Clone Sequence Records
BO15456.3prime Sequence
802 bp (711 high quality bases) assembled on 2006-05-29
> BO15456.3prime
ATGGTCTAGAAAGCTTGCTAATATTTTAGTTAGCCTCTCTAACGCACCTG
GCGGTCTCTCGGTGACCGTGAGCAATCCTGTTCGCCGCTGCCGCATATTG
GAGGAGGTAGTTGGCGCCTGGGACTGTGATCCTGCTCCTGATCCATGTGC
TACGGATAGATCCTCCGTGCAGCCCACCGTATGGCGCTGGGTGCCTCCAC
GCTTTTGCATATAGCTTTGCAGCTCCTCGTTGCATTCGCCGGTGGCATTC
TCCTGGCAGCATTGCATCTGCGCCACCGACTGTTCGTTGAGCGGCGACAG
CTCCTGCACTGCCAAAGGATCTGTGCCGCAATTCGGATTGATATAGTACC
CGGCCGTGTCCATTTGCTGACCCTGAGCTGGACCCACAACGGTGCCCGTG
GCGGGATAGTAGATGTGAAGATTTGCCCCGCCGTCTGAGGCACGACGCCC
AAATGAGCTGGCTCCCATAACAACGGGCGGCTTGAGCAAATGCTGATCCT
TGATGGTGAGGTTGTGCAGGGGTTGGTTCTGCAGCATGGGCAGATTAACT
GGATAGTAGGGAACTGGCTGAGTGGGATCGCTGCACTGCGGTGGACACTT
GAAGTCGATGGGCGGCACATTGGGATTAGCCAGCGCCTGCTCGTGGGCCA
CATCGCCGGGTCCCACTGTATGGCGTCTGGTATTCGCACCATTGACACCT
CCACCAGCGTGTGCNACTCAATGCTGCGCATTAACAGGGGGATCATTTGA
TCGCGCCAGGCATTCCAGCTCAAAATCACCATATTTCTCCAGATCCACGG
CG
BO15456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15072-PA | 2109 | CG15072-RA | 1411..2106 | 714..19 | 3480 | 100 | Minus |
CG15072-PA | 2109 | CG15072-RA | 1323..1405 | 802..720 | 415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:49:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RA | 2983 | CG42856-RA | 1974..2757 | 802..19 | 3875 | 99.7 | Minus |
Sik3-RF | 6011 | CG42856-RF | 2184..2939 | 802..47 | 3735 | 99.7 | Minus |
Sik3-RE | 6020 | CG42856-RE | 2184..2938 | 802..48 | 3730 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18700670..18700953 | 741..458 | 1349 | 98.2 | Minus |
2R | 25286936 | 2R | 18701018..18701261 | 458..215 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 18701317..18701514 | 216..19 | 990 | 100 | Minus |
2R | 25286936 | 2R | 18700551..18700611 | 802..742 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 05:49:51 has no hits.
BO15456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:23 Download gff for
BO15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1323..2109 | 15..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:36 Download gff for
BO15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1323..2109 | 15..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:18:48 Download gff for
BO15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 1974..2760 | 15..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:25 Download gff for
BO15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 1974..2760 | 15..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:25 Download gff for
BO15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18700551..18700611 | 742..802 | 100 | -> | Minus |
2R | 18700670..18700952 | 459..741 | 99 | -> | Minus |
2R | 18701018..18701261 | 215..458 | 100 | -> | Minus |
2R | 18701319..18701517 | 15..214 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:18:48 Download gff for
BO15456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14588056..14588116 | 742..802 | 100 | -> | Minus |
arm_2R | 14588175..14588457 | 459..741 | 99 | -> | Minus |
arm_2R | 14588523..14588766 | 215..458 | 100 | -> | Minus |
arm_2R | 14588824..14589022 | 15..214 | 99 | | Minus |
BO15456.5prime Sequence
802 bp (736 high quality bases) assembled on 2006-05-29
> BO15456.5prime
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGA
ACTGAAAAGTCGCGTGGTGTTGGGCAAATTTCGCATTCCCTTCTTTATGT
CG
BO15456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15072-PA | 2109 | CG15072-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RF | 6011 | CG42856-RF | 862..1647 | 17..802 | 3930 | 100 | Plus |
Sik3-RE | 6020 | CG42856-RE | 862..1647 | 17..802 | 3930 | 100 | Plus |
Sik3-RD | 6278 | CG42856-RD | 862..1647 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18699303..18699640 | 213..550 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 18699702..18699955 | 549..802 | 1270 | 100 | Plus |
2R | 25286936 | 2R | 18692665..18692865 | 17..217 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:53:42 has no hits.
