Clone Sequence Records
BO15451.3prime Sequence
828 bp (779 high quality bases) assembled on 2006-05-29
> BO15451.3prime
ATGGTCTAGAAAGCTTGCCGTGCTGATGCGCCGCTGCTGCTCCTCGCTCT
TGATGATGCTATCGAGAACGTTCTCCAGATTTTGCGTGGCCGCCGACAGT
TCGGCATTATCGCTGTACGAGTCCTCGACGATCTCCTTGACCTTGTGCAG
CAGCAGCTTAAAGTTCACCATCTCGGTGTCGCGGCCATCTCCGCCGTTTG
CCGGCTGCTGTTCCAGTAGAGCACCCAGCGGCATGGGCAGCGGCAGAGGA
GCCGGCAGGGAACCAGGTCCTTGTCCTGGCTGGACACTCGAGCGACGCTG
GTCGAACCACAAGCTTATGTCGTTGAGCGAGTAATCCGATTTGTTTGCCT
CCAGATAGCTGCGATTCAAGTCGGCGCCATTTATGGAGTGCGTGAGATTG
GCACCCACGGGCGCATACATGTCGAATAGCATCTGTCGCTGAGGCGTGCT
GGAGCTAAGGAACGTGGAGCTGACTAGGGGCGCAGCTGAAGGCGCCACTT
GGGCAGCTGGCGCAGGTGGCGGCGAAGTTACCGCTGAGGCATGTGATAGC
TGTCGCATATCCTCGATAATCTGCAGCAGAAAGCACTGATGGGCGCTCAG
AAACTGCGATATTTCCGAACTAGATGCGGTGGCCACTGTTTGCAGCTGGG
TTTCCAGCTTCGCATTTTGCAAAAGCAATCGATCGATGATGGACTGCAGC
CTGCTGGACGCCTCGCTGGCTAGACCCGTCAGGGAGCAGAGCTCCTGCTG
CTGTTGCTGCAGGACCACTGTGCGGTCCTTCTCCTGGCACTGACTGCGCA
CACTGCGCGTCTCTGCGGGAATGGGCGT
BO15451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6157-PA | 1950 | dah-RA | 1138..1947 | 828..19 | 4025 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dah-RB | 2344 | CG6157-RB | 1231..2040 | 828..19 | 4035 | 99.9 | Minus |
dah-RA | 2353 | CG6157-RA | 1240..2049 | 828..19 | 4035 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15330334..15330698 | 383..19 | 1825 | 100 | Minus |
X | 23542271 | X | 15329701..15329868 | 828..661 | 825 | 99.4 | Minus |
X | 23542271 | X | 15330112..15330271 | 543..384 | 800 | 100 | Minus |
X | 23542271 | X | 15329932..15330049 | 661..544 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:38:09 has no hits.
BO15451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:17 Download gff for
BO15451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-PA | 1138..1950 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:29 Download gff for
BO15451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6157-PA | 1138..1950 | 16..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:00:30 Download gff for
BO15451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 1240..2049 | 19..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:13:29 Download gff for
BO15451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 1240..2049 | 19..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:13:29 Download gff for
BO15451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15329701..15329867 | 662..828 | 99 | -> | Minus |
X | 15329932..15330049 | 544..661 | 100 | -> | Minus |
X | 15330112..15330271 | 384..543 | 100 | -> | Minus |
X | 15330334..15330698 | 19..383 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:00:30 Download gff for
BO15451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15223734..15223900 | 662..828 | 99 | -> | Minus |
arm_X | 15223965..15224082 | 544..661 | 100 | -> | Minus |
arm_X | 15224145..15224304 | 384..543 | 100 | -> | Minus |
