Clone BO15457 Report

Search the DGRC for BO15457

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:154
Well:57
Vector:pDNR-Dual
Associated Gene/Transcriptmip130-RA
Protein status:BO15457.pep: validated full length
Sequenced Size:2992

Clone Sequence Records

BO15457.3prime Sequence

735 bp (733 high quality bases) assembled on 2006-05-29

> BO15457.3prime
ATGGTCTAGAAAGCTTGCCAGATCCTTATCGTACACAAACTCCTCTTCCT
CCTCTTCTTCCATGATCAGGCCGACCATGTCGTCCTCCTCGGTCTCGGCG
GCCGATTGAAACTCCTCATCGGATTCCTTCATCGACTCAATGGTGATCTG
CGTGTCCTCGGTCACAGCCGGATTGAGTGACTGCTCCTCCGGGTCCAGGT
GCTGCTCCTCCAGTTCCAGGTGGTGCTCCTCCAGGTCCAGGTGCTGCTCC
TCCGGGTCCAGGTGCTGCTCCTCCAGGTCCAGGTGATGCTCCTCCGGGTC
CAGGTGCTGCTCCTCCAGATCGAGGTGCTGCTCCTCGGTGTCCTGATCCT
CGTCTTGTCGCTGCTGGCTCGCATACCCTGCGTTTTCCGACCCGCCAGAT
TCCAGTTTCTCTTCCTTCTCTGTGTCTGTGTCCATGGGATGGCTACTGTG
GTCCATCTTGTCAACTTCGCTGTTCTCCTTCCCTTCAACCTGCTTTGGAC
TGCCTTTCGCTTTTGTCTTGGAGGTATCTGCGGCGGGCTCCTCATCTGCC
CCATGCTTGTGATCCTGCACATGGTCCTCATCGGTCTCGTCCTCGGATTT
CAGCGATTTAATATCGTCGTCGCCATCCGCCACGCGACTCAAGCTCTTCT
CCTCCAAGCGTCTGCTGATGTCCATGGCTATGTACTCCAGCCGCCCCTGG
ACACTCATCTGGAACACCTCGCGGTTTTCGCTGCA

BO15457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3480-PA 2961 mip130-RA 2242..2958 735..19 3585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
mip130-RA 3459 CG3480-RA 2356..3072 735..19 3585 100 Minus
mip130-RA 3459 CG3480-RA 2790..2909 343..224 450 91.7 Minus
mip130-RA 3459 CG3480-RA 2755..2847 273..181 375 93.5 Minus
mip130-RA 3459 CG3480-RA 2818..2910 336..244 375 93.5 Minus
mip130-RA 3459 CG3480-RA 2832..2910 343..265 260 88.6 Minus
mip130-RA 3459 CG3480-RA 2860..2909 336..287 205 94 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1919215..1919931 735..19 3585 100 Minus
X 23542271 X 1919649..1919768 343..224 450 91.7 Minus
X 23542271 X 1919614..1919706 273..181 375 93.5 Minus
X 23542271 X 1919677..1919769 336..244 375 93.5 Minus
X 23542271 X 1919691..1919769 343..265 260 88.6 Minus
X 23542271 X 1919719..1919768 336..287 205 94 Minus
Blast to na_te.dros performed on 2015-02-10 22:14:35 has no hits.

BO15457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:24 Download gff for BO15457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3480-PA 2243..2961 18..734 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:39 Download gff for BO15457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3480-PA 2243..2961 18..734 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:44:18 Download gff for BO15457.3prime
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 2383..3098 19..734 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:54 Download gff for BO15457.3prime
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 2357..3072 19..734 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:54 Download gff for BO15457.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1919216..1919931 19..734 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:44:18 Download gff for BO15457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1813249..1813964 19..734 100   Minus

