Clone Sequence Records
BO15457.3prime Sequence
735 bp (733 high quality bases) assembled on 2006-05-29
> BO15457.3prime
ATGGTCTAGAAAGCTTGCCAGATCCTTATCGTACACAAACTCCTCTTCCT
CCTCTTCTTCCATGATCAGGCCGACCATGTCGTCCTCCTCGGTCTCGGCG
GCCGATTGAAACTCCTCATCGGATTCCTTCATCGACTCAATGGTGATCTG
CGTGTCCTCGGTCACAGCCGGATTGAGTGACTGCTCCTCCGGGTCCAGGT
GCTGCTCCTCCAGTTCCAGGTGGTGCTCCTCCAGGTCCAGGTGCTGCTCC
TCCGGGTCCAGGTGCTGCTCCTCCAGGTCCAGGTGATGCTCCTCCGGGTC
CAGGTGCTGCTCCTCCAGATCGAGGTGCTGCTCCTCGGTGTCCTGATCCT
CGTCTTGTCGCTGCTGGCTCGCATACCCTGCGTTTTCCGACCCGCCAGAT
TCCAGTTTCTCTTCCTTCTCTGTGTCTGTGTCCATGGGATGGCTACTGTG
GTCCATCTTGTCAACTTCGCTGTTCTCCTTCCCTTCAACCTGCTTTGGAC
TGCCTTTCGCTTTTGTCTTGGAGGTATCTGCGGCGGGCTCCTCATCTGCC
CCATGCTTGTGATCCTGCACATGGTCCTCATCGGTCTCGTCCTCGGATTT
CAGCGATTTAATATCGTCGTCGCCATCCGCCACGCGACTCAAGCTCTTCT
CCTCCAAGCGTCTGCTGATGTCCATGGCTATGTACTCCAGCCGCCCCTGG
ACACTCATCTGGAACACCTCGCGGTTTTCGCTGCA
BO15457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3480-PA | 2961 | mip130-RA | 2242..2958 | 735..19 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip130-RA | 3459 | CG3480-RA | 2356..3072 | 735..19 | 3585 | 100 | Minus |
mip130-RA | 3459 | CG3480-RA | 2790..2909 | 343..224 | 450 | 91.7 | Minus |
mip130-RA | 3459 | CG3480-RA | 2755..2847 | 273..181 | 375 | 93.5 | Minus |
mip130-RA | 3459 | CG3480-RA | 2818..2910 | 336..244 | 375 | 93.5 | Minus |
mip130-RA | 3459 | CG3480-RA | 2832..2910 | 343..265 | 260 | 88.6 | Minus |
mip130-RA | 3459 | CG3480-RA | 2860..2909 | 336..287 | 205 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1919215..1919931 | 735..19 | 3585 | 100 | Minus |
X | 23542271 | X | 1919649..1919768 | 343..224 | 450 | 91.7 | Minus |
X | 23542271 | X | 1919614..1919706 | 273..181 | 375 | 93.5 | Minus |
X | 23542271 | X | 1919677..1919769 | 336..244 | 375 | 93.5 | Minus |
X | 23542271 | X | 1919691..1919769 | 343..265 | 260 | 88.6 | Minus |
X | 23542271 | X | 1919719..1919768 | 336..287 | 205 | 94 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:14:35 has no hits.
BO15457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:24 Download gff for
BO15457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3480-PA | 2243..2961 | 18..734 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:39 Download gff for
BO15457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3480-PA | 2243..2961 | 18..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:44:18 Download gff for
BO15457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 2383..3098 | 19..734 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:54 Download gff for
BO15457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 2357..3072 | 19..734 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:54 Download gff for
BO15457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1919216..1919931 | 19..734 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:44:18 Download gff for
BO15457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1813249..1813964 | 19..734 | 100 | | Minus |
BO15457.5prime Sequence
822 bp (805 high quality bases) assembled on 2006-05-29
> BO15457.5prime
GAAGTTATCAGTCGACATGCTTACCGGCCGTCCAGTGAGAATGTCCGTTG
CAGTAAACCAAAAAGGCTGGGGTAAGAAGGCAGGAGCTTCCGTATCCGAC
TCCGCAATTCGTACACAGTCCGCCCTCAGCGAGGGGGGTGGGGCCATTGA
CGTCCGGCCGATGGAGCACGACGAGGAAATCAATCGCGAAGATCTCAACC
TCGACGAGGACGATGAGATGGAGGAGGAGGAGGAGGAGGAGCACGCCGAC
GAAGAGGACGATGACGAGGAGCCGGATAGCAACGAGAACAGCGCACCGGA
GGAGCAAGTAGAGCCGCCGGCCTTCAGCCTAGCGACGCTGGGACTCCAAC
GCGTGGGCAGCGCACCGCCGCCCAAGCCCAAAGTCCAGAAGGCCCCAATC
CCGACCCTAAATGCCCGTGGAATGCCTGCTCGGATACGAAAGAGAAATCG
TCTCTTTTATGACGAGAACATCATCAACGATGACAAGCCGCTGCGCATGA
GCTTGGCACCCAAGAAGACGCCTGGCAGACCACCGCAGTCTGCCGGCGGT
GGCTCTAGCCAGAAGATCCCGCTTACCCCGTCTAAGGTGCTGAAGAAGCG
CAAGGGAGTGGTCTCCCGCTACATGCGTTCCAGTGAGCAGGGAACCAACT
CCGTTTCGGCCAGCAATCAGCCCCAGCTGTTGGGCAAGCACAAGAAGGCG
ACGCCATCGAAGAGCCAGTCGGTGGGCAGCAAGCTGGGCTCCGGTGGACC
GAAAACAGGGCGGGGTGCCCATTTCATTGGAAAGGGTACCGCTGCAGCGG
TGGCTGCAGTAACAGCCGCCGA
BO15457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3480-PA | 2961 | mip130-RA | 1..806 | 17..822 | 4005 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip130-RA | 3459 | CG3480-RA | 115..920 | 17..822 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1916976..1917779 | 19..822 | 4005 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:30:00 has no hits.