arm_X | 15224367..15224731 | 19..383 | 100 | | Minus |
BO15451.5prime Sequence
896 bp (839 high quality bases) assembled on 2006-05-29
> BO15451.5prime
GAAGTTATCAGTCGACATGCTGAGATCGTCGGTGCCCGTGCAGCTGACAA
AACTGCGAAATAGCGCCGAGGCCGTGGCGTCCATTGCCCGCGAAAAGGGA
TCCCAAGGTGGCCAAGGACAAAAGCAACAGGTGGACAAAGAGCTATCCAC
CATCATGGATGACTTGCAGCGGGATTACGGGAATTACAAGTACACGGTAT
ACCGGTGCGCCAGTAAATTTGTGGCGCTGCAAAAGATATTTCACACTGGA
AAAATCCCCTACAAGCTGGTTTTGGCCATTTTGGATCGCCATAACTTGAG
TGGTGGCCTGGAACTGATGGTTCCTCCATTCCAGTTGACCTCCCTGCTGC
ACGATGTATACTTTGCCTGCGAGAAACTAGGCCATTTCAACCAGGATGCG
AACTATAAACTGGACAGGGCAACCGGGCTGTTGGCCAACTTCTTCTGGAA
TGTCTACGATCCGCAACGCAGACACTCCATATCCCTGTTAGAGATCAGGA
TCACCTTCATACTGCTGTGCAAGCTATATAGCAGCGATCACCTGGTGGGC
GACATCTTTGGCCTGCTGGCCGATCCCAAGTCGCAGATCATCTCCAGATA
TGCATTCGAACAGCTCCTAGCCACGCTGAGCAAGTTACTCAGCTATTTGG
GCGAGGCCAAGGCCTATGGCGTCCACAATCTTCCGTTGGCTATGGAGCAG
TGCTTTGCCCGCTGTCCGCATGGCGTTGGTGGACTGACCGAGCCGCAGTT
CCACAAACTCTGGACGGGAGCGGGTGTCCAGACGAGATTCCTGATCTATG
GCAATCTGCTGGCACTGGTGAAACGCATCGAGGACACCGAGCATTTGATT
CACAGTAATTCTTGTGCCGGCTGGCCGCAGGAGCACATTGTGAGCA
BO15451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6157-PA | 1950 | dah-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dah-RA | 2353 | CG6157-RA | 103..982 | 17..896 | 4340 | 99.7 | Plus |
dah-RB | 2344 | CG6157-RB | 103..973 | 17..896 | 4195 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15329010..15329443 | 463..896 | 2095 | 98.8 | Plus |
X | 23542271 | X | 15328444..15328672 | 17..245 | 1145 | 100 | Plus |
X | 23542271 | X | 15328736..15328953 | 246..463 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:15:42 has no hits.
BO15451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:18 Download gff for
BO15451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:31 Download gff for
BO15451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6157-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:17 Download gff for
BO15451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 103..981 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:51 Download gff for
BO15451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 103..981 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:51 Download gff for
BO15451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15328736..15328952 | 246..462 | 100 | -> | Plus |
X | 15328444..15328672 | 17..245 | 100 | -> | Plus |
X | 15329010..15329442 | 463..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:17 Download gff for
BO15451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15222477..15222705 | 17..245 | 100 | -> | Plus |
arm_X | 15222769..15222985 | 246..462 | 100 | -> | Plus |
arm_X | 15223043..15223475 | 463..895 | 99 | | Plus |
BO15451.complete Sequence
1981 bp assembled on 2006-10-11
GenBank Submission: FJ633474
> BO15451.complete
GAAGTTATCAGTCGACATGCTGAGATCGTCGGTGCCCGTGCAGCTGACAA
