Clone Sequence Records
BO15450.3prime Sequence
806 bp (755 high quality bases) assembled on 2006-05-29
> BO15450.3prime
ATGGTCTAGAAAGCTTGCGCATACCTGTTGCTGCGATATGGCTGGCTTCG
TCTCCAGATGCTGGCGCTGGTGCAGCATCAGGTGGTTCTTCTGGAAGAAG
GCCTTGCCGCACTCGCACACGTGTGTGCGCACCGTGCAGCCGCCGTTCGG
GTGACGCCGATTGTGCTGCATGAGACCGTGCTTGGCGGCGAATCCCTTGC
CGCAGCTGGCGCAGAAATGCGACTTCGGTTTGTTGGCCGGCGCCACGGAG
ACAACATGTTGCTGCTGCTGTTGCTGCTGTTGTTGCTGTTGCTGCTGCTG
TTGGGCCACATGCTGCAGATGCTGCTGCTGACCATGCACGGGCATCGTAG
GCACAGCGGTGACCACGGCTTGTGGATGGGTCGAGTTGGCGGCCTGCACC
AGCGTGGTCTGCGACATCACCTGACCGGTGGACGATATGATCTGCACTGG
CACAGGGCTCTGGCCCACCAGATTCGGATTGGCCGTGACCACGGTGCCCG
GATTCAGACTAGCCGTGCTCAAGAAGTGACCCGGCAGCGCGGCTGTCAAG
GCACACAGATCTGTCATTAGGCTCTTGTCGCCAGTGTGAAGGCGCAAGTG
AAGTGCCAAGGCTTCTCGGCTATTAAAAGCACTGCCGCATTCGCGGCACA
CAAACTGCGGTCGTGCCACGCCATTGGCATCCGTGGTGGATACAGTCAGC
AACGTAGAGTTGCCCGGATTGCTCACCACGGTTATGGTCTGCGGATGCGT
TTGCTGTCCAGCTTGGTGATGATGGGCCTGCTGTAGCTGTTGATTTGCTA
TGATGG
BO15450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8367-PD | 2016 | cg-RD | 1226..2013 | 806..19 | 3915 | 99.8 | Minus |
CG8367-PB | 2319 | cg-RB | 1529..2316 | 806..19 | 3915 | 99.8 | Minus |
CG8367-PC | 1890 | cg-RC | 1100..1887 | 806..19 | 3915 | 99.8 | Minus |
CG8367-PA | 2016 | cg-RA | 1226..2013 | 806..19 | 3915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2881 | CG8367-RA | 1803..2590 | 806..19 | 3925 | 99.9 | Minus |
cg-RC | 2866 | CG8367-RC | 1788..2575 | 806..19 | 3925 | 99.9 | Minus |
cg-RB | 3361 | CG8367-RB | 2283..3070 | 806..19 | 3925 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14179312..14179937 | 644..19 | 3115 | 99.8 | Minus |
2R | 25286936 | 2R | 14179109..14179254 | 789..644 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:41:46 has no hits.
