Clone BO15456 Report

Search the DGRC for BO15456

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG42856-RA
Protein status:BO15456.pep: Imported from assembly
Sequenced Size:2140

Clone Sequence Records

BO15456.3prime Sequence

802 bp (711 high quality bases) assembled on 2006-05-29

> BO15456.3prime
ATGGTCTAGAAAGCTTGCTAATATTTTAGTTAGCCTCTCTAACGCACCTG
GCGGTCTCTCGGTGACCGTGAGCAATCCTGTTCGCCGCTGCCGCATATTG
GAGGAGGTAGTTGGCGCCTGGGACTGTGATCCTGCTCCTGATCCATGTGC
TACGGATAGATCCTCCGTGCAGCCCACCGTATGGCGCTGGGTGCCTCCAC
GCTTTTGCATATAGCTTTGCAGCTCCTCGTTGCATTCGCCGGTGGCATTC
TCCTGGCAGCATTGCATCTGCGCCACCGACTGTTCGTTGAGCGGCGACAG
CTCCTGCACTGCCAAAGGATCTGTGCCGCAATTCGGATTGATATAGTACC
CGGCCGTGTCCATTTGCTGACCCTGAGCTGGACCCACAACGGTGCCCGTG
GCGGGATAGTAGATGTGAAGATTTGCCCCGCCGTCTGAGGCACGACGCCC
AAATGAGCTGGCTCCCATAACAACGGGCGGCTTGAGCAAATGCTGATCCT
TGATGGTGAGGTTGTGCAGGGGTTGGTTCTGCAGCATGGGCAGATTAACT
GGATAGTAGGGAACTGGCTGAGTGGGATCGCTGCACTGCGGTGGACACTT
GAAGTCGATGGGCGGCACATTGGGATTAGCCAGCGCCTGCTCGTGGGCCA
CATCGCCGGGTCCCACTGTATGGCGTCTGGTATTCGCACCATTGACACCT
CCACCAGCGTGTGCNACTCAATGCTGCGCATTAACAGGGGGATCATTTGA
TCGCGCCAGGCATTCCAGCTCAAAATCACCATATTTCTCCAGATCCACGG
CG

BO15456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15072-PA 2109 CG15072-RA 1411..2106 714..19 3480 100 Minus
CG15072-PA 2109 CG15072-RA 1323..1405 802..720 415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RA 2983 CG42856-RA 1974..2757 802..19 3875 99.7 Minus
Sik3-RF 6011 CG42856-RF 2184..2939 802..47 3735 99.7 Minus
Sik3-RE 6020 CG42856-RE 2184..2938 802..48 3730 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18700670..18700953 741..458 1349 98.2 Minus
2R 25286936 2R 18701018..18701261 458..215 1220 100 Minus
2R 25286936 2R 18701317..18701514 216..19 990 100 Minus
2R 25286936 2R 18700551..18700611 802..742 305 100 Minus
Blast to na_te.dros performed on 2015-02-03 05:49:51 has no hits.

BO15456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:23 Download gff for BO15456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1323..2109 15..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:36 Download gff for BO15456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1323..2109 15..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:18:48 Download gff for BO15456.3prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 1974..2760 15..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:34:25 Download gff for BO15456.3prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 1974..2760 15..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:34:25 Download gff for BO15456.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18700551..18700611 742..802 100 -> Minus
2R 18700670..18700952 459..741 99 -> Minus
2R 18701018..18701261 215..458 100 -> Minus
2R 18701319..18701517 15..214 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:18:48 Download gff for BO15456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14588056..14588116 742..802 100 -> Minus
arm_2R 14588175..14588457 459..741 99 -> Minus
arm_2R 14588523..14588766 215..458 100 -> Minus
arm_2R 14588824..14589022 15..214 99   Minus

BO15456.5prime Sequence

802 bp (736 high quality bases) assembled on 2006-05-29

> BO15456.5prime
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGA
ACTGAAAAGTCGCGTGGTGTTGGGCAAATTTCGCATTCCCTTCTTTATGT
CG

BO15456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15072-PA 2109 CG15072-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RF 6011 CG42856-RF 862..1647 17..802 3930 100 Plus
Sik3-RE 6020 CG42856-RE 862..1647 17..802 3930 100 Plus
Sik3-RD 6278 CG42856-RD 862..1647 17..802 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18699303..18699640 213..550 1690 100 Plus
2R 25286936 2R 18699702..18699955 549..802 1270 100 Plus
2R 25286936 2R 18692665..18692865 17..217 1005 100 Plus
Blast to na_te.dros performed on 2015-02-02 07:53:42 has no hits.