AACTGCGAAATAGCGCCGAGGCCGTGGCGTCCATTGCCCGCGAAAAGGGA
TCCCAAGGTGGCCAAGGACAAAAGCAACAGGTGGACAAAGAGCTATCCAC
CATCATGGATGACTTGCAGCGGGATTACGGGAATTACAAGTACACGGTAT
ACCGGTGCGCCAGTAAATTTGTGGCGCTGCAAAAGATATTTCACACTGGA
AAAATCCCCTACAAGCTGGTTTTGGCCATTTTGGATCGCCATAACTTGAG
TGGTGGCCTGGAACTGATGGTTCCTCCATTCCAGTTGACCTCCCTGCTGC
ACGATGTATACTTTGCCTGCGAGAAACTAGGCCATTTCAACCAGGATGCG
AACTATAAACTGGACAGGGCAACCGGGCTGTTGGCCAACTTCTTCTGGAA
TGTCTACGATCCGCAACGCAGACACTCCATATCCCTGTTAGAGATCAGGA
TCACCTTCATACTGCTGTGCAAGCTATATAGCAGCGATCACCTGGTGGGC
GACATCTTTGGCCTGCTGGCCGATCCCAAGTCGCAGATCATCTCCAGATA
TGCATTCGAACAGCTCCTAGCCACGCTGAGCAAGTTACTCAGCTATTTGG
GCGAGGCCAAGGCCTATGGCGTCCACAATCTTCCGTTGGCTATGGAGCAG
TGCTTTGCCCGCTGTCCGCATGGCGTTGGTGGACTGACCGAGCCGCAGTT
CCACAAACTCTGGACGGGAGCGGGTGTCCAGACGAGATTCCTGATCTATG
GCAATCTGCTGGCACTGGTGAAACGCATCGAGGACACCGAGCATTTGATT
CACAGTAATTCTTGTGCCGGCTGCCGCAAGGAGCACATTGTGGGCATACG
TTTCCGGTGTCAGGTGTGTAGGGATATATCGTTGTGCCTGCCCTGCTTTG
CAGTGGGCTTCGCTGGTGGTCGCCACGAGCCGGGTCATCGGATGTGCGAG
GTCTTCGTGGAGGATCAGCCGCCATTGCGTTGGACCCGCCACCTGGCCAG
GCTGTGCGGCTGGCTGGTGATGCCGCGCAAAACACAGGAGGAGGAGCGTC
GCGGCTTCTGTAATGCGCAGGAGAGTGGGCCCGCCTTGGGTCAATCCGCT
GCCACGCCCATTCCCGCAGAGACGCGCAGTGTGCGCAGTCAGTGCCAGGA
GAAGGACCGCACAGTTGTCCTGCAGCAACAGCAGCAGGAGCTCTGCTCCC
TGACGGGTCTAGCCAGCGAGGCGTCCAGCAGGCTGCAGTCCATCATCGAT
CGATTGCTTTTGCAAAATGCGAAGCTGGAAACCCAGCTGCAAACAGTGGC
CACCGCATCTAGTTCGGAAATATCGCAGTTTCTGAGCGCCCATCAGTGCT
TTCTGCTGCAGATTATCGAGGATATGCGACAGCTATCACATGCCTCAGCG
GTAACTTCGCCGCCACCTGCGCCAGCTGCCCAAGTGGCGCCTTCAGCTGC
GCCCCTAGTCAGCTCCACGTTCCTTAGCTCCAGCACGCCTCAGCGACAGA
TGCTATTCGACATGTATGCGCCCGTGGGTGCCAATCTCACGCACTCCATA
AATGGCGCCGACTTGAATCGCAGCTATCTGGAGGCAAACAAATCGGATTA
CTCGCTCAACGACATAAGCTTGTGGTTCGACCAGCGTCGCTCGAGTGTCC
AGCCAGGACAAGGACCTGGTTCCCTGCCGGCTCCTCTGCCGCTGCCCATG
CCGCTGGGTGCTCTACTGGAACAGCAGCCGGCAAACGGCGGAGATGGCCG
CGACACCGAGATGGTGAACTTTAAGCTGCTGCTGCACAAGGTCAAGGAGA
TCGTCGAGGACTCGTACAGCGATAATGCCGAACTGTCGGCGGCCACGCAA
AATCTGGAGAACGTTCTCGATAGCATCATCAAGAGCGAGGAGCAGCAGCG
GCGCATCAGCACGGCAAGCTTTCTAGACCAT
BO15451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dah-RA | 1950 | CG6157-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
dah-RB | 1941 | CG6157-PB | 1..1938 | 17..1963 | 9565 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dah-RA | 2353 | CG6157-RA | 103..2049 | 17..1963 | 9735 | 100 | Plus |
dah-RB | 2344 | CG6157-RB | 103..2040 | 17..1963 | 9565 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15329010..15329868 | 463..1321 | 4295 | 100 | Plus |
X | 23542271 | X | 15330334..15330698 | 1599..1963 | 1825 | 100 | Plus |
X | 23542271 | X | 15328444..15328672 | 17..245 | 1145 | 100 | Plus |
X | 23542271 | X | 15328736..15328953 | 246..463 | 1090 | 100 | Plus |
X | 23542271 | X | 15330112..15330271 | 1439..1598 | 800 | 100 | Plus |
X | 23542271 | X | 15329932..15330049 | 1321..1438 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:24 has no hits.