BO15457.5prime Sequence

822 bp (805 high quality bases) assembled on 2006-05-29

> BO15457.5prime
GAAGTTATCAGTCGACATGCTTACCGGCCGTCCAGTGAGAATGTCCGTTG
CAGTAAACCAAAAAGGCTGGGGTAAGAAGGCAGGAGCTTCCGTATCCGAC
TCCGCAATTCGTACACAGTCCGCCCTCAGCGAGGGGGGTGGGGCCATTGA
CGTCCGGCCGATGGAGCACGACGAGGAAATCAATCGCGAAGATCTCAACC
TCGACGAGGACGATGAGATGGAGGAGGAGGAGGAGGAGGAGCACGCCGAC
GAAGAGGACGATGACGAGGAGCCGGATAGCAACGAGAACAGCGCACCGGA
GGAGCAAGTAGAGCCGCCGGCCTTCAGCCTAGCGACGCTGGGACTCCAAC
GCGTGGGCAGCGCACCGCCGCCCAAGCCCAAAGTCCAGAAGGCCCCAATC
CCGACCCTAAATGCCCGTGGAATGCCTGCTCGGATACGAAAGAGAAATCG
TCTCTTTTATGACGAGAACATCATCAACGATGACAAGCCGCTGCGCATGA
GCTTGGCACCCAAGAAGACGCCTGGCAGACCACCGCAGTCTGCCGGCGGT
GGCTCTAGCCAGAAGATCCCGCTTACCCCGTCTAAGGTGCTGAAGAAGCG
CAAGGGAGTGGTCTCCCGCTACATGCGTTCCAGTGAGCAGGGAACCAACT
CCGTTTCGGCCAGCAATCAGCCCCAGCTGTTGGGCAAGCACAAGAAGGCG
ACGCCATCGAAGAGCCAGTCGGTGGGCAGCAAGCTGGGCTCCGGTGGACC
GAAAACAGGGCGGGGTGCCCATTTCATTGGAAAGGGTACCGCTGCAGCGG
TGGCTGCAGTAACAGCCGCCGA

BO15457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3480-PA 2961 mip130-RA 1..806 17..822 4005 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
mip130-RA 3459 CG3480-RA 115..920 17..822 4015 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1916976..1917779 19..822 4005 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:30:00 has no hits.

BO15457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:48:25 Download gff for BO15457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3480-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:51:40 Download gff for BO15457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3480-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:01 Download gff for BO15457.5prime
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 141..945 17..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:38 Download gff for BO15457.5prime
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 115..919 17..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:38 Download gff for BO15457.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1916974..1917778 16..821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:01 Download gff for BO15457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1811007..1811811 16..821 99   Plus