BO15456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:24 Download gff for
BO15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:38 Download gff for
BO15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:27 Download gff for
BO15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RB | 207..997 | 13..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:48 Download gff for
BO15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RD | 857..1647 | 13..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:48 Download gff for
BO15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18692660..18692862 | 13..214 | 99 | -> | Plus |
2R | 18699305..18699640 | 215..550 | 100 | -> | Plus |
2R | 18699704..18699955 | 551..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:27 Download gff for
BO15456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14580165..14580367 | 13..214 | 99 | -> | Plus |
arm_2R | 14586810..14587145 | 215..550 | 100 | -> | Plus |
arm_2R | 14587209..14587460 | 551..802 | 100 | | Plus |
BO15456.complete Sequence
2140 bp assembled on 2008-08-14
GenBank Submission: FJ633477
> BO15456.complete
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGA
ACTGAAAAGTCGCGTGGTGTTGGGCAAATTTCGCATTCCCTTCTTTATGT
CGCAAGAATGCGAGCAGCTAATACGGAACATGCTGGTGGTGGAGCCTGAT
CGGCGATACACTATCAAACAAATCATCAAGCACCGCTGGCTCAGCGAGTG
GCAGTCAGAGATGCAGGAGCAGGAACGTTTCGGTGACATGTCCCCCGGCT
CGGGAACAGTGTCCAAATCGGCGTCCACATCCTCGCTGGGAAGTGCGTCG
GATTCACCGCCGCAACTGGACTCTGTGGTAATGACGCATATGCTCCAATT
GCCCGGACTGACCGCCGACATGATAGCACAGTCGGTGCACGAGCAGAGAT
TCGACAACATCTACGCCATTTACAACCTGCTGCATGACAAGCTGCAGCAA
AGGCGACGCGAAAACCAAAGACTGCAGCACCACGCCAGCCTAGCCTACTC
CCGATCACGTAAGACGAGCATCACGACGGGCGTGGTGGATCGCTCGGAGC
CCGTCAAGCAGGAATCTCTGGACCGACTCAGTCCGTTGAGCAATGCCAAT
GCCTCCAGCTCAGCTTTGGGCTTTGGCTGGTCCGATGTCGCCGTGGATCT
GGAGAAATATGGTGATTTTGAGCTGGAATGCCTGGCGCGATCAAATGATC
CCCCTGTTAATGCGCAGCATTTGAGTGCACACGCTGGTGGAGGTGTCAAT
GGTGCGAATACCAGACGCCATACAGTGGGACCCGGCGATGTGGCCCACGA
GCAGGCGCTGGCTAATCCCAATGTGCCGCCCATCGACTTCAAGTGTCCAC
CGCAGTGCAGCGATCCCACTCAGCCAGTTCCCTACTATCCAGTTAATCTG
CCCATGCTGCAGAACCAACCCCTGCACAACCTCACCATCAAGGATCAGCA
TTTGCTCAAGCCGCCCGTTGTTATGGGAGCCAGCTCATTTGGGCGTCGTG
CCTCAGACGGCGGGGCAAATCTTCACATCTACTATCCCGCCACGGGCACC
GTTGTGGGTCCAGCTCAGGGTCAGCAAATGGACACGGCCGGGTACTATAT
CAATCCGAATTGCGGCACAGATCCTTTGGCAGTGCAGGAGCTGTCGCCGC
TCAACGAACAGTCGGTGGCGCAGATGCAATGCTGCCAGGAGAATGCCACC
GGCGAATGCAACGAGGAGCTGCAAAGCTATATGCAAAAGCGTGGAGGCAC
CCAGCGCCATACGGTGGGCTGCACGGAGGATCTATCCGTAGCACATGGAT
CAGGAGCAGGATCACAGTCCCAGGCGCCAACTACCTCCTCCAATATGCGG
CAGCGGCGAACAGGATTGCTCACGGTCACCGAGAGACCGCCAGGTGCGTT
AGAGAGGCTAACTAAAATATTAGCAAGCTTTCTAGACCAT
BO15456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RA | 2109 | CG42856-PA | 1..2106 | 17..2122 | 10530 | 100 | Plus |
Sik3-RF | 4140 | CG42856-PF | 1..2078 | 17..2094 | 10390 | 100 | Plus |
Sik3-RE | 4149 | CG42856-PE | 1..2077 | 17..2093 | 10385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-RA | 2983 | CG42856-RA | 652..2757 | 17..2122 | 10530 | 100 | Plus |
Sik3-RF | 6011 | CG42856-RF | 862..2939 | 17..2094 | 10390 | 100 | Plus |
Sik3-RE | 6020 | CG42856-RE | 862..2938 | 17..2093 | 10385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18700017..18700611 | 805..1399 | 2975 | 100 | Plus |
2R | 25286936 | 2R | 18699303..18699640 | 213..550 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 18700670..18700953 | 1400..1683 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 18699702..18699959 | 549..806 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 18701018..18701261 | 1683..1926 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 18692665..18692865 | 17..217 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 18701317..18701514 | 1925..2122 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:04 has no hits.