BO15450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:48:15 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:27 Download gff for
BO15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8367-PA | 1226..2016 | 18..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:06:09 Download gff for
BO15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RB | 2283..3070 | 19..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:43 Download gff for
BO15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RB | 2283..3070 | 19..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:43 Download gff for
BO15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14179022..14179041 | 787..806 | 100 | -> | Minus |
2R | 14179112..14179254 | 644..786 | 100 | -> | Minus |
2R | 14179313..14179937 | 19..643 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:06:09 Download gff for
BO15450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10066527..10066546 | 787..806 | 100 | -> | Minus |
arm_2R | 10066617..10066759 | 644..786 | 100 | -> | Minus |
arm_2R | 10066818..10067442 | 19..643 | 99 | | Minus |
BO15450.5prime Sequence
865 bp (788 high quality bases) assembled on 2006-05-29
> BO15450.5prime
GAAGTTATCAGTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAG
BO15450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8367-PD | 2016 | cg-RD | 1..849 | 17..865 | 4245 | 100 | Plus |
CG8367-PA | 2016 | cg-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG8367-PC | 1890 | cg-RC | 1..723 | 143..865 | 3615 | 100 | Plus |
CG8367-PB | 2319 | cg-RB | 647..1152 | 360..865 | 2530 | 100 | Plus |
CG8367-PB | 2319 | cg-RB | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2881 | CG8367-RA | 578..1426 | 17..865 | 4245 | 100 | Plus |
cg-RD | 3058 | CG8367-RD | 755..1603 | 17..865 | 4245 | 100 | Plus |
cg-RC | 2866 | CG8367-RC | 578..1411 | 32..865 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14178267..14178513 | 619..865 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 14177861..14178021 | 360..520 | 805 | 100 | Plus |
2R | 25286936 | 2R | 14176405..14176542 | 142..279 | 690 | 100 | Plus |
2R | 25286936 | 2R | 14174447..14174572 | 17..142 | 630 | 100 | Plus |
2R | 25286936 | 2R | 14178098..14178203 | 521..626 | 530 | 100 | Plus |
2R | 25286936 | 2R | 14176610..14176693 | 278..361 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:49:54 has no hits.
BO15450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:48:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:28 Download gff for
BO15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8367-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:28 Download gff for
BO15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..1603 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:48 Download gff for
BO15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..1603 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:48 Download gff for
BO15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14176612..14176691 | 280..359 | 100 | -> | Plus |
2R | 14177861..14178021 | 360..520 | 100 | -> | Plus |
2R | 14178098..14178200 | 521..623 | 100 | -> | Plus |
2R | 14178272..14178513 | 624..865 | 100 | | Plus |
2R | 14174447..14174572 | 17..142 | 100 | -> | Plus |
2R | 14176406..14176542 | 143..279 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:28 Download gff for
BO15450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10061952..10062077 | 17..142 | 100 | -> | Plus |
arm_2R | 10063911..10064047 | 143..279 | 100 | -> | Plus |
arm_2R | 10064117..10064196 | 280..359 | 100 | -> | Plus |
arm_2R | 10065366..10065526 | 360..520 | 100 | -> | Plus |