BO15457.complete Sequence

2992 bp assembled on 2006-10-11

GenBank Submission: FJ633478

> BO15457.complete
GAAGTTATCAGTCGACATGCTTACCGGCCGTCCAGTGAGAATGTCCGTTG
CAGTAAACCAAAAAGGCTGGGGTAAGAAGGCAGGAGCTTCCGTATCCGAC
TCCGCAATTCGTACACAGTCCGCCCTCAGCGAGGGGGGTGGGGCCATTGA
CGTCCGGCCGATGGAGCACGACGAGGAAATCAATCGCGAAGATCTCAACC
TCGACGAGGACGATGAGATGGAGGAGGAGGAGGAGGAGGAGCACGCCGAC
GAAGAGGACGATGACGAGGAGCCGGATAGCAACGAGAACAGCGCACCGGA
GGAGCAAGTAGAGCCGCCGGCCTTCAGCCTAGCGACGCTGGGACTCCAAC
GCGTGGGCAGCGCACCGCCGCCCAAGCCCAAAGTCCAGAAGGCCCCAATC
CCGACCCTAAATGCCCGTGGAATGCCTGCTCGGATACGAAAGAGAAATCG
TCTCTTTTATGACGAGAACATCATCAACGATGACAAGCCGCTGCGCATGA
GCTTGGCACCCAAGAAGACGCCTGGCAGACCACCGCAGTCTGCCGGCGGT
GGCTCTAGCCAGAAGATCCCGCTTACCCCGTCTAAGGTGCTGAAGAAGCG
CAAGGGAGTGGTCTCCCGCTACATGCGTTCCAGTGAGCAGGGAACCAACT
CCGTTTCGGCCAGCAATCAGCCCCAGCTGTTGGGCAAGCACAAGAAGGCG
ACGCCATCGAAGAGCCAGTCGGTGGGCAGCAAGCTGGGCTCCGGTGGACC
GAAAACAGGGCGGGGTGCCCATTTCATTGGAAAGGGTACCGCTGCAGCGG
TGGCTGCAGTAGCAGCCGCCGAGGAGGAAGCTAACCAGGCTGAGGCTGCA
GCGCTGGCGAACAAGCGGTTGGGCCAGTCCATTGGTCTTCGGCTGCGCAA
TCTGCTCAAGTTGCCCAAAGCGCACAAGTGGGCCATAGCCGAGTGGTTCT
ACTCGTACGTTGACAAGCCGCTATTCGAATGCCGTGATGAGTTTATGAAC
CATGTGAATGAACTGGCACCCAGGCTGGGCACACGGAGCCTCATTCGCCA
CGAGTGGGTGAATATTAGGCGGAGGATGGGCAGGCCGCGGCGATGCTCCG
CCAAATTTTTCAGCGAGGAGCGCAAGGAGTTGGACCGAAAGCGTCAGGTG
ATCCGGACCCTGCAATCGCGGAAGCCAGGCGAGTTCAAGGACTCCGTTTC
CATGCTATCGGACATGCCTGAGAAAATACCGATGACACTGCCGCTGGGCA
CCAAGGTCACTGCCAGATTAAGATCTCCCCAGGACGGGATCTTTGCGGGC
ACTGTGGCCGCCTACGACTCACTAAACGCCATGTACCGAGTGACCTTCGA
ACGAATCGGCTTGGGCACACACGCCATCCCCGACTACGAGATTGTGTCGG
AGAACTTTCACGAGATGCTGCCTCTGCACAGCTTCACGAAGGATTTCCGG
CCGAACTTGATGAGCATCTATCAAACGAATAACCTCGGCTTCACCACCAA
TCTGGGCTTCACGGCAAATCTTACCAACAACTATCTGCAGAAGAAGGAAA
AAATAGACGGCGGTGCAGGAGCGGCAGCTGGAGCGGGATCACTCTACTTC
AAGCCACAGAAGCACCTGGCCACCAATAATGCGGCTGCACGAAATGCGCT
CAGCATGAAGCTGAACAAGAGTGATCCGCTGCTGGGACAGGATTCGGTGG
GCGTGAGTCCCATTCGGCAGCAGTTGACGAGAAATCGCGGCTACTCCACC
TCGCTGTTGGAGCACCTGGTGCGCCTGGAGAAGTACATTGCAGTTAAGGC
GGATCGAATCCAGCGGCTCAACAAGATGAACGGCACCGCCGAGCTGGCCA
TGGGCGATATGATAAGCCATGACGAGAATGGGGATCGCCATCGCCGACAG
ATTGCAGTCAACTTCCAGCGCCAGTATGCCTTCAACATCGTGACCATCGA
GCGCATCAACGCCGAGCTCATGTTCGAGCTCACCAAGGTGCAGGAGCTGT
CCTCCAGCCTGACACGCAATCCCAATGTCCAGGCCATGATTTCGCCGACA
TATTTGCGCGAAGAGTGCCGCGCCAAGGCGTCACAGACGGTCGACGACAT
CAACAAGGGCATGGTGAAGAATACGCGGATGATAAAGCTGCTGAAGGACC
TGACCACGCTGTTGATCGTGACCCAGAATCTCGGCGGCGACTGCGAAGTG
AGCGAGGTTAACGAGGTGCTCGAAGGCTGCCTCGAGGAAGTGCGCAGCAA
TCTAATCTGCAGCGAAAACCGCGAGGTGTTCCAGATGAGTGTCCAGGGGC
GGCTGGAGTACATAGCCATGGACATCAGCAGACGCTTGGAGGAGAAGAGC
TTGAGTCGCGTGGCGGATGGCGACGACGATATTAAATCGCTGAAATCCGA
GGACGAGACCGATGAGGACCATGTGCAGGATCACAAGCATGGGGCAGATG
AGGAGCCCGCCGCAGATACCTCCAAGACAAAAGCGAAAGGCAGTCCAAAG
CAGGTTGAAGGGAAGGAGAACAGCGAAGTTGACAAGATGGACCACAGTAG
CCATCCCATGGACACAGACACAGAGAAGGAAGAGAAACTGGAATCTGGCG
GGTCGGAAAACGCAGGGTATGCGAGCCAGCAGCGACAAGACGAGGATCAG
GACACCGAGGAGCAGCACCTCGATCTGGAGGAGCAGCACCTGGACCCGGA
GGAGCATCACCTGGACCTGGAGGAGCAGCACCTGGACCCGGAGGAGCAGC
ACCTGGACCTGGAGGAGCACCACCTGGAACTGGAGGAGCAGCACCTGGAC
CCGGAGGAGCAGTCACTCAATCCGGCTGTGACCGAGGACACGCAGATCAC
CATTGAGTCGATGAAGGAATCCGATGAGGAGTTTCAATCGGCCGCCGAGA
CCGAGGAGGACGACATGGTCGGCCTGATCATGGAAGAAGAGGAGGAAGAG
GAGTTTGTGTACGATAAGGATCTGGCAAGCTTTCTAGACCAT