BO15456.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:31 Download gff for
BO15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-RC | 645..2758 | 13..2126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:15 Download gff for
BO15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 652..2757 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:54 Download gff for
BO15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15072-RC | 650..2755 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:26 Download gff for
BO15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sik3-RA | 652..2757 | 17..2124 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:26 Download gff for
BO15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18701018..18701261 | 1683..1926 | 100 | -> | Plus |
2R | 18701319..18701514 | 1927..2124 | 98 | | Plus |
2R | 18692665..18692862 | 17..214 | 100 | -> | Plus |
2R | 18700670..18700952 | 1400..1682 | 100 | -> | Plus |
2R | 18699305..18699640 | 215..550 | 100 | -> | Plus |
2R | 18699704..18699959 | 551..806 | 100 | -> | Plus |
2R | 18700019..18700611 | 807..1399 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:15 Download gff for
BO15456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14588175..14588457 | 1400..1682 | 100 | -> | Plus |
arm_2R | 14580170..14580367 | 17..214 | 100 | -> | Plus |
arm_2R | 14586810..14587145 | 215..550 | 100 | -> | Plus |
arm_2R | 14587209..14587464 | 551..806 | 100 | -> | Plus |
arm_2R | 14587524..14588116 | 807..1399 | 100 | -> | Plus |
arm_2R | 14588523..14588766 | 1683..1926 | 100 | -> | Plus |
arm_2R | 14588824..14589019 | 1927..2124 | 98 | | Plus |
BO15456.pep Sequence
Translation from 16 to 2140
> BO15456.pep
MATTPTAGPAAAPPTSSTPQNYKVPSTSKISVDKLLRVGYYELEKTIGKG
NFAVVKLATNIVTKTKVAIKIIDKTCLNEEYLNKTFREIAILKSLRHPHI
TRLYEVMESQSMIYLVTEYAPNGEIFDHLVANGRMKEPEAARVFTQLVSA
VHYCHRRGVVHRDLKAENVLLDKDMNIKLADFGFSNHYEEGATLKTWCGS
PPYAAPEVFQGLEYDGPKSDIWSLGVVLYALVCGALPFDGKTILELKSRV
VLGKFRIPFFMSQECEQLIRNMLVVEPDRRYTIKQIIKHRWLSEWQSEMQ
EQERFGDMSPGSGTVSKSASTSSLGSASDSPPQLDSVVMTHMLQLPGLTA
DMIAQSVHEQRFDNIYAIYNLLHDKLQQRRRENQRLQHHASLAYSRSRKT
SITTGVVDRSEPVKQESLDRLSPLSNANASSSALGFGWSDVAVDLEKYGD
FELECLARSNDPPVNAQHLSAHAGGGVNGANTRRHTVGPGDVAHEQALAN
PNVPPIDFKCPPQCSDPTQPVPYYPVNLPMLQNQPLHNLTIKDQHLLKPP
VVMGASSFGRRASDGGANLHIYYPATGTVVGPAQGQQMDTAGYYINPNCG
TDPLAVQELSPLNEQSVAQMQCCQENATGECNEELQSYMQKRGGTQRHTV
GCTEDLSVAHGSGAGSQSQAPTTSSNMRQRRTGLLTVTERPPGALERLTK
ILASFLDH
BO15456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sik3-PA | 702 | CG15072-PA | 1..702 | 1..702 | 3677 | 100 | Plus |
Sik3-PE | 1382 | CG42856-PE | 1..701 | 1..701 | 3638 | 98.9 | Plus |
Sik3-PF | 1379 | CG42856-PF | 1..693 | 1..693 | 3637 | 100 | Plus |
Sik3-PD | 1468 | CG42856-PD | 1..692 | 1..692 | 3631 | 100 | Plus |
Sik3-PC | 1471 | CG18604-PA | 1..692 | 1..692 | 3631 | 100 | Plus |