Clone Sequence Records
BO15452.3prime Sequence
776 bp (665 high quality bases) assembled on 2006-05-30
> BO15452.3prime
ATGGTCTAGAAAGCTTGCCGCCGCGGTTTCCGTCATGGAGGCCTTCTTTA
TTACTACAGACCGCGGCTTGTTGCGCGTCACATCGATCTCGTAGAGCGCC
AGTCCTAGTTGATGGACGAAGGAGCTGAATTGCTTGTTCAGGTAGGCGAA
GCTAAACGCTGGCAGCTGCTCCGCGGAGCAAGTGCCCCGCAGATCATCGT
GCGCCCAATGAGGAGCATCCACATCGCACGGATGCCTGCCCTGAAGGTGA
GGGAACGCCTCCGTGGAGAGGTGTGGATAGAACACCTTTAGCAGTTCGAA
GTTAAGGTAGCTGGAGGCATTCGAGTGTACTAAAGCCTCGTGAAGATCTG
CACTTAGTGACGCCGGAATGGCCAAATACAGTTTGTAGCGCCGCCGACTT
GGTCCCGACTTCTTCACCTCGCAGCTCCCACTGATGAGTTTTACCTTCTG
CAGCAGGGAATCCAAGGGTAGGCCTCCGTACTCGTACATATAAAAGTCTC
TTGGACGACGATATCGCTGGTGAGTCAGGCGGTTAAAGTGCAGTACCCTC
GAACTGGGTATGTTGATCAGGTGCAAGGGCAGGCTGTATATGTGCGATGT
TATAAGATGAACGTGCGTTGCTGCCGGCTTAGTGGCAATCACATGTGAAA
TGTCCGCCGCCAAGGGATAAACGCCCGCCTGGTGGATGAAGCCAAAGAAC
AGGGTCAGCGCCACATTGCTTACGTACCAGATCTTCAGCAAATAGGGACC
AGAAGCTTTGCTCGAAAGCAGTTTGT
BO15452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3419-PB | 2091 | CG3419-RB | 1331..2088 | 776..19 | 3790 | 100 | Minus |
| CG3419-PA | 2493 | CG3419-RA | 1331..2047 | 776..60 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45069-RB | 3221 | CG45069-RB | 1424..2181 | 776..19 | 3790 | 100 | Minus |
| CG45068-RA | 3221 | CG45068-RA | 1424..2181 | 776..19 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24413351..24414108 | 776..19 | 3790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:27:40 has no hits.
BO15452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:19 Download gff for
BO15452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-PB | 1331..2091 | 18..776 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:32 Download gff for
BO15452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-PB | 1331..2091 | 18..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:48:13 Download gff for
BO15452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 1403..2167 | 11..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:01:40 Download gff for
BO15452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45068-RA | 1424..2188 | 11..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:01:40 Download gff for
BO15452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24413351..24414115 | 11..776 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:48:13 Download gff for
BO15452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20300874..20301638 | 11..776 | 99 | | Minus |
BO15452.5prime Sequence
786 bp (784 high quality bases) assembled on 2006-05-29
> BO15452.5prime
GAAGTTATCAGTCGACATGCGCTTGACAACGCTGTGGCAGAACCGCTCGC
CTGGCGACCGCCATCTGAGTACATACTTTTGCTTTGCGGCGGTGCGTCTG
CTGCTCGTCTTTGTGCCCCAACTGGGCTACGTGCATCCGGATGAGTTCTT
CCAGAGCGTGGAGGTAATGACTGGCGATCACTTTCGGCTGGAGCATACGC
GCACCTGGGAGTTCAACAACTCCCTGCCGGTGAGGTCAATCGTTCTGCCC
TTCGCTCTGCTCCGGATTCCCTGGAGCTTCTACGAGTTCGTTGCCGAGTG
CCTGAAGGCCTGGTGGCAACTGGAGCTGCTGGGCACCTACGCGTACGTGG
TGTTCCCCCGGCTGATTTACACTCTGATCTCCTTTAGCAACGACTACTGC
TTGTTCCGCATTTGCCGGTTGTACGGACTCCGATTCGAGATACGCCTCTT
GGCAATGGGCAGCTCCTGGATTCTTCTCGTCTTCGGCACGCGCACCTTCT
CCAACAGCCTGGAAATGGCCATGTGCTCCTGGCTGCTCTGCTTGGTATCG
GAATGCATGTTGCGCACGAACACGGTGGTGTACAAAAAGGAGTTTCTGGA
AGAGAAGTACGACAAGGCGGAGTCCATCAGCGAAAGGGTGCGCATTTGGA
AGCTGAAGAACTCCCTGCCCGCGCACAATCTGCAGCACCTAATGGCCATG
TCAACCATTTGCGTAGCTGGCGTGTTCAATAGACCTACATTCCTGCTCTT
TGGAGCACCGATGGTCTTCTTTTGGCTGCTGCGAGG
BO15452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3419-PA | 2493 | CG3419-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
| CG3419-PB | 2091 | CG3419-RB | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45069-RB | 3221 | CG45069-RB | 94..863 | 17..786 | 3850 | 100 | Plus |
| CG45068-RA | 3221 | CG45068-RA | 94..863 | 17..786 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24412177..24412790 | 173..786 | 3070 | 100 | Plus |
| 2R | 25286936 | 2R | 24411963..24412120 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:49:02 has no hits.