BO15457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:25 Download gff for
BO15457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3480-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:40 Download gff for
BO15457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3480-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:01 Download gff for
BO15457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 141..945 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:38 Download gff for
BO15457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 115..919 | 17..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:38 Download gff for
BO15457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1916974..1917778 | 16..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:01 Download gff for
BO15457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1811007..1811811 | 16..821 | 99 | | Plus |
BO15457.complete Sequence
2992 bp assembled on 2006-10-11
GenBank Submission: FJ633478
> BO15457.complete
GAAGTTATCAGTCGACATGCTTACCGGCCGTCCAGTGAGAATGTCCGTTG
CAGTAAACCAAAAAGGCTGGGGTAAGAAGGCAGGAGCTTCCGTATCCGAC
TCCGCAATTCGTACACAGTCCGCCCTCAGCGAGGGGGGTGGGGCCATTGA
CGTCCGGCCGATGGAGCACGACGAGGAAATCAATCGCGAAGATCTCAACC
TCGACGAGGACGATGAGATGGAGGAGGAGGAGGAGGAGGAGCACGCCGAC
GAAGAGGACGATGACGAGGAGCCGGATAGCAACGAGAACAGCGCACCGGA
GGAGCAAGTAGAGCCGCCGGCCTTCAGCCTAGCGACGCTGGGACTCCAAC
GCGTGGGCAGCGCACCGCCGCCCAAGCCCAAAGTCCAGAAGGCCCCAATC
CCGACCCTAAATGCCCGTGGAATGCCTGCTCGGATACGAAAGAGAAATCG
TCTCTTTTATGACGAGAACATCATCAACGATGACAAGCCGCTGCGCATGA
GCTTGGCACCCAAGAAGACGCCTGGCAGACCACCGCAGTCTGCCGGCGGT
GGCTCTAGCCAGAAGATCCCGCTTACCCCGTCTAAGGTGCTGAAGAAGCG
CAAGGGAGTGGTCTCCCGCTACATGCGTTCCAGTGAGCAGGGAACCAACT
CCGTTTCGGCCAGCAATCAGCCCCAGCTGTTGGGCAAGCACAAGAAGGCG
ACGCCATCGAAGAGCCAGTCGGTGGGCAGCAAGCTGGGCTCCGGTGGACC
GAAAACAGGGCGGGGTGCCCATTTCATTGGAAAGGGTACCGCTGCAGCGG
TGGCTGCAGTAGCAGCCGCCGAGGAGGAAGCTAACCAGGCTGAGGCTGCA
GCGCTGGCGAACAAGCGGTTGGGCCAGTCCATTGGTCTTCGGCTGCGCAA
TCTGCTCAAGTTGCCCAAAGCGCACAAGTGGGCCATAGCCGAGTGGTTCT
ACTCGTACGTTGACAAGCCGCTATTCGAATGCCGTGATGAGTTTATGAAC
CATGTGAATGAACTGGCACCCAGGCTGGGCACACGGAGCCTCATTCGCCA
CGAGTGGGTGAATATTAGGCGGAGGATGGGCAGGCCGCGGCGATGCTCCG
CCAAATTTTTCAGCGAGGAGCGCAAGGAGTTGGACCGAAAGCGTCAGGTG
ATCCGGACCCTGCAATCGCGGAAGCCAGGCGAGTTCAAGGACTCCGTTTC
CATGCTATCGGACATGCCTGAGAAAATACCGATGACACTGCCGCTGGGCA
CCAAGGTCACTGCCAGATTAAGATCTCCCCAGGACGGGATCTTTGCGGGC
ACTGTGGCCGCCTACGACTCACTAAACGCCATGTACCGAGTGACCTTCGA
ACGAATCGGCTTGGGCACACACGCCATCCCCGACTACGAGATTGTGTCGG
AGAACTTTCACGAGATGCTGCCTCTGCACAGCTTCACGAAGGATTTCCGG
CCGAACTTGATGAGCATCTATCAAACGAATAACCTCGGCTTCACCACCAA
TCTGGGCTTCACGGCAAATCTTACCAACAACTATCTGCAGAAGAAGGAAA
AAATAGACGGCGGTGCAGGAGCGGCAGCTGGAGCGGGATCACTCTACTTC
AAGCCACAGAAGCACCTGGCCACCAATAATGCGGCTGCACGAAATGCGCT
CAGCATGAAGCTGAACAAGAGTGATCCGCTGCTGGGACAGGATTCGGTGG
GCGTGAGTCCCATTCGGCAGCAGTTGACGAGAAATCGCGGCTACTCCACC