arm_2R | 10065603..10065705 | 521..623 | 100 | -> | Plus |
arm_2R | 10065777..10066018 | 624..865 | 100 | | Plus |
BO15450.complete Sequence
2047 bp assembled on 2008-08-14
GenBank Submission: FJ633473
> BO15450.complete
GAAGTTATCAGTCGACATGTGTGCCGCCCAGAATCCGCCGCCCTTCGGCT
ATACCTGGGGTTTTGCGGACAACGGCAACCGCGCCGCCGAATCGGTACTG
GAGATATCGCCCAACATCAACTATACAGTCAGCGGGGAGTCGATGCCCTA
TCTACTATCGACGGATGGATCATTGGCAGTTCAAAAGGATGTCAAAGGCC
TTACAGCTGGCGGCAAAAATAATGTCGTTCGTCGTATGTTCGTCGTAAAC
GATCCTTCATTTCCGCCTGGAACACAAAGAGTTATCACTGCCGGCGGAGC
ATCGACGGTGGTCAAGAAGCAGGACAACAATCAGCAGGTCCTGAGCCTCG
ACAAGAACTGTGACATACTTCCTGGTATTTCAGTTCAAGTGCAGAAAGTC
ATACAAGGACTGGAGGATAACGAGGACTCGCAAGGCGAAGCACCCAACCT
AAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCGAAGACCGAACTACAGG
AATCAATGCATTTCAGCGAAACGGACGCCACCATCAAGAAGGAACGCCCG
TACAGTTGCGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCACCATTTGAC
AACCCACGCACGCGTGCACACAGGTGAACGCCCCCACATCTGCACCCATT
GCGGCAAGAGCTTCGCGCACAAGCACTGTCTCAACACTCACCTGCTGCTT
CACTCCACGGAGAGACCTTATCAGTGCCAGGAGTGCAAGAAGAGCTTCAC
CCTCAAGCACCATCTGCTGACCCATTCGCGGGTCCATAGCCGGGAGCGAC
CATTCGTCTGCCAGGAGTGTGGACGCGCATTTCCGCTTAAGCGACACCTG
GTCACGCACAGCAAGTTCCACGCCGGCGAACGACCATATGTATGCGAGGA
ATGTGGTGAGAGCTTTGCGCAGGAAAACCACCTGATTATGCACTCTCGCT
TCCACGGTTCATTGAATCCATTTGTTTGCGCCGAATGCGGAGCTTCGTTT
CCACGCAAGTTTCAATTGGTTAACCACGGACGTATTCACGGCAAGATTCC
CCATTCGTGCACCGTATGCGGCAAAGAGTTTCTACAAAAGCGAACGCTAG
TTTCCCACATGAGGCGGGTGCATACCGGCGAGCAGGCGCATCCCTGCGTC
AGCTGTGGCGAGGGATTCCTCACCAAGGCCGAACTGCATCAGCATGTGAG
GACGGCGCACAATGGCGTCAATCCCAACACGAGCAGTGCCACCATCATAG
CAAATCAACAGCTACAGCAGGCCCATCATCACCAAGCTGGACAGCAAACG
CATCCGCAGACCATAACCGTGGTGAGCAATCCGGGCAACTCTACGTTGCT
GACTGTATCCACCACGGATGCCAATGGCGTGGCACGACCGCAGTTTGTGT
GCCGCGAATGCGGCAGTGCTTTTAATAGCCGAGAAGCCTTGGCACTTCAC
TTGCGCCTTCACACTGGCGACAAGAGCCTAATGACAGATCTGTGTGCCTT
GACAGCCGCGCTGCCGGGTCACTTCTTGAGCACGGCTAGTCTGAATCCGG
GCACCGTGGTCACGGCCAATCCGAATCTGGTGGGCCAGAGCCCTGTGCCA
GTGCAGATCATATCGTCCACCGGTCAGGTGATGTCGCAGACCACGCTGGT
GCAGGCCGCCAACTCGACCCATCCACAAGCCGTGGTCACCGCTGTGCCTA
CGATGCCCGTGCATGGTCAGCAGCAGCATCTGCAGCATGTGGCCCAACAG
CAGCAGCAACAGCAACAACAGCAGCAACAGCAGCAGCAACATGTTGTCTC
CGTGGCGCCGGCCAACAAACCGAAGTCGCATTTCTGCGCCAGCTGCGGCA
AGGGATTCGCCGCCAAGCACGGTCTCATGCAGCACAATCGGCGTCACCCG
AACGGCGGCTGCACGGTGCGCACACACGTGTGCGAGTGCGGCAAGGCCTT
CTTCCAGAAGAACCACCTGATGCTGCACCAGCGCCAGCATCTGGAGACGA
AGCCAGCCATATCGCAGCAACAGGTATGCGCAAGCTTTCTAGACCAT
BO15450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2016 | CG8367-PA | 1..2013 | 17..2029 | 10050 | 100 | Plus |
cg-RD | 2016 | CG8367-PD | 1..2013 | 17..2029 | 10050 | 100 | Plus |
cg-RN | 2061 | CG8367-PN | 1..2034 | 17..2023 | 9645 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-RA | 2881 | CG8367-RA | 578..2590 | 17..2029 | 10050 | 100 | Plus |
cg-RD | 3058 | CG8367-RD | 755..2767 | 17..2029 | 10050 | 100 | Plus |
cg-RC | 2866 | CG8367-RC | 578..2575 | 32..2029 | 9975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14179312..14179937 | 1404..2029 | 3115 | 99.8 | Plus |
2R | 25286936 | 2R | 14178267..14178596 | 619..948 | 1650 | 100 | Plus |
2R | 25286936 | 2R | 14178664..14178830 | 948..1114 | 835 | 100 | Plus |
2R | 25286936 | 2R | 14177861..14178021 | 360..520 | 805 | 100 | Plus |
2R | 25286936 | 2R | 14178892..14179041 | 1112..1261 | 750 | 100 | Plus |
2R | 25286936 | 2R | 14179109..14179254 | 1259..1404 | 730 | 100 | Plus |
2R | 25286936 | 2R | 14176405..14176542 | 142..279 | 690 | 100 | Plus |
2R | 25286936 | 2R | 14174447..14174572 | 17..142 | 630 | 100 | Plus |
2R | 25286936 | 2R | 14178098..14178203 | 521..626 | 530 | 100 | Plus |
2R | 25286936 | 2R | 14176610..14176693 | 278..361 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:04:26 has no hits.
