff for BO15450.5prime
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..1603 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:48 Download gff for BO15450.5prime
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..1603 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:48 Download gff for BO15450.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14176612..14176691 280..359 100 -> Plus
2R 14177861..14178021 360..520 100 -> Plus
2R 14178098..14178200 521..623 100 -> Plus
2R 14178272..14178513 624..865 100   Plus
2R 14174447..14174572 17..142 100 -> Plus
2R 14176406..14176542 143..279 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:28 Download gff for BO15450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10061952..10062077 17..142 100 -> Plus
arm_2R 10063911..10064047 143..279 100 -> Plus
arm_2R 10064117..10064196 280..359 100 -> Plus
arm_2R 10065366..10065526 360..520 100 -> Plus
arm_2R 10065603..10065705 521..623 100 -> Plus
arm_2R 10065777..10066018 624..865 100   Plus

BO15450.complete Sequence

2047 bp assembled on 2008-08-14

GenBank Submission: FJ633473

> BO15450.complete
GAAGTTATCAGTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGA
ATGTGGTGAGAGCTTTGCGCAGGAAAACCACCTGATTATGCACTCTCGCT
TCCACGGTTCATTGAATCCATTTGTTTGCGCCGAATGCGGAGCTTCGTTT
CCACGCAAGTTTCAATTGGTTAACCACGGACGTATTCACGGCAAGATTCC
CCATTCGTGCACCGTATGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAG
TTTCCCACATGAGGCGGGTGCATACCGGCGAGCAGGCGCATCCCTGCGTC
AGCTGTGGCGAGGGATTCCTCACCAAGGCCGAACTGCATCAGCATGTGAG
GACGGCGCACAATGGCGTCAATCCCAACACGAGCAGTGCCACCATCATAG
CAAATCAACAGCTACAGCAGGCCCATCATCACCAAGCTGGACAGCAAACG
CATCCGCAGACCATAACCGTGGTGAGCAATCCGGGCAACTCTACGTTGCT
GACTGTATCCACCACGGATGCCAATGGCGTGGCACGACCGCAGTTTGTGT
GCCGCGAATGCGGCAGTGCTTTTAATAGCCGAGAAGCCTTGGCACTTCAC
TTGCGCCTTCACACTGGCGACAAGAGCCTAATGACAGATCTGTGTGCCTT
GACAGCCGCGCTGCCGGGTCACTTCTTGAGCACGGCTAGTCTGAATCCGG
GCACCGTGGTCACGGCCAATCCGAATCTGGTGGGCCAGAGCCCTGTGCCA
GTGCAGATCATATCGTCCACCGGTCAGGTGATGTCGCAGACCACGCTGGT
GCAGGCCGCCAACTCGACCCATCCACAAGCCGTGGTCACCGCTGTGCCTA
CGATGCCCGTGCATGGTCAGCAGCAGCATCTGCAGCATGTGGCCCAACAG
CAGCAGCAACAGCAACAACAGCAGCAACAGCAGCAGCAACATGTTGTCTC
CGTGGCGCCGGCCAACAAACCGAAGTCGCATTTCTGCGCCAGCTGCGGCA
AGGGATTCGCCGCCAAGCACGGTCTCATGCAGCACAATCGGCGTCACCCG
AACGGCGGCTGCACGGTGCGCACACACGTGTGCGAGTGCGGCAAGGCCTT
CTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGA
AGCCAGCCATATCGCAGCAACAGGTATGCGCAAGCTTTCTAGACCAT

BO15450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2016 CG8367-PA 1..2013 17..2029 10050 100 Plus
cg-RD 2016 CG8367-PD 1..2013 17..2029 10050 100 Plus
cg-RN 2061 CG8367-PN 1..2034 17..2023 9645 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
cg-RA 2881 CG8367-RA 578..2590 17..2029 10050 100 Plus
cg-RD 3058 CG8367-RD 755..2767 17..2029 10050 100 Plus
cg-RC 2866 CG8367-RC 578..2575 32..2029 9975 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14179312..14179937 1404..2029 3115 99.8 Plus
2R 25286936 2R 14178267..14178596 619..948 1650 100 Plus
2R 25286936 2R 14178664..14178830 948..1114 835 100 Plus
2R 25286936 2R 14177861..14178021 360..520 805 100 Plus
2R 25286936 2R 14178892..14179041 1112..1261 750 100 Plus
2R 25286936 2R 14179109..14179254 1259..1404 730 100 Plus
2R 25286936 2R 14176405..14176542 142..279 690 100 Plus
2R 25286936 2R 14174447..14174572 17..142 630 100 Plus
2R 25286936 2R 14178098..14178203 521..626 530 100 Plus
2R 25286936 2R 14176610..14176693 278..361 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:04:26 has no hits.

BO15450.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:31 Download gff for BO15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RA 593..2605 17..2029 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:44 Download gff for BO15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..2767 17..2031 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:17 Download gff for BO15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RA 593..2605 17..2031 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:57 Download gff for BO15450.complete
Subject Subject Range Query Range Percent Splice Strand
cg-RD 755..2767 17..2031 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:57 Download gff for BO15450.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14178894..14179041 1114..1261 100 -> Plus
2R 14179112..14179254 1262..1404 100 -> Plus
2R 14174447..14174572 17..142 100 -> Plus
2R 14176406..14176542 143..279 100 -> Plus
2R 14176612..14176691 280..359 100 -> Plus
2R 14177861..14178021 360..520 100 -> Plus
2R 14178098..14178200 521..623 100 -> Plus
2R 14178272..14178596 624..948 100 -> Plus
2R 14178665..14178829 949..1113 100 -> Plus
2R 14179313..14179937 1405..2031 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:44 Download gff for BO15450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10066170..10066334 949..1113 100 -> Plus
arm_2R 10065603..10065705 521..623 100 -> Plus
arm_2R 10065777..10066101 624..948 100 -> Plus
arm_2R 10066399..10066546 1114..1261 100 -> Plus
arm_2R 10066617..10066759 1262..1404 100 -> Plus
arm_2R 10061952..10062077 17..142 100 -> Plus
arm_2R 10063911..10064047 143..279 100 -> Plus
arm_2R 10064117..10064196 280..359 100 -> Plus
arm_2R 10065366..10065526 360..520 100 -> Plus
arm_2R 10066818..10067442 1405..2031 99   Plus

BO15450.pep Sequence

Translation from 16 to 2047

> BO15450.pep
MCAAQNPPPFGYTWGFADNGNRAAESVLEISPNINYTVSGESMPYLLSTD
GSLAVQKDVKGLTAGGKNNVVRRMFVVNDPSFPPGTQRVITAGGASTVVK
KQDNNQQVLSLDKNCDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPG
TLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARV
HTGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHL
LTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESF
AQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTV
CGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNG
VNPNTSSATIIANQQLQQAHHHQAGQQTHPQTITVVSNPGNSTLLTVSTT
DANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALP
GHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANS
THPQAVVTAVPTMPVHGQQQHLQHVAQQQQQQQQQQQQQQQHVVSVAPAN
KPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNH
LMLHQRQHLETKPAISQQQVCASFLDH

BO15450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
cg-PA 671 CG8367-PA 1..671 1..671 3613 100 Plus
cg-PD 671 CG8367-PD 1..671 1..671 3613 100 Plus
cg-PN 686 CG8367-PN 1..679 1..670 3559 98.5 Plus
cg-PK 665 CG8367-PK 1..665 1..671 3521 98.4 Plus
cg-PC 629 CG8367-PC 1..629 43..671 3383 100 Plus