TCGCTGTTGGAGCACCTGGTGCGCCTGGAGAAGTACATTGCAGTTAAGGC
GGATCGAATCCAGCGGCTCAACAAGATGAACGGCACCGCCGAGCTGGCCA
TGGGCGATATGATAAGCCATGACGAGAATGGGGATCGCCATCGCCGACAG
ATTGCAGTCAACTTCCAGCGCCAGTATGCCTTCAACATCGTGACCATCGA
GCGCATCAACGCCGAGCTCATGTTCGAGCTCACCAAGGTGCAGGAGCTGT
CCTCCAGCCTGACACGCAATCCCAATGTCCAGGCCATGATTTCGCCGACA
TATTTGCGCGAAGAGTGCCGCGCCAAGGCGTCACAGACGGTCGACGACAT
CAACAAGGGCATGGTGAAGAATACGCGGATGATAAAGCTGCTGAAGGACC
TGACCACGCTGTTGATCGTGACCCAGAATCTCGGCGGCGACTGCGAAGTG
AGCGAGGTTAACGAGGTGCTCGAAGGCTGCCTCGAGGAAGTGCGCAGCAA
TCTAATCTGCAGCGAAAACCGCGAGGTGTTCCAGATGAGTGTCCAGGGGC
GGCTGGAGTACATAGCCATGGACATCAGCAGACGCTTGGAGGAGAAGAGC
TTGAGTCGCGTGGCGGATGGCGACGACGATATTAAATCGCTGAAATCCGA
GGACGAGACCGATGAGGACCATGTGCAGGATCACAAGCATGGGGCAGATG
AGGAGCCCGCCGCAGATACCTCCAAGACAAAAGCGAAAGGCAGTCCAAAG
CAGGTTGAAGGGAAGGAGAACAGCGAAGTTGACAAGATGGACCACAGTAG
CCATCCCATGGACACAGACACAGAGAAGGAAGAGAAACTGGAATCTGGCG
GGTCGGAAAACGCAGGGTATGCGAGCCAGCAGCGACAAGACGAGGATCAG
GACACCGAGGAGCAGCACCTCGATCTGGAGGAGCAGCACCTGGACCCGGA
GGAGCATCACCTGGACCTGGAGGAGCAGCACCTGGACCCGGAGGAGCAGC
ACCTGGACCTGGAGGAGCACCACCTGGAACTGGAGGAGCAGCACCTGGAC
CCGGAGGAGCAGTCACTCAATCCGGCTGTGACCGAGGACACGCAGATCAC
CATTGAGTCGATGAAGGAATCCGATGAGGAGTTTCAATCGGCCGCCGAGA
CCGAGGAGGACGACATGGTCGGCCTGATCATGGAAGAAGAGGAGGAAGAG
GAGTTTGTGTACGATAAGGATCTGGCAAGCTTTCTAGACCAT
BO15457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip130-RA | 2961 | CG3480-PA | 1..2958 | 17..2974 | 14790 | 100 | Plus |
mip130-RA | 2961 | CG3480-PA | 2676..2795 | 2650..2769 | 450 | 91.7 | Plus |
mip130-RA | 2961 | CG3480-PA | 2641..2733 | 2720..2812 | 375 | 93.5 | Plus |
mip130-RA | 2961 | CG3480-PA | 2704..2796 | 2657..2749 | 375 | 93.5 | Plus |
mip130-RA | 2961 | CG3480-PA | 2718..2796 | 2650..2728 | 260 | 88.6 | Plus |
mip130-RA | 2961 | CG3480-PA | 2746..2795 | 2657..2706 | 205 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip130-RA | 3459 | CG3480-RA | 115..3072 | 17..2974 | 14790 | 100 | Plus |
mip130-RA | 3459 | CG3480-RA | 2790..2909 | 2650..2769 | 450 | 91.7 | Plus |
mip130-RA | 3459 | CG3480-RA | 2755..2847 | 2720..2812 | 375 | 93.5 | Plus |
mip130-RA | 3459 | CG3480-RA | 2818..2910 | 2657..2749 | 375 | 93.5 | Plus |
mip130-RA | 3459 | CG3480-RA | 2832..2910 | 2650..2728 | 260 | 88.6 | Plus |
mip130-RA | 3459 | CG3480-RA | 2860..2909 | 2657..2706 | 205 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1916976..1919931 | 19..2974 | 14780 | 100 | Plus |
X | 23542271 | X | 1919649..1919768 | 2650..2769 | 450 | 91.7 | Plus |
X | 23542271 | X | 1919614..1919706 | 2720..2812 | 375 | 93.5 | Plus |
X | 23542271 | X | 1919677..1919769 | 2657..2749 | 375 | 93.5 | Plus |
X | 23542271 | X | 1919691..1919769 | 2650..2728 | 260 | 88.6 | Plus |
X | 23542271 | X | 1919719..1919768 | 2657..2706 | 205 | 94 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:37 has no hits.