BO15452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:20 Download gff for
BO15452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-PA | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:33 Download gff for
BO15452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-PB | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:39 Download gff for
BO15452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RA | 62..842 | 5..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:02 Download gff for
BO15452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45068-RA | 83..863 | 5..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:02 Download gff for
BO15452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24411952..24412119 | 5..173 | 97 | -> | Plus |
| 2R | 24412178..24412790 | 174..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:39 Download gff for
BO15452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20299475..20299642 | 5..173 | 97 | -> | Plus |
| arm_2R | 20299701..20300313 | 174..786 | 100 | | Plus |
BO15452.complete Sequence
2122 bp assembled on 2006-10-11
GenBank Submission: FJ633475
> BO15452.complete
GAAGTTATCAGTCGACATGCGCTTGACAACGCTGTGGCAGAACCGCTCGC
CTGGCGACCGCCATCTGAGTACATACTTTTGCTTTGCGGCGGTGCGTCTG
CTGCTCGTCTTTGTGCCCCAACTGGGCTACGTGCATCCGGATGAGTTCTT
CCAGAGCGTGGAGGTAATGACTGGCGATCACTTTCGGCTGGAGCATACGC
GCACCTGGGAGTTCAACAACTCCCTGCCGGTGAGGTCAATCGTTCTGCCC
TTCGCTCTGCTCCGGATTCCCTGGAGCTTCTACGAGTTCGTTGCCGAGTG
CCTGAAGGCCTGGTGGCAACTGGAGCTGCTGGGCACCTACGCGTACGTGG
TGTTCCCCCGGCTGATTTACACTCTGATCTCCTTTAGCAACGACTACTGC
TTGTTCCGCATTTGCCGGTTGTACGGACTCCGATTCGAGATACGCCTCTT
GGCAATGGGCAGCTCCTGGATTCTTCTCGTCTTCGGCACGCGCACCTTCT
CCAACAGCCTGGAAATGGCCATGTGCTCCTGGCTGCTCTGCTTGGTATCG
GAATGCATGTTGCGCACGAACACGGTGGTGTACAAAAAGGAGTTTCTGGA
AGAGAAGTACGACAAGGCGGAGTCCATCAGCGAAAGGGTGCGCATTTGGA
AGCTGAAGAACTCCCTGCCCGCGCACAATCTGCAGCACCTAATGGCCATG
TCAACCATTTGCGTAGCTGGCGTGTTCAATAGACCTACATTCCTGCTCTT
TGGAGCACCGATGGTCTTCTTTTGGCTGCTGCGAGGCATGGGAACCAGAA
GCATCACCTTCAGGGACTTTAATCTGCGCATTGCTCTCTTCTGCTTGTGC
GCCTTGCCTGCTCTAGTACTGTTTATATTCTGCGACTCACTGTACTACCA
GCACTTGACCCTCGGAGAACTGCACATGATGCACTTGAGCATCGACAACT
TTGTCTTCACGCCCTGGAACTTCATAAAAGCCAACCTGGATTCGGCACAG
ACGGCCAGCCATGGAGTCCACCCATGCTATGTCCACCTGATGGTCAACAT
GCCAATGCTGTTCAACGTCCTTGCCTTGGCTTCGCTGGGAGCCTTCGCAC
AGTTGCTGCTCAGATTCTTCCGGGCGGAATATCAGGTGCTGCCGCGTTTC
CAAAGCATCGTGTCATTGATGTCGGGGGCCATATTTGTGCCCCTCTTCTT
TCTTTCCCTGATCAATCACCAGGAGCCGCGCTTTCTCCTGCCAGTCACAT
TTCCCCTCATTCTGCTTCATGCGCCCAAACTAATCACAGGATTTAGTGCC
AAGTATCCCTTCCAAAAGGACCACCCACTCTTGCGCTTGTTCTACGACAA
ACTGCTTTCGAGCAAAGCTTCTGGTCCCTATTTGCTGAAGATCTGGTACG
TAAGCAATGTGGCGCTGACCCTGTTCTTTGGCTTCATCCACCAGGCGGGC
GTTTATCCCTTGGCGGCGGACATTTCACATGTGATTGCCACTAAGCCGGC
AGCAACGCACGTTCATCTTATAACATCGCACATATACAGCCTGCCCTTGC
ACCTGATCAACATACCCAGTTCGAGGGTACTGCACTTTAACCGCCTGACT
CACCAGCGATATCGTCGTCCAAGAGACTTTTATATGTACGAGTACGGAGG
CCTACCCTTGGATTCCCTGCTGCAGAAGGTAAAACTCATCAGTGGGAGCT