BO15457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
mip130-RA 2961 CG3480-PA 1..2958 17..2974 14790 100 Plus
mip130-RA 2961 CG3480-PA 2676..2795 2650..2769 450 91.7 Plus
mip130-RA 2961 CG3480-PA 2641..2733 2720..2812 375 93.5 Plus
mip130-RA 2961 CG3480-PA 2704..2796 2657..2749 375 93.5 Plus
mip130-RA 2961 CG3480-PA 2718..2796 2650..2728 260 88.6 Plus
mip130-RA 2961 CG3480-PA 2746..2795 2657..2706 205 94 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
mip130-RA 3459 CG3480-RA 115..3072 17..2974 14790 100 Plus
mip130-RA 3459 CG3480-RA 2790..2909 2650..2769 450 91.7 Plus
mip130-RA 3459 CG3480-RA 2755..2847 2720..2812 375 93.5 Plus
mip130-RA 3459 CG3480-RA 2818..2910 2657..2749 375 93.5 Plus
mip130-RA 3459 CG3480-RA 2832..2910 2650..2728 260 88.6 Plus
mip130-RA 3459 CG3480-RA 2860..2909 2657..2706 205 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1916976..1919931 19..2974 14780 100 Plus
X 23542271 X 1919649..1919768 2650..2769 450 91.7 Plus
X 23542271 X 1919614..1919706 2720..2812 375 93.5 Plus
X 23542271 X 1919677..1919769 2657..2749 375 93.5 Plus
X 23542271 X 1919691..1919769 2650..2728 260 88.6 Plus
X 23542271 X 1919719..1919768 2657..2706 205 94 Plus
Blast to na_te.dros performed on 2014-11-27 20:26:37 has no hits.

BO15457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:35 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 1..2961 17..2975 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:15 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 111..3071 17..2975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:04 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 141..3098 17..2976 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:36 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 111..3071 17..2975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:32 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
mip130-RA 115..3072 17..2976 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:32 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
X 1916975..1919931 17..2976 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:04 Download gff for BO15457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1811008..1813964 17..2976 99   Plus

BO15457.pep Sequence

Translation from 16 to 2992

> BO15457.pep
MLTGRPVRMSVAVNQKGWGKKAGASVSDSAIRTQSALSEGGGAIDVRPME
HDEEINREDLNLDEDDEMEEEEEEEHADEEDDDEEPDSNENSAPEEQVEP
PAFSLATLGLQRVGSAPPPKPKVQKAPIPTLNARGMPARIRKRNRLFYDE
NIINDDKPLRMSLAPKKTPGRPPQSAGGGSSQKIPLTPSKVLKKRKGVVS
RYMRSSEQGTNSVSASNQPQLLGKHKKATPSKSQSVGSKLGSGGPKTGRG
AHFIGKGTAAAVAAVAAAEEEANQAEAAALANKRLGQSIGLRLRNLLKLP
KAHKWAIAEWFYSYVDKPLFECRDEFMNHVNELAPRLGTRSLIRHEWVNI
RRRMGRPRRCSAKFFSEERKELDRKRQVIRTLQSRKPGEFKDSVSMLSDM
PEKIPMTLPLGTKVTARLRSPQDGIFAGTVAAYDSLNAMYRVTFERIGLG
THAIPDYEIVSENFHEMLPLHSFTKDFRPNLMSIYQTNNLGFTTNLGFTA
NLTNNYLQKKEKIDGGAGAAAGAGSLYFKPQKHLATNNAAARNALSMKLN
KSDPLLGQDSVGVSPIRQQLTRNRGYSTSLLEHLVRLEKYIAVKADRIQR
LNKMNGTAELAMGDMISHDENGDRHRRQIAVNFQRQYAFNIVTIERINAE
LMFELTKVQELSSSLTRNPNVQAMISPTYLREECRAKASQTVDDINKGMV
KNTRMIKLLKDLTTLLIVTQNLGGDCEVSEVNEVLEGCLEEVRSNLICSE
NREVFQMSVQGRLEYIAMDISRRLEEKSLSRVADGDDDIKSLKSEDETDE
DHVQDHKHGADEEPAADTSKTKAKGSPKQVEGKENSEVDKMDHSSHPMDT
DTEKEEKLESGGSENAGYASQQRQDEDQDTEEQHLDLEEQHLDPEEHHLD
LEEQHLDPEEQHLDLEEHHLELEEQHLDPEEQSLNPAVTEDTQITIESMK
ESDEEFQSAAETEEDDMVGLIMEEEEEEEFVYDKDLASFLDH

BO15457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
mip130-PA 986 CG3480-PA 1..986 1..986 5061 100 Plus
aly-PB 568 CG2075-PB 66..305 213..470 240 27.7 Plus
aly-PA 568 CG2075-PA 66..305 213..470 240 27.7 Plus
Sh3beta-PE 485 CG8582-PE 135..350 776..984 162 23.6 Plus