BO15457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:35 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 1..2961 | 17..2975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:15 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 111..3071 | 17..2975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:04 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 141..3098 | 17..2976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:36 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 111..3071 | 17..2975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:32 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mip130-RA | 115..3072 | 17..2976 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:32 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1916975..1919931 | 17..2976 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:04 Download gff for
BO15457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1811008..1813964 | 17..2976 | 99 | | Plus |
BO15457.pep Sequence
Translation from 16 to 2992
> BO15457.pep
MLTGRPVRMSVAVNQKGWGKKAGASVSDSAIRTQSALSEGGGAIDVRPME
HDEEINREDLNLDEDDEMEEEEEEEHADEEDDDEEPDSNENSAPEEQVEP
PAFSLATLGLQRVGSAPPPKPKVQKAPIPTLNARGMPARIRKRNRLFYDE
NIINDDKPLRMSLAPKKTPGRPPQSAGGGSSQKIPLTPSKVLKKRKGVVS
RYMRSSEQGTNSVSASNQPQLLGKHKKATPSKSQSVGSKLGSGGPKTGRG
AHFIGKGTAAAVAAVAAAEEEANQAEAAALANKRLGQSIGLRLRNLLKLP
KAHKWAIAEWFYSYVDKPLFECRDEFMNHVNELAPRLGTRSLIRHEWVNI
RRRMGRPRRCSAKFFSEERKELDRKRQVIRTLQSRKPGEFKDSVSMLSDM
PEKIPMTLPLGTKVTARLRSPQDGIFAGTVAAYDSLNAMYRVTFERIGLG
THAIPDYEIVSENFHEMLPLHSFTKDFRPNLMSIYQTNNLGFTTNLGFTA
NLTNNYLQKKEKIDGGAGAAAGAGSLYFKPQKHLATNNAAARNALSMKLN
KSDPLLGQDSVGVSPIRQQLTRNRGYSTSLLEHLVRLEKYIAVKADRIQR
LNKMNGTAELAMGDMISHDENGDRHRRQIAVNFQRQYAFNIVTIERINAE
LMFELTKVQELSSSLTRNPNVQAMISPTYLREECRAKASQTVDDINKGMV
KNTRMIKLLKDLTTLLIVTQNLGGDCEVSEVNEVLEGCLEEVRSNLICSE
NREVFQMSVQGRLEYIAMDISRRLEEKSLSRVADGDDDIKSLKSEDETDE
DHVQDHKHGADEEPAADTSKTKAKGSPKQVEGKENSEVDKMDHSSHPMDT
DTEKEEKLESGGSENAGYASQQRQDEDQDTEEQHLDLEEQHLDPEEHHLD
LEEQHLDPEEQHLDLEEHHLELEEQHLDPEEQSLNPAVTEDTQITIESMK
ESDEEFQSAAETEEDDMVGLIMEEEEEEEFVYDKDLASFLDH
BO15457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mip130-PA | 986 | CG3480-PA | 1..986 | 1..986 | 5061 | 100 | Plus |
aly-PB | 568 | CG2075-PB | 66..305 | 213..470 | 240 | 27.7 | Plus |
aly-PA | 568 | CG2075-PA | 66..305 | 213..470 | 240 | 27.7 | Plus |
Sh3beta-PE | 485 | CG8582-PE | 135..350 | 776..984 | 162 | 23.6 | Plus |