BO15456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:24 Download gff for BO15456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:38 Download gff for BO15456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15072-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:27 Download gff for BO15456.5prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RB 207..997 13..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:48 Download gff for BO15456.5prime
Subject Subject Range Query Range Percent Splice Strand
Sik3-RD 857..1647 13..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:48 Download gff for BO15456.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18692660..18692862 13..214 99 -> Plus
2R 18699305..18699640 215..550 100 -> Plus
2R 18699704..18699955 551..802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:27 Download gff for BO15456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14580165..14580367 13..214 99 -> Plus
arm_2R 14586810..14587145 215..550 100 -> Plus
arm_2R 14587209..14587460 551..802 100   Plus

BO15456.complete Sequence

2140 bp assembled on 2008-08-14

GenBank Submission: FJ633477

> BO15456.complete
GAAGTTATCAGTCGACATGGCCACCACACCAACGGCTGGGCCAGCAGCAG
CTCCTCCAACGTCCTCAACGCCGCAGAACTACAAGGTGCCATCGACCAGC
AAGATATCCGTGGACAAGCTCCTCCGGGTCGGCTACTATGAGCTGGAGAA
GACCATCGGCAAGGGCAACTTTGCAGTGGTCAAGCTGGCTACCAACATTG
TGACCAAGACAAAGGTGGCCATCAAGATCATAGACAAAACATGTCTGAAC
GAGGAGTACCTGAACAAGACGTTCCGCGAGATAGCGATCCTTAAATCGCT
GCGGCATCCACACATCACGCGATTGTACGAGGTGATGGAGTCGCAGTCGA
TGATCTATCTGGTCACCGAGTACGCGCCAAACGGGGAGATCTTCGACCAT
CTGGTGGCCAATGGCAGGATGAAGGAGCCGGAGGCGGCACGTGTCTTCAC
CCAACTCGTCTCGGCCGTTCACTACTGCCACCGGCGCGGGGTGGTGCATC
GCGATCTCAAGGCCGAGAATGTCCTTCTCGACAAGGACATGAACATCAAG
CTTGCCGACTTTGGCTTTAGTAATCACTATGAAGAGGGTGCCACCTTAAA
AACTTGGTGTGGATCACCGCCCTATGCCGCTCCAGAGGTTTTCCAAGGCT
TGGAATACGATGGACCCAAGTCGGATATCTGGAGTTTGGGCGTTGTGCTG
TACGCCTTGGTTTGTGGAGCATTACCTTTCGATGGAAAGACTATCCTGGA
ACTGAAAAGTCGCGTGGTGTTGGGCAAATTTCGCATTCCCTTCTTTATGT
CGCAAGAATGCGAGCAGCTAATACGGAACATGCTGGTGGTGGAGCCTGAT
CGGCGATACACTATCAAACAAATCATCAAGCACCGCTGGCTCAGCGAGTG
GCAGTCAGAGATGCAGGAGCAGGAACGTTTCGGTGACATGTCCCCCGGCT
CGGGAACAGTGTCCAAATCGGCGTCCACATCCTCGCTGGGAAGTGCGTCG
GATTCACCGCCGCAACTGGACTCTGTGGTAATGACGCATATGCTCCAATT
GCCCGGACTGACCGCCGACATGATAGCACAGTCGGTGCACGAGCAGAGAT
TCGACAACATCTACGCCATTTACAACCTGCTGCATGACAAGCTGCAGCAA
AGGCGACGCGAAAACCAAAGACTGCAGCACCACGCCAGCCTAGCCTACTC
CCGATCACGTAAGACGAGCATCACGACGGGCGTGGTGGATCGCTCGGAGC
CCGTCAAGCAGGAATCTCTGGACCGACTCAGTCCGTTGAGCAATGCCAAT
GCCTCCAGCTCAGCTTTGGGCTTTGGCTGGTCCGATGTCGCCGTGGATCT
GGAGAAATATGGTGATTTTGAGCTGGAATGCCTGGCGCGATCAAATGATC
CCCCTGTTAATGCGCAGCATTTGAGTGCACACGCTGGTGGAGGTGTCAAT
GGTGCGAATACCAGACGCCATACAGTGGGACCCGGCGATGTGGCCCACGA
GCAGGCGCTGGCTAATCCCAATGTGCCGCCCATCGACTTCAAGTGTCCAC
CGCAGTGCAGCGATCCCACTCAGCCAGTTCCCTACTATCCAGTTAATCTG
CCCATGCTGCAGAACCAACCCCTGCACAACCTCACCATCAAGGATCAGCA
TTTGCTCAAGCCGCCCGTTGTTATGGGAGCCAGCTCATTTGGGCGTCGTG
CCTCAGACGGCGGGGCAAATCTTCACATCTACTATCCCGCCACGGGCACC
GTTGTGGGTCCAGCTCAGGGTCAGCAAATGGACACGGCCGGGTACTATAT
CAATCCGAATTGCGGCACAGATCCTTTGGCAGTGCAGGAGCTGTCGCCGC
TCAACGAACAGTCGGTGGCGCAGATGCAATGCTGCCAGGAGAATGCCACC
GGCGAATGCAACGAGGAGCTGCAAAGCTATATGCAAAAGCGTGGAGGCAC
CCAGCGCCATACGGTGGGCTGCACGGAGGATCTATCCGTAGCACATGGAT
CAGGAGCAGGATCACAGTCCCAGGCGCCAACTACCTCCTCCAATATGCGG
CAGCGGCGAACAGGATTGCTCACGGTCACCGAGAGACCGCCAGGTGCGTT
AGAGAGGCTAACTAAAATATTAGCAAGCTTTCTAGACCAT