BO15450.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:31 Download gff for
BO15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RA | 593..2605 | 17..2029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:44 Download gff for
BO15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..2767 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:17 Download gff for
BO15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RA | 593..2605 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:57 Download gff for
BO15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cg-RD | 755..2767 | 17..2031 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:57 Download gff for
BO15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14178894..14179041 | 1114..1261 | 100 | -> | Plus |
2R | 14179112..14179254 | 1262..1404 | 100 | -> | Plus |
2R | 14174447..14174572 | 17..142 | 100 | -> | Plus |
2R | 14176406..14176542 | 143..279 | 100 | -> | Plus |
2R | 14176612..14176691 | 280..359 | 100 | -> | Plus |
2R | 14177861..14178021 | 360..520 | 100 | -> | Plus |
2R | 14178098..14178200 | 521..623 | 100 | -> | Plus |
2R | 14178272..14178596 | 624..948 | 100 | -> | Plus |
2R | 14178665..14178829 | 949..1113 | 100 | -> | Plus |
2R | 14179313..14179937 | 1405..2031 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:44 Download gff for
BO15450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10066170..10066334 | 949..1113 | 100 | -> | Plus |
arm_2R | 10065603..10065705 | 521..623 | 100 | -> | Plus |
arm_2R | 10065777..10066101 | 624..948 | 100 | -> | Plus |
arm_2R | 10066399..10066546 | 1114..1261 | 100 | -> | Plus |
arm_2R | 10066617..10066759 | 1262..1404 | 100 | -> | Plus |
arm_2R | 10061952..10062077 | 17..142 | 100 | -> | Plus |
arm_2R | 10063911..10064047 | 143..279 | 100 | -> | Plus |
arm_2R | 10064117..10064196 | 280..359 | 100 | -> | Plus |
arm_2R | 10065366..10065526 | 360..520 | 100 | -> | Plus |
arm_2R | 10066818..10067442 | 1405..2031 | 99 | | Plus |
BO15450.pep Sequence
Translation from 16 to 2047
> BO15450.pep
MCAAQNPPPFGYTWGFADNGNRAAESVLEISPNINYTVSGESMPYLLSTD
GSLAVQKDVKGLTAGGKNNVVRRMFVVNDPSFPPGTQRVITAGGASTVVK
KQDNNQQVLSLDKNCDILPGISVQVQKVIQGLEDNEDSQGEAPNLKLEPG
TLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARV
HTGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQECKKSFTLKHHL
LTHSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESF
AQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTV
CGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRTAHNG
VNPNTSSATIIANQQLQQAHHHQAGQQTHPQTITVVSNPGNSTLLTVSTT
DANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALP
GHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANS
THPQAVVTAVPTMPVHGQQQHLQHVAQQQQQQQQQQQQQQQHVVSVAPAN
KPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNH
LMLHQRQHLETKPAISQQQVCASFLDH
BO15450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cg-PA | 671 | CG8367-PA | 1..671 | 1..671 | 3613 | 100 | Plus |
cg-PD | 671 | CG8367-PD | 1..671 | 1..671 | 3613 | 100 | Plus |
cg-PN | 686 | CG8367-PN | 1..679 | 1..670 | 3559 | 98.5 | Plus |
cg-PK | 665 | CG8367-PK | 1..665 | 1..671 | 3521 | 98.4 | Plus |
cg-PC | 629 | CG8367-PC | 1..629 | 43..671 | 3383 | 100 | Plus |