GCGAGGTGAAGAAGTCGGGACCAAGTCGGCGGCGCTACAAACTGTATTTG
GCCATTCCGGCGTCACTAAGTGCAGATCTTCACGAGGCTTTAGTACACTC
GAATGCCTCCAGCTACCTTAACTTCGAACTGCTAAAGGTGTTCTATCCAC
ACCTCTCCACGGAGGCGTTCCCTCACCTTCAGGGCAGGCATCCGTGCGAT
GTGGATGCTCCTCATTGGGCGCACGATGATCTGCGGGGCACTTGCTCCGC
GGAGCAGCTGCCAGCGTTTAGCTTCGCCTACCTGAACAAGCAATTCAGCT
CCTTCGTCCATCAACTAGGACTGGCGCTCTACGAGATCGATGTGACGCGC
AACAAGCCGCGGTCTGTAGTAATAAAGAAGGCCTCCATGACGGAAACCGC
GGCGGCAAGCTTTCTAGACCAT
BO15452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45068-RA | 2091 | CG45068-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45069-RB | 3221 | CG45069-RB | 94..2181 | 17..2104 | 10440 | 100 | Plus |
| CG45068-RA | 3221 | CG45068-RA | 94..2181 | 17..2104 | 10440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24412177..24414108 | 173..2104 | 9660 | 100 | Plus |
| 2R | 25286936 | 2R | 24411963..24412120 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:30:12 has no hits.
BO15452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:34 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 1..2091 | 17..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:50 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 62..2167 | 5..2112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:08 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 73..2160 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:35 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 62..2167 | 5..2112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:27 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45068-RA | 94..2181 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:27 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24411963..24412119 | 17..173 | 100 | -> | Plus |
| 2R | 24412178..24414108 | 174..2106 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:08 Download gff for
BO15452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20299486..20299642 | 17..173 | 100 | -> | Plus |
| arm_2R | 20299701..20301631 | 174..2106 | 99 | | Plus |
BO15452.pep Sequence
Translation from 16 to 2122
> BO15452.pep
MRLTTLWQNRSPGDRHLSTYFCFAAVRLLLVFVPQLGYVHPDEFFQSVEV
MTGDHFRLEHTRTWEFNNSLPVRSIVLPFALLRIPWSFYEFVAECLKAWW
QLELLGTYAYVVFPRLIYTLISFSNDYCLFRICRLYGLRFEIRLLAMGSS
WILLVFGTRTFSNSLEMAMCSWLLCLVSECMLRTNTVVYKKEFLEEKYDK
AESISERVRIWKLKNSLPAHNLQHLMAMSTICVAGVFNRPTFLLFGAPMV
FFWLLRGMGTRSITFRDFNLRIALFCLCALPALVLFIFCDSLYYQHLTLG
ELHMMHLSIDNFVFTPWNFIKANLDSAQTASHGVHPCYVHLMVNMPMLFN
VLALASLGAFAQLLLRFFRAEYQVLPRFQSIVSLMSGAIFVPLFFLSLIN
HQEPRFLLPVTFPLILLHAPKLITGFSAKYPFQKDHPLLRLFYDKLLSSK
ASGPYLLKIWYVSNVALTLFFGFIHQAGVYPLAADISHVIATKPAATHVH
LITSHIYSLPLHLINIPSSRVLHFNRLTHQRYRRPRDFYMYEYGGLPLDS
LLQKVKLISGSCEVKKSGPSRRRYKLYLAIPASLSADLHEALVHSNASSY
LNFELLKVFYPHLSTEAFPHLQGRHPCDVDAPHWAHDDLRGTCSAEQLPA
FSFAYLNKQFSSFVHQLGLALYEIDVTRNKPRSVVIKKASMTETAAASFL
DH
BO15452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45068-PA | 696 | CG45068-PA | 1..696 | 1..696 | 3675 | 100 | Plus |