BO15456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RA 2109 CG42856-PA 1..2106 17..2122 10530 100 Plus
Sik3-RF 4140 CG42856-PF 1..2078 17..2094 10390 100 Plus
Sik3-RE 4149 CG42856-PE 1..2077 17..2093 10385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-RA 2983 CG42856-RA 652..2757 17..2122 10530 100 Plus
Sik3-RF 6011 CG42856-RF 862..2939 17..2094 10390 100 Plus
Sik3-RE 6020 CG42856-RE 862..2938 17..2093 10385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18700017..18700611 805..1399 2975 100 Plus
2R 25286936 2R 18699303..18699640 213..550 1690 100 Plus
2R 25286936 2R 18700670..18700953 1400..1683 1420 100 Plus
2R 25286936 2R 18699702..18699959 549..806 1290 100 Plus
2R 25286936 2R 18701018..18701261 1683..1926 1220 100 Plus
2R 25286936 2R 18692665..18692865 17..217 1005 100 Plus
2R 25286936 2R 18701317..18701514 1925..2122 990 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:27:04 has no hits.

BO15456.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:31 Download gff for BO15456.complete
Subject Subject Range Query Range Percent Splice Strand
CG15072-RC 645..2758 13..2126 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:15 Download gff for BO15456.complete
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 652..2757 17..2124 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:54 Download gff for BO15456.complete
Subject Subject Range Query Range Percent Splice Strand
CG15072-RC 650..2755 17..2124 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:26 Download gff for BO15456.complete
Subject Subject Range Query Range Percent Splice Strand
Sik3-RA 652..2757 17..2124 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:26 Download gff for BO15456.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18701018..18701261 1683..1926 100 -> Plus
2R 18701319..18701514 1927..2124 98   Plus
2R 18692665..18692862 17..214 100 -> Plus
2R 18700670..18700952 1400..1682 100 -> Plus
2R 18699305..18699640 215..550 100 -> Plus
2R 18699704..18699959 551..806 100 -> Plus
2R 18700019..18700611 807..1399 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:15 Download gff for BO15456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14588175..14588457 1400..1682 100 -> Plus
arm_2R 14580170..14580367 17..214 100 -> Plus
arm_2R 14586810..14587145 215..550 100 -> Plus
arm_2R 14587209..14587464 551..806 100 -> Plus
arm_2R 14587524..14588116 807..1399 100 -> Plus
arm_2R 14588523..14588766 1683..1926 100 -> Plus
arm_2R 14588824..14589019 1927..2124 98   Plus

BO15456.pep Sequence

Translation from 16 to 2140

> BO15456.pep
MATTPTAGPAAAPPTSSTPQNYKVPSTSKISVDKLLRVGYYELEKTIGKG
NFAVVKLATNIVTKTKVAIKIIDKTCLNEEYLNKTFREIAILKSLRHPHI
TRLYEVMESQSMIYLVTEYAPNGEIFDHLVANGRMKEPEAARVFTQLVSA
VHYCHRRGVVHRDLKAENVLLDKDMNIKLADFGFSNHYEEGATLKTWCGS
PPYAAPEVFQGLEYDGPKSDIWSLGVVLYALVCGALPFDGKTILELKSRV
VLGKFRIPFFMSQECEQLIRNMLVVEPDRRYTIKQIIKHRWLSEWQSEMQ
EQERFGDMSPGSGTVSKSASTSSLGSASDSPPQLDSVVMTHMLQLPGLTA
DMIAQSVHEQRFDNIYAIYNLLHDKLQQRRRENQRLQHHASLAYSRSRKT
SITTGVVDRSEPVKQESLDRLSPLSNANASSSALGFGWSDVAVDLEKYGD
FELECLARSNDPPVNAQHLSAHAGGGVNGANTRRHTVGPGDVAHEQALAN
PNVPPIDFKCPPQCSDPTQPVPYYPVNLPMLQNQPLHNLTIKDQHLLKPP
VVMGASSFGRRASDGGANLHIYYPATGTVVGPAQGQQMDTAGYYINPNCG
TDPLAVQELSPLNEQSVAQMQCCQENATGECNEELQSYMQKRGGTQRHTV
GCTEDLSVAHGSGAGSQSQAPTTSSNMRQRRTGLLTVTERPPGALERLTK
ILASFLDH

BO15456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Sik3-PA 702 CG15072-PA 1..702 1..702 3677 100 Plus
Sik3-PE 1382 CG42856-PE 1..701 1..701 3638 98.9 Plus
Sik3-PF 1379 CG42856-PF 1..693 1..693 3637 100 Plus
Sik3-PD 1468 CG42856-PD 1..692 1..692 3631 100 Plus
Sik3-PC 1471 CG18604-PA 1..692 1..692 3631 100 Plus