Clone BO15453 Report

Search the DGRC for BO15453

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS35-RA
Protein status:BO15453.pep: Imported from assembly
Sequenced Size:1012

Clone Sequence Records

BO15453.5prime Sequence

696 bp (691 high quality bases) assembled on 2006-05-29

> BO15453.5prime
GAAGTTATCAGTCGACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCC
TGCCACTGAAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAAC
CAGGAGCAGCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAG
CCTGCGGACGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGG
ATCCCATCACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGG
ACGGCCGTTTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCT
GCCACTGCGGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGT
TCGCCAATGCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCG
CCGGCCATCCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATG
GCCAAAGGGTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGG
AGGTCACCACCACAGACTACTGCCAGAGTTTGCCCACGATCAGGAATCCG
GAGGCCAGGCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGA
TGCGCACGCCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACA
AGGACACGGACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAA

BO15453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2101-PA 981 mRpS35-RA 1..680 17..696 3400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS35-RA 1144 CG2101-RA 114..794 16..696 3405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2781192..2781755 133..696 2820 100 Plus
3L 28110227 3L 2781012..2781130 16..134 595 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:54:45 has no hits.

BO15453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:21 Download gff for BO15453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2101-PA 1..678 17..694 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:35 Download gff for BO15453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2101-PA 1..678 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:00 Download gff for BO15453.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS35-RA 114..794 16..696 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:07 Download gff for BO15453.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS35-RA 114..794 16..696 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:07 Download gff for BO15453.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2781012..2781130 16..134 100 -> Plus
3L 2781194..2781755 135..696 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:00 Download gff for BO15453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2781012..2781130 16..134 100 -> Plus
arm_3L 2781194..2781755 135..696 100   Plus

BO15453.complete Sequence

1012 bp assembled on 2008-08-14

GenBank Submission: FJ633476

> BO15453.complete
GAAGTTATCAGTCGACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCC
TGCCACTGAAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAAC
CAGGAGCAGCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAG
CCTGCGGACGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGG
ATCCCATCACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGG
ACGGCCGTTTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCT
GCCACTGCGGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGT
TCGCCAATGCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCG
CCGGCCATCCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATG
GCCAAAGGGTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGG
AGGTCACCACCACAGACTACTGCCAGAGTTTGCCCACGATCAGGAATCCG
GAGGCCAGGCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGA
TGCGCACGCCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACA
AGGACACGGACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAAGAAG
CAGAACTACGACTACGCCCTGTATCTGCTCACCGCTTGCTATCACGAATC
CTTTGTCACCGAGCCGTGGGAGGCCACCAAATCGGAGGCCGACATGGAGG
TCTATCTGTTCGAGCGTAACCAGTCGAAGGTCTCCGCCGAGGGAATCCTC
AACTGGAACGCCAAGAAGGGTGCTCCAAAAGTGGTTCCCAGCAAGTCATT
CGCTGAATGCGTGGAGAAACTGATAAACGAAGGCGAAAACGAGTACAACT
TGGGCAAATACAAGGAGGAGGTCAAGAAGATGTTGAACATTGCCGCAAGC
TTTCTAGACCAT

BO15453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS35-RA 981 CG2101-PA 1..978 17..994 4890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS35-RA 1144 CG2101-RA 114..1092 16..994 4895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2781192..2782053 133..994 4310 100 Plus
3L 28110227 3L 2781012..2781130 16..134 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:07:03 has no hits.

BO15453.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:27 Download gff for BO15453.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS35-RA 92..1070 16..994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:05 Download gff for BO15453.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS35-RA 115..1092 17..996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:32 Download gff for BO15453.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS35-RA 93..1070 17..996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:28 Download gff for BO15453.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS35-RA 115..1092 17..996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:28 Download gff for BO15453.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2781013..2781130 17..134 100 -> Plus
3L 2781194..2782053 135..996 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:05 Download gff for BO15453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2781013..2781130 17..134 100 -> Plus
arm_3L 2781194..2782053 135..996 99   Plus

BO15453.pep Sequence

Translation from 16 to 1012

> BO15453.pep
MSSALTRLLERLPLKKQTAQSGIRVFSNQEQRQEIEDDEEFRVLSLRTVK
QQMQKRQQVRRDPITPPRTGRMAVDQDWTAVWPGPRSFHPASVPLPLRQG
FTERGAAAPSKFANAELMKIPNFLHLTPPAIRQQCEAIKKFCTPWPKGLE
TEAKWQRHFPLEVTTTDYCQSLPTIRNPEARRVTITLKLSDLKFDAHARD
KFLRLVGDRYNKDTDLVTFVTDRCPQKKQNYDYALYLLTACYHESFVTEP
WEATKSEADMEVYLFERNQSKVSAEGILNWNAKKGAPKVVPSKSFAECVE
KLINEGENEYNLGKYKEEVKKMLNIAASFLDH

BO15453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS35-PA 326 CG2101-PA 1..326 1..326 1720 100 Plus