BO15451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:29 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 1..1950 | 17..1966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:12 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 99..2045 | 17..1963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:11 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 103..2049 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:30 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 99..2045 | 17..1963 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:02 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dah-RA | 103..2049 | 17..1965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:02 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15328444..15328672 | 17..245 | 100 | -> | Plus |
X | 15328736..15328952 | 246..462 | 100 | -> | Plus |
X | 15329010..15329867 | 463..1320 | 100 | -> | Plus |
X | 15329932..15330049 | 1321..1438 | 100 | -> | Plus |
X | 15330112..15330271 | 1439..1598 | 100 | -> | Plus |
X | 15330334..15330698 | 1599..1965 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:11 Download gff for
BO15451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15222477..15222705 | 17..245 | 100 | -> | Plus |
arm_X | 15222769..15222985 | 246..462 | 100 | -> | Plus |
arm_X | 15223043..15223900 | 463..1320 | 100 | -> | Plus |
arm_X | 15223965..15224082 | 1321..1438 | 100 | -> | Plus |
arm_X | 15224145..15224304 | 1439..1598 | 100 | -> | Plus |
arm_X | 15224367..15224731 | 1599..1965 | 99 | | Plus |
BO15451.pep Sequence
Translation from 16 to 1981
> BO15451.pep
MLRSSVPVQLTKLRNSAEAVASIAREKGSQGGQGQKQQVDKELSTIMDDL
QRDYGNYKYTVYRCASKFVALQKIFHTGKIPYKLVLAILDRHNLSGGLEL
MVPPFQLTSLLHDVYFACEKLGHFNQDANYKLDRATGLLANFFWNVYDPQ
RRHSISLLEIRITFILLCKLYSSDHLVGDIFGLLADPKSQIISRYAFEQL
LATLSKLLSYLGEAKAYGVHNLPLAMEQCFARCPHGVGGLTEPQFHKLWT
GAGVQTRFLIYGNLLALVKRIEDTEHLIHSNSCAGCRKEHIVGIRFRCQV
CRDISLCLPCFAVGFAGGRHEPGHRMCEVFVEDQPPLRWTRHLARLCGWL
VMPRKTQEEERRGFCNAQESGPALGQSAATPIPAETRSVRSQCQEKDRTV
VLQQQQQELCSLTGLASEASSRLQSIIDRLLLQNAKLETQLQTVATASSS
EISQFLSAHQCFLLQIIEDMRQLSHASAVTSPPPAPAAQVAPSAAPLVSS
TFLSSSTPQRQMLFDMYAPVGANLTHSINGADLNRSYLEANKSDYSLNDI
SLWFDQRRSSVQPGQGPGSLPAPLPLPMPLGALLEQQPANGGDGRDTEMV
NFKLLLHKVKEIVEDSYSDNAELSAATQNLENVLDSIIKSEEQQRRISTA
SFLDH
BO15451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dah-PA | 649 | CG6157-PA | 1..649 | 1..649 | 3357 | 100 | Plus |
dah-PB | 646 | CG6157-PB | 1..646 | 1..649 | 3328 | 99.5 | Plus |
Dys-PE | 1051 | CG34157-PE | 445..729 | 53..343 | 218 | 25.9 | Plus |
Dys-PJ | 1152 | CG34157-PJ | 445..729 | 53..343 | 218 | 25.9 | Plus |
Dys-PL | 1323 | CG34157-PL | 717..1001 | 53..343 | 218 | 25.9 | Plus |