Clone Sequence Records
BO15453.5prime Sequence
696 bp (691 high quality bases) assembled on 2006-05-29
> BO15453.5prime
GAAGTTATCAGTCGACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCC
TGCCACTGAAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAAC
CAGGAGCAGCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAG
CCTGCGGACGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGG
ATCCCATCACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGG
ACGGCCGTTTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCT
GCCACTGCGGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGT
TCGCCAATGCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCG
CCGGCCATCCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATG
GCCAAAGGGTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGG
AGGTCACCACCACAGACTACTGCCAGAGTTTGCCCACGATCAGGAATCCG
GAGGCCAGGCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGA
TGCGCACGCCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACA
AGGACACGGACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAA
BO15453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2101-PA | 981 | mRpS35-RA | 1..680 | 17..696 | 3400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS35-RA | 1144 | CG2101-RA | 114..794 | 16..696 | 3405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2781192..2781755 | 133..696 | 2820 | 100 | Plus |
3L | 28110227 | 3L | 2781012..2781130 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:45 has no hits.
BO15453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:21 Download gff for
BO15453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2101-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:35 Download gff for
BO15453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2101-PA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:00 Download gff for
BO15453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS35-RA | 114..794 | 16..696 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:07 Download gff for
BO15453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS35-RA | 114..794 | 16..696 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:07 Download gff for
BO15453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2781012..2781130 | 16..134 | 100 | -> | Plus |
3L | 2781194..2781755 | 135..696 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:00 Download gff for
BO15453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2781012..2781130 | 16..134 | 100 | -> | Plus |
arm_3L | 2781194..2781755 | 135..696 | 100 | | Plus |
BO15453.complete Sequence
1012 bp assembled on 2008-08-14
GenBank Submission: FJ633476
> BO15453.complete
GAAGTTATCAGTCGACATGTCCAGTGCGCTGACTCGCCTGTTGGAGCGCC
TGCCACTGAAAAAACAGACGGCGCAAAGCGGTATTCGTGTTTTTTCCAAC
CAGGAGCAGCGGCAAGAAATTGAGGATGATGAAGAATTCCGAGTGCTCAG
CCTGCGGACGGTGAAGCAGCAGATGCAGAAGCGCCAGCAGGTCCGTCGGG
ATCCCATCACACCGCCGCGCACTGGCCGCATGGCGGTGGATCAGGACTGG
ACGGCCGTTTGGCCAGGACCACGTTCGTTCCACCCGGCCAGTGTGCCTCT
GCCACTGCGGCAGGGATTCACGGAACGCGGAGCAGCAGCTCCGTCGAAGT
TCGCCAATGCAGAGCTGATGAAGATACCCAACTTTCTGCACTTGACACCG
CCGGCCATCCGTCAGCAATGCGAAGCCATCAAGAAGTTCTGCACGCCATG
GCCAAAGGGTCTGGAGACAGAGGCCAAGTGGCAGCGCCACTTCCCCCTGG
AGGTCACCACCACAGACTACTGCCAGAGTTTGCCCACGATCAGGAATCCG
GAGGCCAGGCGCGTCACCATTACCCTGAAGCTCTCTGACCTGAAGTTCGA
TGCGCACGCCAGGGATAAGTTCCTGCGCCTGGTGGGCGATCGCTACAACA
AGGACACGGACCTCGTTACCTTCGTCACGGATCGCTGTCCGCAGAAGAAG
CAGAACTACGACTACGCCCTGTATCTGCTCACCGCTTGCTATCACGAATC
CTTTGTCACCGAGCCGTGGGAGGCCACCAAATCGGAGGCCGACATGGAGG
TCTATCTGTTCGAGCGTAACCAGTCGAAGGTCTCCGCCGAGGGAATCCTC
AACTGGAACGCCAAGAAGGGTGCTCCAAAAGTGGTTCCCAGCAAGTCATT
CGCTGAATGCGTGGAGAAACTGATAAACGAAGGCGAAAACGAGTACAACT
TGGGCAAATACAAGGAGGAGGTCAAGAAGATGTTGAACATTGCCGCAAGC
TTTCTAGACCAT
BO15453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS35-RA | 981 | CG2101-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS35-RA | 1144 | CG2101-RA | 114..1092 | 16..994 | 4895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2781192..2782053 | 133..994 | 4310 | 100 | Plus |
3L | 28110227 | 3L | 2781012..2781130 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:07:03 has no hits.
BO15453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:27 Download gff for
BO15453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS35-RA | 92..1070 | 16..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:05 Download gff for
BO15453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS35-RA | 115..1092 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:32 Download gff for
BO15453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS35-RA | 93..1070 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:28 Download gff for
BO15453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS35-RA | 115..1092 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:28 Download gff for
BO15453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2781013..2781130 | 17..134 | 100 | -> | Plus |
3L | 2781194..2782053 | 135..996 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:05 Download gff for
BO15453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2781013..2781130 | 17..134 | 100 | -> | Plus |
arm_3L | 2781194..2782053 | 135..996 | 99 | | Plus |
BO15453.pep Sequence
Translation from 16 to 1012
> BO15453.pep
MSSALTRLLERLPLKKQTAQSGIRVFSNQEQRQEIEDDEEFRVLSLRTVK
QQMQKRQQVRRDPITPPRTGRMAVDQDWTAVWPGPRSFHPASVPLPLRQG
FTERGAAAPSKFANAELMKIPNFLHLTPPAIRQQCEAIKKFCTPWPKGLE
TEAKWQRHFPLEVTTTDYCQSLPTIRNPEARRVTITLKLSDLKFDAHARD
KFLRLVGDRYNKDTDLVTFVTDRCPQKKQNYDYALYLLTACYHESFVTEP
WEATKSEADMEVYLFERNQSKVSAEGILNWNAKKGAPKVVPSKSFAECVE
KLINEGENEYNLGKYKEEVKKMLNIAASFLDH
BO15453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS35-PA | 326 | CG2101-PA | 1..326 | 1..326 | 1720 | 100 | Plus |